These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1575 fasta sequence [GGCTTCTTCTCGGTTTGTTCGTTCCTTGTGGTCGAGAGTGAGTGAGGTGGAGGAGAGAGAGGAGGAGGAGGAGGAGGGGATTCATTCACGTGGCTTCCGGAGAGAGCAGGAGTCAACGTGCGGCTTGACTCTGGAGATCTCTCTCTGTCGTCTCGCCTCGCCCAAATCAGAAGCGAATGATGGAGGCGTCGAGGTCGTGAGAGGGAGAGGAATCGACGGAGAGAGGGAGGCGGCGGCGGCGGCAGGAAGGTTGGAGAAGGAGAGGCAGTGGAGAAGTCAAGAACAAGAACCCAATCACCGAAACGCCTCATCACTGCAGCAATGCCATCATCAACCATGGCCGTCGACACCACTGCTTCGGAGTACTGGCTCAATTGGAGGTTCATGCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTCCTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGATGGCGGCGAGGACAGTGAGGATGCGCGGCCGCCCCGGGCCGCATCCGGGGTTGTGTACCTTGAAGATTGCTGGAAACCATGCCTTGAGCAGATCCACCCTGGCTGGCTGCTGGCGTTCCGCGTCGTGTCTTTCTTCATTTTAGCCTCCCTGCTTGCGGTTGATGTCGTCGTCGATGGATGGAGTGTCTTCCTATACTACACTCAGTGGACCTTCTTGCTAGTCACCTTATATTTTGGGCTTGGTTCGGTGCTTTCAATTTATGGATGCTATCAGTATTCATACAAGAATGGCGACAATAGATCTGGTGCAGATCATGGCACATATATCATTGCTCCAGCTGGGGAAAGTGTATATGATCAGTCAATAAAAAATCCTTGTTACAGTAAAATGCATGGTGGCAAAGAAATTGCAGGATTTTGGGGTTATCTGTTCCAGATCATGTTTCAGACAAATGCAGGTGCTGTGATGATTACAGATCTGGTGTTTTGGTTTATCCTGTACCCTTTCCTTGCCTACAATCAATATGATATGAATTTTTTGCTGATTGGGACACACTCTATAAATGTTGTGTTCATGATTGGTGATACTGCTATGAATAGCCTGCGTTTCCCGTGGTTTAGAATCGCA-TA-TTTCTTG-CTG-TGGACTGGCGCTTTTGTTAATGTTCAGTGGCTCATCCATGCTAGCATATCGATTTGGTGGCCTTACCCATTTCTGGACTTAGCATTTCCTA-AAGCTCCTGTATGGTATTTGGTGGTAGCAGTGATGCATTTCCCTTGCTATGCT-TTATTCGCCCTGGTTATGAGGCTAAAACAATCTCTGCTGGAAAGATGGTTTCCTCAGAGTTACACCTGCGTGTAGCAAACAAGAACATATATAGTGTTACAATTTCCCTCCTGCTGCATCCTGCAAATGCAAATTATATGGAGCTGCTGCTCACCGTAAATTCCTAGAAACCATATTGTTCAGGGTTAGATGATATTTCGTAAATTTTTTTCAGACAGCAGCTTCTTTGAGTCAGCTGTTGTCTCCTGCTCTTTTCAATGGAGAAAACTGTACAGTCCAATATAATAATATATGGCATTCTCAAAAAAAAAA] [+] EMBL AK067987 [GGCTTCTTCTCGGTTTGTTCGTTCCTTGTGGTCGAGAGTGAGTGAGGTGGAGGAGAGAGAGGAGGAGGAGGAGGAGGGGATTCATTCACGTGGCTTCCGGAGAGAGCAGGAGTCAACGTGCGGCTTGACTCTGGAGATCTCTCTCTGTCGTCTCGCCTCGCCCAAATCAGAAGCGAATGATGGAGGCGTCGAGGTCGTGAGAGGGAGAGGAATCGACGGAGAGAGGGAGGCGGCGGCGGCGGCAGGAAGGTTGGAGAAGGAGAGGCAGTGGAGAAGTCAAGAACAAGAACCCAATCACCGAAACGCCTCATCACTGCAGCAATGCCATCATCAACCATGGCCGTCGACACCACTGCTTCGGAGTACTGGCTCAATTGGAGGTTCATGCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTCCTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGATGGCGGCGAGGACAGTGAGGATGCGCGGCCGCCCCGGGCCGCATCCGGGGTTGTGTACCTTGAAGATTGCTGGAAACCATGCCTTGAGCAGATCCACCCTGGCTGGCTGCTGGCGTTCCGCGTCGTGTCTTTCTTCATTTTAGCCTCCCTGCTTGCGGTTGATGTCGTCGTCGATGGATGGAGTGTCTTCCTATACTACACTCAGTGGACCTTCTTGCTAGTCACCTTATATTTTGGGCTTGGTTCGGTGCTTTCAATTTATGGATGCTATCAGTATTCATACAAGAATGGCGACAATAGATCTGGTGCAGATCATGGCACATATATCATTGCTCCAGCTGGGGAAAGTGTATATGATCAGTCAATAAAAAATCCTTGTTACAGTAAAATGCATGGTGGCAAAGAAATTGCAGGATTTTGGGGTTATCTGTTCCAGATCATGTTTCAGACAAATGCAGGTGCTGTGATGATTACAGATCTGGTGTTTTGGTTTATCCTGTACCCTTTCCTTGCCTACAATCAATATGATATGAATTTTTTGCTGATTGGGACACACTCTATAAATGTTGTGTTCATGATTGGTGATACTGCTATGAATAGCCTGCGTTTCCCGTGGTTTAGAATCGCA TA TTTCTTG CTG TGGACTGGCGCTTTTGTTAATGTTCAGTGGCTCATCCATGCTAGCATATCGATTTGGTGGCCTTACCCATTTCTGGACTTAGCATTTCCTA AAGCTCCTGTATGGTATTTGGTGGTAGCAGTGATGCATTTCCCTTGCTATGCT TTATTCGCCCTGGTTATGAGGCTAAAACAATCTCTGCTGGAAAGATGGTTTCCTCAGAGTTACACCTGCGTGTAGCAAACAAGAACATATATAGTGTTACAATTTCCCTCCTGCTGCATCCTGCAAATGCAAATTATATGGAGCTGCTGCTCACCGTAAATTCCTAGAAACCATATTGTTCAGGGTTAGATGATATTTCGTAAATTTTTTTCAGACAGCAGCTTCTTTGAGTCAGCTGTTGTCTCCTGCTCTTTTCAATGGAGAAAACTGTACAGTCCAATATAATAATATATGGC ] [+] EMBL CA753231 [ CAATTTATGGATGCTATCAGTATTCATACAAGAATGGCGACAATAGATCTGGTGCAGATCATGGCACATATATCATTGCTCCAGCTGGGGAAAGTGTATATGATCAGTCAATAAAAAATCCTTGTTACAGTAAAATGCATGGTGGCAAAGAAATTGCAGGATTTTGGGGTTATCTGTTCCAGATCATGTTTCAGACAAATGCAGGTGCTGTGATGATTACAGATCTGGTGTTTTGGTTTATCCTGTACCCTTTCCTTGCCTACAATCAATATGATATGAATTTTTTGCTGATTGGGACACACTCTATAAATGTTGTGTTCATGATTGGTGATACTGCTATGAATAGCCTGCGTTTCCCGTGGTTTAGAATCGCA TA TTTCTTG CTG TGGACTGGCGCTTTTGTTAATGTTCAGTGGCTCATCCATGCTAGCATATCGATNTGGTGGCCTTACCCATTTCTGGACTTAGCATTTCCTA AAGCTCCTGTATGGTATTTGGTGGTAGCAGTGATGCATTTCCCTTGCTATGCT TTATTCGCCCTGGTTATGAGGC ] [+] EMBL BI805987 [ ttgTAGAATCGCACTAGTTTCNTGTCGGTTGGACTGGCGCTTTTGTTAATGTGCAGTGGCTCATCCATGCTAGCATATCGATTT GTGGCCTTACCCCTTTCTGGACGTAGCCTTTCCTATAAGCTCCTGTATGGTATTTGGTGGTAGCCGTGATGCATTTCCCTTGCTATGCTGTTATTCGCCCTGGTTATGAGGCT AAACCATCTCTGCTGGAAAGATGGTTTCCTCACAGTTACACCTGCGTGTAGCNAAC AGAACATATATAGTGTTACNATTTCCCTCCTGCTGCATCCTGCAAATGCNAATTATATGGAGCTGCTGCTCACCGTAAATTCCTAGAAACCATATTGTTCAGGGTTAGATGATATTTCGTAAATTTTTTTCAGACAGCAGCTTCTTTGAGTCAGCTGTTGTCTCCTGCTCTTTTCAATGGAGAAAACTGTACAGTCCAGTATAATAATATATGGCATTCTCAAAAAAAAAA] consensusID : consensus_7045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [TTTTTTTTTTTTTTGAGTAGTAATATCCTGTATTATGAATCTGGCTGCAAACGCCTTATCTCTGCAGCAATGCCATCATCAGCCATGGCCGTCGACACCACTGTTCCTGAGTATTGGCTCAACTGAAAGTTCATTCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTCCTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGATGGCGGCGGAAACAGTGAGGATGCGCGGCTGCCCCGGGCCGCATTCGGGGTCGTGTACCTTGAAAATTGCTGGAAGCCATGCCTTGAGCAGATCCACCCCTTGTCTCGTCCTCT] [+] EMBL CA760291 [TTTTTTTTTTTTTTGAGTAGTAATATCCTGTATTATGAATCTGGCTGCAAACGCCTTATCTCTGCAGCAATGCCATCATCAGCCATGGCCGTCGACACCACTGTTCCTGAGTATTGGCTCAACTGAAAGTTCATTCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTCCTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGATGGCGGCGGAAACAGTGAGGATGCGCGGCTGCCCCGGGCCGCATTCGGGGTCGTGTACCTTGAAAATTGCTGGAAGCCATGCCTTGAGCAGATCCACCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7045#0 GGCTTCTTCTCGGTTTGTTCGTTCCTTGTGGTCGAGAGTGAGTGAGGTGGAGGAGAGAGA 60 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 GGAGGAGGAGGAGGAGGGGATTCATTCACGTGGCTTCCGGAGAGAGCAGGAGTCAACGTG 120 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 CGGCTTGACTCTGGAGATCTCTCTCTGTCGTCTCGCCTCGCCCAAATCAGAAGCGAATGA 180 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 TGGAGGCGTCGAGGTCGTGAGAGGGAGAGGAATCGACGGAGAGAGGGAGGCGGCGGCGGC 240 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 GGCAGGAAGGTTGGAGAAGGAGAGGCAGTGGAGAAGTCAAGAACAAGAACCCAATCACCG 300 consensus_7045#1 --------TTTTTTTTTTTTTTGAGTAGT--AATATCCTGTATTATGAATCTGGCTGC-- 48 ** * *** * * * * * *** * * consensus_7045#0 AAACGCCTCATCACTGCAGCAATGCCATCATCAACCATGGCCGTCGACACCACTGCTTCG 360 consensus_7045#1 AAACGCCTTATCTCTGCAGCAATGCCATCATCAGCCATGGCCGTCGACACCACTGTTCCT 108 ******** *** ******************** ********************* * * consensus_7045#0 GAGTACTGGCTCAATTGGAGGTTCATGCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTC 420 consensus_7045#1 GAGTATTGGCTCAACTGAAAGTTCATTCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTC 168 ***** ******** ** * ****** ********************************* consensus_7045#0 CTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGAT 480 consensus_7045#1 CTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGAT 228 ************************************************************ consensus_7045#0 GGCGGCGAGGACAGTGAGGATGCGCGGCCGCCCCGGGCCGCATCCGGGGTTGTGTACCTT 540 consensus_7045#1 GGCGGCGGAAACAGTGAGGATGCGCGGCTGCCCCGGGCCGCATTCGGGGTCGTGTACCTT 288 ******* ****************** ************** ****** ********* consensus_7045#0 GAAGATTGCTGGAAACCATGCCTTGAGCAGATCCACCCTGGCTGGCTGCTGGCGTTCCGC 600 consensus_7045#1 GAAAATTGCTGGAAGCCATGCCTTGAGCAGATCCACCCC--TTGTCTCGTCCTCT----- 341 *** ********** *********************** ** ** * * consensus_7045#0 GTCGTGTCTTTCTTCATTTTAGCCTCCCTGCTTGCGGTTGATGTCGTCGTCGATGGATGG 660 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 AGTGTCTTCCTATACTACACTCAGTGGACCTTCTTGCTAGTCACCTTATATTTTGGGCTT 720 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 GGTTCGGTGCTTTCAATTTATGGATGCTATCAGTATTCATACAAGAATGGCGACAATAGA 780 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 TCTGGTGCAGATCATGGCACATATATCATTGCTCCAGCTGGGGAAAGTGTATATGATCAG 840 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 TCAATAAAAAATCCTTGTTACAGTAAAATGCATGGTGGCAAAGAAATTGCAGGATTTTGG 900 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 GGTTATCTGTTCCAGATCATGTTTCAGACAAATGCAGGTGCTGTGATGATTACAGATCTG 960 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 GTGTTTTGGTTTATCCTGTACCCTTTCCTTGCCTACAATCAATATGATATGAATTTTTTG 1020 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 CTGATTGGGACACACTCTATAAATGTTGTGTTCATGATTGGTGATACTGCTATGAATAGC 1080 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 CTGCGTTTCCCGTGGTTTAGAATCGCATATTTCTTGCTGTGGACTGGCGCTTTTGTTAAT 1140 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 GTTCAGTGGCTCATCCATGCTAGCATATCGATTTGGTGGCCTTACCCATTTCTGGACTTA 1200 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 GCATTTCCTAAAGCTCCTGTATGGTATTTGGTGGTAGCAGTGATGCATTTCCCTTGCTAT 1260 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 GCTTTATTCGCCCTGGTTATGAGGCTAAAACAATCTCTGCTGGAAAGATGGTTTCCTCAG 1320 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 AGTTACACCTGCGTGTAGCAAACAAGAACATATATAGTGTTACAATTTCCCTCCTGCTGC 1380 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 ATCCTGCAAATGCAAATTATATGGAGCTGCTGCTCACCGTAAATTCCTAGAAACCATATT 1440 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 GTTCAGGGTTAGATGATATTTCGTAAATTTTTTTCAGACAGCAGCTTCTTTGAGTCAGCT 1500 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 GTTGTCTCCTGCTCTTTTCAATGGAGAAAACTGTACAGTCCAATATAATAATATATGGCA 1560 consensus_7045#1 ------------------------------------------------------------ consensus_7045#0 TTCTCAAAAAAAAAA 1575 consensus_7045#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||