cluster # 7047

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Oryza sativa
cluster # 7047 cluster # 7047 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7047#0 length = 1246 sequences # 3

consensus_7047#1 length = 360 sequences # 1

consensusID : consensus_7047#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1246
fasta sequence

                              [TGCACTTACAGCTGCAGCTAGCTTTGCCCAGTTTTGCTTAGCTTTTCTCTGCTTCCTTCGATCCCATCCATGTCCAGGTTGATGGCCGCCATGCTGCTCGGTGGCGCCCGCGTCGCCGGTAACACCACCACCGCCGTGATGGAGCTTCATCATCCGAGGCCGTCGTACTTCCTCCCTCCCCGGCCGCGGCTGGCGGCGGCGAGCTGGAGCCGCCTCCGCCTGCAGACCGCGCCGAGATCATCCCAGGCGTACGACAACTCGCCGGCGGACGACCGAAGGGACGTCGGGGACAGGTACAGGGACGCCGCGGAGGAGGCGAAGGAGGCCACCGGCGACGCCAAGGAGCGGGTGAAAGGGATGGCCGGGGAGGCCAAGGGCAGGGCGGCGGACATTGCCGGCAGGGCCAAGGACGAGACCAAGGACACGGCGTCGCGCGCGGCCGACGCGGCGTCGCGGGCGACGGACCGGGCGAAGCACGAGGCCGCCGACAAGGCGGCGGACGTGAAGGACCGCGCCAAGGACGCGGCGGACATGGCGCAGGGCACGGCGAGGGCGGTGAGGGACAAGACGGCGGAGACGGCGGAGGGCGCCATGGACAGGGCCGGCGAGGCCAAGGACAGGACAGTGGAAGGGACGAAGCACGCCGGCGAGAAGGTGGCGGAGATGACCAAGGAAGGGGCGAGCAAGGTGGTGGAGACGGCGCAGGCCATCGGCGAGAAGGCGAAGCAGGCGGCGCAGGGCGCGTGGGGCGCCACCAAGGAGGCGGCGCAGGGCGTCAAGGACACGGTCGCCGGCGGCGACGTCGACGCCGACGCCGCGATGAAGGAGCAGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCAGGCCAGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAAACTGCATACTTGTTGCATGCTTATTTGTACTAAAAGCTTTTTTTTTTAGCTGAATTTTAGTC-GGTTCAGTTCTT-TTGGTTGAATAATGTTGGCAAACTTGAGCCTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAAGGAACTTATTGAAGTTATTAGCCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGCCCCTTCCTGGGGGGGGGGGAGTTTTTTTAACCCCCGGGGGCTACCCCCT]

[+] EMBL AK073109             [TGCACTTACAGCTGCAGCTAGCTTTGCCCAGTTTTGCTTAGCTTTTCTCTGCTTCCTTCGATCCCATCCATGTCCAGGTTGATGGCCGCCATGCTGCTCGGTGGCGCCCGCGTCGCCGGTAACACCACCACCGCCGTGATGGAGCTTCATCATCCGAGGCCGTCGTACTTCCTCCCTCCCCGGCCGCGGCTGGCGGCGGCGAGCTGGAGCCGCCTCCGCCTGCAGACCGCGCCGAGATCATCCCAGGCGTACGACAACTCGCCGGCGGACGACCGAAGGGACGTCGGGGACAGGTACAGGGACGCCGCGGAGGAGGCGAAGGAGGCCACCGGCGACGCCAAGGAGCGGGTGAAAGGGATGGCCGGGGAGGCCAAGGGCAGGGCGGCGGACATTGCCGGCAGGGCCAAGGACGAGACCAAGGACACGGCGTCGCGCGCGGCCGACGCGGCGTCGCGGGCGACGGACCGGGCGAAGCACGAGGCCGCCGACAAGGCGGCGGACGTGAAGGACCGCGCCAAGGACGCGGCGGACATGGCGCAGGGCACGGCGAGGGCGGTGAGGGACAAGACGGCGGAGACGGCGGAGGGCGCCATGGACAGGGCCGGCGAGGCCAAGGACAGGACAGTGGAAGGGACGAAGCACGCCGGCGAGAAGGTGGCGGAGATGACCAAGGAAGGGGCGAGCAAGGTGGTGGAGACGGCGCAGGCCATCGGCGAGAAGGCGAAGCAGGCGGCGCAGGGCGCGTGGGGCGCCACCAAGGAGGCGGCGCAGGGCGTCAAGGACACGGTCGCCGGCGGCGACGTCGACGCCGACGCCGCGATGAAGGAGCAGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCAGGCCAGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAAACTGCATACTTGTTGCATGCTTATTTGTACTAAAAGCTTTTTTTTTTAGCTGAATTTTAGTC GGTTCAGTTCTT TTGGTTGAATAATGTTGGCAAACTTGAGCCTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAAGGAACTTATTGAAGTTA                                                                                                                                                                                              ]
[+] EMBL CF314457             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCGCAGGAGGAGAAGAAGAGGCAGGCCAGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAAACTGCATACTTGTTGCATGCTTATTTGTACTAAAAGCTTTTTTTTTTAGCTGAATTTTAGTCGGGTTCAGTTCTTNTTGGTTGAATAATGTTGGCAAACTTGAGCCTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAAGGAACTTATT                                                                                                                                                                                                     ]
[+] EMBL CF309145             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTCTGTAAGACTGTAACTGTAATGGAAAGGAACTTATTGAAGTTATTAGCCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGCCCCTTCCTGGGGGGGGGGGAGTTTTTTTAACCCCCGGGGGCTACCCCCT]




>consensus_7047#0
TGCACTTACAGCTGCAGCTAGCTTTGCCCAGTTTTGCTTAGCTTTTCTCTGCTTCCTTCG
ATCCCATCCATGTCCAGGTTGATGGCCGCCATGCTGCTCGGTGGCGCCCGCGTCGCCGGT
AACACCACCACCGCCGTGATGGAGCTTCATCATCCGAGGCCGTCGTACTTCCTCCCTCCC
CGGCCGCGGCTGGCGGCGGCGAGCTGGAGCCGCCTCCGCCTGCAGACCGCGCCGAGATCA
TCCCAGGCGTACGACAACTCGCCGGCGGACGACCGAAGGGACGTCGGGGACAGGTACAGG
GACGCCGCGGAGGAGGCGAAGGAGGCCACCGGCGACGCCAAGGAGCGGGTGAAAGGGATG
GCCGGGGAGGCCAAGGGCAGGGCGGCGGACATTGCCGGCAGGGCCAAGGACGAGACCAAG
GACACGGCGTCGCGCGCGGCCGACGCGGCGTCGCGGGCGACGGACCGGGCGAAGCACGAG
GCCGCCGACAAGGCGGCGGACGTGAAGGACCGCGCCAAGGACGCGGCGGACATGGCGCAG
GGCACGGCGAGGGCGGTGAGGGACAAGACGGCGGAGACGGCGGAGGGCGCCATGGACAGG
GCCGGCGAGGCCAAGGACAGGACAGTGGAAGGGACGAAGCACGCCGGCGAGAAGGTGGCG
GAGATGACCAAGGAAGGGGCGAGCAAGGTGGTGGAGACGGCGCAGGCCATCGGCGAGAAG
GCGAAGCAGGCGGCGCAGGGCGCGTGGGGCGCCACCAAGGAGGCGGCGCAGGGCGTCAAG
GACACGGTCGCCGGCGGCGACGTCGACGCCGACGCCGCGATGAAGGAGCAGGACAGGATC
GCGCAGGAGGAGAAGAAGAGGCAGGCCAGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAA
ACTGCATACTTGTTGCATGCTTATTTGTACTAAAAGCTTTTTTTTTTAGCTGAATTTTAG
TCGGTTCAGTTCTTTTGGTTGAATAATGTTGGCAAACTTGAGCCTCCTAATGTCTGTAAG
ACTGTAACTGTAATGGAAAGGAACTTATTGAAGTTATTAGCCCTGCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGCCCC
TTCCTGGGGGGGGGGGAGTTTTTTTAACCCCCGGGGGCTACCCCCT

consensusID : consensus_7047#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [CACGGCGGCGCCACGGGCGCGTGGGGCCGCCACCCAAGGAGCGCGGCGCCACGGGCGTCCAAGGACACCGGTCGCCGGCCGGCGACCGTCGACGCCGACGCCCGCGATGAAGGACGCAGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCCAGCGCCCAGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAAACCTGCATACCTTGTTGCCATGCTTATTTGTACTAAAAGCTTTTTTTTAGCTGAATTTTAGTCGGTTCAGTTCTTTTGGTTGAATAATGTTGCAACTTGAGCCTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAGACTTATTGAAGTTATTAGCACAAAGCCTTAG]

[+] EMBL BI799534             [CACGGCGGCGCCACGGGCGCGTGGGGCCGCCACCCAAGGAGCGCGGCGCCACGGGCGTCCAAGGACACCGGTCGCCGGCCGGCGACCGTCGACGCCGACGCCCGCGATGAAGGACGCAGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCCAGCGCCCAGGGAGAAGGGCGCTGGCTTGCCTTAGGCTAAAACCTGCATACCTTGTTGCCATGCTTATTTGTACTAAAAGCTTTTTTTTAGCTGAATTTTAGTCGGTTCAGTTCTTTTGGTTGAATAATGTTGCAACTTGAGCCTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAGACTTATTGAAGTTATTAGCACAAAGCCTTAG]




>consensus_7047#1
CACGGCGGCGCCACGGGCGCGTGGGGCCGCCACCCAAGGAGCGCGGCGCCACGGGCGTCC
AAGGACACCGGTCGCCGGCCGGCGACCGTCGACGCCGACGCCCGCGATGAAGGACGCAGG
ACAGGATCGCGCAGGAGGAGAAGAAGAGGCCAGCGCCCAGGGAGAAGGGCGCTGGCTTGC
CTTAGGCTAAAACCTGCATACCTTGTTGCCATGCTTATTTGTACTAAAAGCTTTTTTTTA
GCTGAATTTTAGTCGGTTCAGTTCTTTTGGTTGAATAATGTTGCAACTTGAGCCTCCTAA
TGTCTGTAAGACTGTAACTGTAATGGAAGACTTATTGAAGTTATTAGCACAAAGCCTTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7047#0      TGCACTTACAGCTGCAGCTAGCTTTGCCCAGTTTTGCTTAGCTTTTCTCTGCTTCCTTCG 60
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      ATCCCATCCATGTCCAGGTTGATGGCCGCCATGCTGCTCGGTGGCGCCCGCGTCGCCGGT 120
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      AACACCACCACCGCCGTGATGGAGCTTCATCATCCGAGGCCGTCGTACTTCCTCCCTCCC 180
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      CGGCCGCGGCTGGCGGCGGCGAGCTGGAGCCGCCTCCGCCTGCAGACCGCGCCGAGATCA 240
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      TCCCAGGCGTACGACAACTCGCCGGCGGACGACCGAAGGGACGTCGGGGACAGGTACAGG 300
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      GACGCCGCGGAGGAGGCGAAGGAGGCCACCGGCGACGCCAAGGAGCGGGTGAAAGGGATG 360
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      GCCGGGGAGGCCAAGGGCAGGGCGGCGGACATTGCCGGCAGGGCCAAGGACGAGACCAAG 420
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      GACACGGCGTCGCGCGCGGCCGACGCGGCGTCGCGGGCGACGGACCGGGCGAAGCACGAG 480
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      GCCGCCGACAAGGCGGCGGACGTGAAGGACCGCGCCAAGGACGCGGCGGACATGGCGCAG 540
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      GGCACGGCGAGGGCGGTGAGGGACAAGACGGCGGAGACGGCGGAGGGCGCCATGGACAGG 600
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      GCCGGCGAGGCCAAGGACAGGACAGTGGAAGGGACGAAGCACGCCGGCGAGAAGGTGGCG 660
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      GAGATGACCAAGGAAGGGGCGAGCAAGGTGGTGGAGACGGCGCAGGCCATCGGCGAGAAG 720
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      GCGAAGCAGGCGGCGCAGGGCGCGTGGGGC-GCCACC-AAGGAG-GCGGCGCA--GGGCG 775
consensus_7047#1      -CACGGC-GGCGCCAC-GGGCGCGTGGGGCCGCCACCCAAGGAGCGCGGCGCCACGGGCG 57
                       *   ** **** * * ************* ****** ****** *******   *****

consensus_7047#0      TC-AAGGACAC-GGTCGCCGGC-GGCGAC-GTCGACGCCGACGCC-GCGATGAAGGA-GC 829
consensus_7047#1      TCCAAGGACACCGGTCGCCGGCCGGCGACCGTCGACGCCGACGCCCGCGATGAAGGACGC 117
                      ** ******** ********** ****** *************** *********** **

consensus_7047#0      AGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCAGGC---CAGGGAGAAGGGCGCTGGCT 886
consensus_7047#1      AGGACAGGATCGCGCAGGAGGAGAAGAAGAGGCCAGCGCCCAGGGAGAAGGGCGCTGGCT 177
                      *********************************  **   ********************

consensus_7047#0      TGCCTTAGGCTAAAAC-TGCATAC-TTGTTGC-ATGCTTATTTGTACTAAAAGCTTTTTT 943
consensus_7047#1      TGCCTTAGGCTAAAACCTGCATACCTTGTTGCCATGCTTATTTGTACTAAAAGCTTTTTT 237
                      **************** ******* ******* ***************************

consensus_7047#0      TTTTAGCTGAATTTTAGTCGGTTCAGTTCTTTTGGTTGAATAATGTTGGCAAACTTGAGC 1003
consensus_7047#1      TT--AGCTGAATTTTAGTCGGTTCAGTTCTTTTGGTTGAATAATGTTGC--AACTTGAGC 293
                      **  ********************************************   *********

consensus_7047#0      CTCCTAATGTCTGTAAGACTGTAACTGTAATGGAAAGGAACTTATTGAAGTTATTAGCCC 1063
consensus_7047#1      CTCCTAATGTCTGTAAGACTGTAACTGTAATGGAA---GACTTATTGAAGTTATTAGC-- 348
                      ***********************************    *******************  

consensus_7047#0      TGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1123
consensus_7047#1      -ACAAAGCCTTAG----------------------------------------------- 360
                        ****     *                                                

consensus_7047#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1183
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      AACCCCGGGGGGGCCCCTTCCTGGGGGGGGGGGAGTTTTTTTAACCCCCGGGGGCTACCC 1243
consensus_7047#1      ------------------------------------------------------------
                                                                                  

consensus_7047#0      CCT 1246
consensus_7047#1      ---