cluster # 7048

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Oryza sativa
cluster # 7048 cluster # 7048 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7048#0 length = 1309 sequences # 3

consensus_7048#1 length = 294 sequences # 1

consensusID : consensus_7048#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1309
fasta sequence

                              [GAAGGCTGCTCCGAAGGCGGGCGCCACCGCCGA-CCCGGTGGTGCTGAGGATGGAGTTGCATTGCGCCGGCTGCGCGCAGAAGGTCAAGAAGTCCATCAAGCACTTGGCCGGGGTGGAGTCGGTGGCGGCGGACGTGGCGACGAACACGGTCGTCGTGGCGGGGACGGCCGAAGCGGCCGCGCTCAAGGCGAGGATCGAGGCGAAGACCAAGAAGCCCGTCGAGGTTGTCTCCGCCGGCGGCGGTGGCGCCGCCGCCAAGAAACCCGCCGCCGAGCCCAAGGCCGTCAAGGACGATGGCGGCGAGAAGAAGGACGCCTAGGCGAAAGAGGAGAAGGGGAAGAAGCAACCGCCAGAGGAGAAGAAACCCAAAGAGGAAACGGTGCTGCTCAGGATTCGCCTCCACTGCGATGGCTGCGCCGACCGCATCAGGCGACGCATCTACAAGATCAAAGGGGTGAAGGAAGTGGTAATGGACGGCAATGCCAAGGATGAGGTGAAGGTGTCGGGCACAATGGACGTGCCGGCCATGCTGACCTATCTCACCGAGAAGCTCAACCGCGCCGTGGAGGCCGTGGCGCCCGGCAGCAAGAAAGACGAGAAGAAGAAGGACAAGGGCGGTGACGCCGACGGCGGCGAGAAGAAGAAAGACGCCGCCGGCGGCGACAAGAAGGACAAAGGCAAGAGCATCGAGGTCGCCGGCCCGTCCACCGCCGCCGCCGCGGCGTCCATGGCGCCGGCGCCGGCCGAGGCGAGCACGTACCACGTCTCGCCGTACGGCCACGGCTACTTCGCGTACCCGCAGCAGCAGGGACCTCCCCCCAGCTACTACCAGTACTACGGCGGCGGCAATGGCGACGGCGTGGGCTACGCCAACCCCAATGCCGGCGGCGCCGGCGGCTACTACCACCCCCACCCCAACGACGTCCCTACCTACCAGCCGCCGCCGTCGTACCCGCCGTACCCCTACCAGCTCGACATGTCGCCGGCGCCGCAGCTGTTCAGCGACGAGAACCCCAACGCCTGCTCGGTGATGTGATCGCCATGCCTCCGGCGACAGAGCTCAGAGGCCAATCTGACGACATGTACATACCGAGGACTTTAGACTTAGAAGATCAGAGGCATCCACCAAACGTGTTGTTATGCTTTCGATCAATTTTTGTCCAAACTTACCCCTTCTGTTGTAGCGTCATTTTTTTTAGATCAATTCTTGACTGGTTAAGCGAAATTTGATTTTAACTAGAGTATTAGCGGATGAAATGGACTGATGGAGTGATGATCTTTTGGTCGCAAAATGCGTGCCTAGTCAGAG]

[+] EMBL AK102357             [GAAGGCTGCTCCGAAGGCGGGCGCCACCGCCGA CCCGGTGGTGCTGAGGATGGAGTTGCATTGCGCCGGCTGCGCGCAGAAGGTCAAGAAGTCCATCAAGCACTTGGCCGGGGTGGAGTCGGTGGCGGCGGACGTGGCGACGAACACGGTCGTCGTGGCGGGGACGGCCGAAGCGGCCGCGCTCAAGGCGAGGATCGAGGCGAAGACCAAGAAGCCCGTCGAGGTTGTCTCCGCCGGCGGCGGTGGCGCCGCCGCCAAGAAACCCGCCGCCGAGCCCAAGGCCGTCAAGGACGATGGCGGCGAGAAGAAGGACGCCTAGGCGAAAGAGGAGAAGGGGAAGAAGCAACCGCCAGAGGAGAAGAAACCCAAAGAGGAAACGGTGCTGCTCAGGATTCGCCTCCACTGCGATGGCTGCGCCGACCGCATCAGGCGACGCATCTACAAGATCAAAGGGGTGAAGGAAGTGGTAATGGACGGCAATGCCAAGGATGAGGTGAAGGTGTCGGGCACAATGGACGTGCCGGCCATGCTGACCTATCTCACCGAGAAGCTCAACCGCGCCGTGGAGGCCGTGGCGCCCGGCAGCAAGAAAGACGAGAAGAAGAAGGACAAGGGCGGTGACGCCGACGGCGGCGAGAAGAAGAAAGACGCCGCCGGCGGCGACAAGAAGGACAAAGGCAAGAGCATCGAGGTCGCCGGCCCGTCCACCGCCGCCGCCGCGGCGTCCATGGCGCCGGCGCCGGCCGAGGCGAGCACGTACCACGTCTCGCCGTACGGCCACGGCTACTTCGCGTACCCGCAGCAGCAGGGACCTCCCCCCAGCTACTACCAGTACTACGGCGGCGGCAATGGCGACGGCGTGGGCTACGCCAACCCCAATGCCGGCGGCGCCGGCGGCTACTACCACCCCCACCCCAACGACGTCCCTACCTACCAGCCGCCGCCGTCGTACCCGCCGTACCCCTACCAGCTCGACATGTCGCCGGCGCCGCAGCTGTTCAGCGACGAGAACCCCAACGCCTGCTCGGTGATGTGATCGCCATGCCTCCGGCGACAGAGCTCAGAGGCCAATCTGACGACATGTACATACCGAGGACTTTAGACTTAGAAGATCAGAGGCATCCACCAAACGTGTTGTTATGCTTTCGATCAATTTTTGTCCAAACTTACCCCTTCTGTTGTAGCGTCATTTTTTTTAGATCAATTCTTGACTGGTTAAGCGAAATTTGATTTTAACTAGAGTATTAGCGGATGAAATGGACTGATGGAGTGATGATCTTTTGGTCGCAAAATGCGTGCCTAGTCAGAG]
[+] EMBL AU066197             [GAAGGCTGCTCCGAA GCGGGCGCCACCG CGATCCCGGTGGTGCTGAGGATGGAGTTGCATTGCGCCGGCTGCGCGCAGAAGGTCAAGAAGTCCATCAAGCACTTGGCCGGGGTGGAGTCGGTGGCGGCGGACGTGGCGACGAACACGGTCGTCGTGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU176402             [                                                                                                                                                                                                                CAAGAAGCCCGTCGAGGTTGTCTCCGCCGGCGGCGGTGGCGCCGCCGCCAAGAAACCCGCCGCCGAGCCCAAGGCCGTCAAGGACGATGGCGGCGAGAAGAAGGACGCCCAGGCGAAAGAGGAGAAGGGGAAGAAGCAACCGCCAGAGGAGAAGAAACCCAAAGAGGAAACGGTGCTGCTCAGGATTCGCCTCCACTGCGATGGCTGCGCCGACCGCATCAGGCGACGCATCTACAAGATCAAAGGGGTGAAGGAAGTGGTAATGGACGGCAATGCCAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_7048#0
GAAGGCTGCTCCGAAGGCGGGCGCCACCGCCGACCCGGTGGTGCTGAGGATGGAGTTGCA
TTGCGCCGGCTGCGCGCAGAAGGTCAAGAAGTCCATCAAGCACTTGGCCGGGGTGGAGTC
GGTGGCGGCGGACGTGGCGACGAACACGGTCGTCGTGGCGGGGACGGCCGAAGCGGCCGC
GCTCAAGGCGAGGATCGAGGCGAAGACCAAGAAGCCCGTCGAGGTTGTCTCCGCCGGCGG
CGGTGGCGCCGCCGCCAAGAAACCCGCCGCCGAGCCCAAGGCCGTCAAGGACGATGGCGG
CGAGAAGAAGGACGCCTAGGCGAAAGAGGAGAAGGGGAAGAAGCAACCGCCAGAGGAGAA
GAAACCCAAAGAGGAAACGGTGCTGCTCAGGATTCGCCTCCACTGCGATGGCTGCGCCGA
CCGCATCAGGCGACGCATCTACAAGATCAAAGGGGTGAAGGAAGTGGTAATGGACGGCAA
TGCCAAGGATGAGGTGAAGGTGTCGGGCACAATGGACGTGCCGGCCATGCTGACCTATCT
CACCGAGAAGCTCAACCGCGCCGTGGAGGCCGTGGCGCCCGGCAGCAAGAAAGACGAGAA
GAAGAAGGACAAGGGCGGTGACGCCGACGGCGGCGAGAAGAAGAAAGACGCCGCCGGCGG
CGACAAGAAGGACAAAGGCAAGAGCATCGAGGTCGCCGGCCCGTCCACCGCCGCCGCCGC
GGCGTCCATGGCGCCGGCGCCGGCCGAGGCGAGCACGTACCACGTCTCGCCGTACGGCCA
CGGCTACTTCGCGTACCCGCAGCAGCAGGGACCTCCCCCCAGCTACTACCAGTACTACGG
CGGCGGCAATGGCGACGGCGTGGGCTACGCCAACCCCAATGCCGGCGGCGCCGGCGGCTA
CTACCACCCCCACCCCAACGACGTCCCTACCTACCAGCCGCCGCCGTCGTACCCGCCGTA
CCCCTACCAGCTCGACATGTCGCCGGCGCCGCAGCTGTTCAGCGACGAGAACCCCAACGC
CTGCTCGGTGATGTGATCGCCATGCCTCCGGCGACAGAGCTCAGAGGCCAATCTGACGAC
ATGTACATACCGAGGACTTTAGACTTAGAAGATCAGAGGCATCCACCAAACGTGTTGTTA
TGCTTTCGATCAATTTTTGTCCAAACTTACCCCTTCTGTTGTAGCGTCATTTTTTTTAGA
TCAATTCTTGACTGGTTAAGCGAAATTTGATTTTAACTAGAGTATTAGCGGATGAAATGG
ACTGATGGAGTGATGATCTTTTGGTCGCAAAATGCGTGCCTAGTCAGAG

consensusID : consensus_7048#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [GAAGGCTGCTCCGAAGCGGGCGCCACCGCCGACCCGGTGGTGCTGAGGATGGAGTTGCATTGCGCCGGCTGCGCGCAGAAGGTCAAGAAGTCCATCAAGCACTTGGCCGGTACGCATCTCGGTCTCGATTATTCGCCGCTGCCGCCTCTCGTTTCTTTCTCTTTTTTCTTTTTGAGCCTTTTTTGGGGGGTTCGATTTGGTGTCTGGGTGTCTGAATTTTTGGGTTGTCTCTGGGATCGCAGGGGTGGAGTCGGTGGCGGCGGACGTGGCGACGAACACGGTCGTCGTGGCGGG]

[+] EMBL AU070673             [GAAGGCTGCTCCGAAGCGGGCGCCACCGCCGACCCGGTGGTGCTGAGGATGGAGTTGCATTGCGCCGGCTGCGCGCAGAAGGTCAAGAAGTCCATCAAGCACTTGGCCGGTACGCATCTCGGTCTCGATTATTCGCCGCTGCCGCCTCTCGTTTCTTTCTCTTTTTTCTTTTTGAGCCTTTTTTGGGGGGTTCGATTTGGTGTCTGGGTGTCTGAATTTTTGGGTTGTCTCTGGGATCGCAGGGGTGGAGTCGGTGGCGGCGGACGTGGCGACGAACACGGTCGTCGTGGCGGG]




>consensus_7048#1
GAAGGCTGCTCCGAAGCGGGCGCCACCGCCGACCCGGTGGTGCTGAGGATGGAGTTGCAT
TGCGCCGGCTGCGCGCAGAAGGTCAAGAAGTCCATCAAGCACTTGGCCGGTACGCATCTC
GGTCTCGATTATTCGCCGCTGCCGCCTCTCGTTTCTTTCTCTTTTTTCTTTTTGAGCCTT
TTTTGGGGGGTTCGATTTGGTGTCTGGGTGTCTGAATTTTTGGGTTGTCTCTGGGATCGC
AGGGGTGGAGTCGGTGGCGGCGGACGTGGCGACGAACACGGTCGTCGTGGCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7048#0      GAAGGCTGCTCCGAAGGCGGGCGCCACCGCCGACCCGGTGGTGCTGAGGATGGAGTTGCA 60
consensus_7048#1      GAAGGCTGCTCCGAAG-CGGGCGCCACCGCCGACCCGGTGGTGCTGAGGATGGAGTTGCA 59
                      **************** *******************************************

consensus_7048#0      TTGCGCCGGCTGCGCGCAGAAGGTCAAGAAGTCCATCAAGCACTTGGCCGGGGTGGAG-T 119
consensus_7048#1      TTGCGCCGGCTGCGCGCAGAAGGTCAAGAAGTCCATCAAGCACTTGGCCGGTACGCATCT 119
                      ***************************************************   * *  *

consensus_7048#0      CGGTGGCGGCGGACGTGGCGACGAACACGGTCGTCGTGGCGGGGACGGCCGAAGCGGCCG 179
consensus_7048#1      CGGTCTCGATT-ATTCGCCGCTGCCGCCTCTCGTTTCTTTCTCTTTTTTCTTTTTGA--G 176
                      ****  **    *   * **  *    *  ****               *     *   *

consensus_7048#0      CGCTCAAGGCGAGGATCGAGGCGAAGACCAAGAAGCCCG---TCGAGGTTGTCTCCGCCG 236
consensus_7048#1      CCTTTTTTGGGGGGTTCGATTTGGTGTCTGGGTGTCTGAATTTTTGGGTTGTCTCTGGGA 236
                      *  *    * * ** ****   *  * *   *   *      *   ********* *   

consensus_7048#0      --GCGGCGGTGGCGCCGCCGCCAAGAAACCCGCCGCCGAGCCCAAGGCCGTCAAGGACGA 294
consensus_7048#1      TCGCAGGGGTGGAGTCGGTGGCGGCGGACGTGGCGACGAACAC--GGTCGTCGTGGCGGG 294
                        ** * ***** * **  * *     **  * ** *** * *  ** ****  **  * 

consensus_7048#0      TGGCGGCGAGAAGAAGGACGCCTAGGCGAAAGAGGAGAAGGGGAAGAAGCAACCGCCAGA 354
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      GGAGAAGAAACCCAAAGAGGAAACGGTGCTGCTCAGGATTCGCCTCCACTGCGATGGCTG 414
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      CGCCGACCGCATCAGGCGACGCATCTACAAGATCAAAGGGGTGAAGGAAGTGGTAATGGA 474
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      CGGCAATGCCAAGGATGAGGTGAAGGTGTCGGGCACAATGGACGTGCCGGCCATGCTGAC 534
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      CTATCTCACCGAGAAGCTCAACCGCGCCGTGGAGGCCGTGGCGCCCGGCAGCAAGAAAGA 594
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      CGAGAAGAAGAAGGACAAGGGCGGTGACGCCGACGGCGGCGAGAAGAAGAAAGACGCCGC 654
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      CGGCGGCGACAAGAAGGACAAAGGCAAGAGCATCGAGGTCGCCGGCCCGTCCACCGCCGC 714
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      CGCCGCGGCGTCCATGGCGCCGGCGCCGGCCGAGGCGAGCACGTACCACGTCTCGCCGTA 774
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      CGGCCACGGCTACTTCGCGTACCCGCAGCAGCAGGGACCTCCCCCCAGCTACTACCAGTA 834
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      CTACGGCGGCGGCAATGGCGACGGCGTGGGCTACGCCAACCCCAATGCCGGCGGCGCCGG 894
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      CGGCTACTACCACCCCCACCCCAACGACGTCCCTACCTACCAGCCGCCGCCGTCGTACCC 954
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      GCCGTACCCCTACCAGCTCGACATGTCGCCGGCGCCGCAGCTGTTCAGCGACGAGAACCC 1014
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      CAACGCCTGCTCGGTGATGTGATCGCCATGCCTCCGGCGACAGAGCTCAGAGGCCAATCT 1074
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      GACGACATGTACATACCGAGGACTTTAGACTTAGAAGATCAGAGGCATCCACCAAACGTG 1134
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      TTGTTATGCTTTCGATCAATTTTTGTCCAAACTTACCCCTTCTGTTGTAGCGTCATTTTT 1194
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      TTTAGATCAATTCTTGACTGGTTAAGCGAAATTTGATTTTAACTAGAGTATTAGCGGATG 1254
consensus_7048#1      ------------------------------------------------------------
                                                                                  

consensus_7048#0      AAATGGACTGATGGAGTGATGATCTTTTGGTCGCAAAATGCGTGCCTAGTCAGAG 1309
consensus_7048#1      -------------------------------------------------------