These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1647 fasta sequence [CTCCGCGGGCGTGGCTCGGACACCATGTTCAAGAGGGACGCCCCCAGCACTGACATGATCAGCGGCCTCCCCGAAGGAGTTCTTCACCGCATCATGTCCTTCCTCACCTTGCGCGAGGCAGTGCAGACGTGCGTGCTCTCGCGGCGGTGGCGCAACCTCTGGCTCTCCATGCCTCTCATCAACGCGGACTACAAGCAGTTCTTCGAGATGACGGACACTAAAGCGGGATACGACGAGGCGTTGGCGGTGGCGGTGCCGATGTTCAAGAGATTTGTGAACCGGCTGCTGGAACTCCGCGACCCTGTTGCCTCTATTGACAAGTTCTGTCTCTGGTACTCCATATCTGATGACAACGAGGATGACACCGAGTCGCAAGATGCTGCCGCCAACAGGTGGATCAGTCAAGCTTTGCAGAAGAAGGCCCGGGTTGTAGAGGTTTACGGTGACCTCGTCTTCGCTGACCTCTACCCGTTGGTGATTGATCACTCTGTGTTTACTTCAAGCTACCTGACAAAAGTTGTGTTCTCAAGTGTTCTTCTGGAAGATGGTTTCTTCAAGCAACTCGAGTCGGGCTGTCCAGCATTGGAAGATCTCTCCTTAGATGACTGCGTCATTAGCGGTGATGAGATCTCCTCCCAGACACTGAAGGTTTTGACCATCAAGGACACTAAGTTCTCCATGGAACACAAGACTTCTATTAATACTCCAAGTGTTACTTCTCTGACATTGTGGAGGCCTGCGCACGGCATAGTTGTACTGAAGGACATGGCATCAGTAGTGACTGCATCAGTTAAACCTAGTGAGTTTATTGATGAATTTGACGCTAGGGGTTTGCGCCAATATCTATGGGCACTTTCTGGTGTTAAAAATTTGGAGTTCTATTATCTGGGCGAGCTGACAATCGAAGGCAATTTGCAATTGTGTCCGAAATTCAACAATCTTGTCAACCTGACTCTCGGTCGATGGTGTCTGGATGCGAATTTCTATGCTTTAATTTTATTCATGCAGAACACACCAAGACTAGAGAAGCTAACACTGAAACTCCATCCGTTTCG-TTATCAGCAACAAAGAATCATTGGTGAGCTT-ACTGAAAGATCATTTACATGTGGTCATC-TTAAGATTGTTGAAGTC-ATATGCTCGGAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACTGCTCAGATTCATATCAAACACTAAAGCCAGATGCAGCATCAAGGGCCTCTAATTTTCTGGCCTGAGTAGATATGAAATATCAAAGGATCTCTTCTCTTGTTGTCCCATTGGAAAATAATATTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAAGACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTGTCTTGGATCTTGACTTCTTGAGTTGCTCCATTGCTTGTACCTTGTAATGTCACTCAGTGTTGTTCTATCCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTTTGCTGGAAAACCATTGATCACATGATCAGAACACTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTTTTTTTTTCTGATAAAAAAAAAAAAAAAA] [+] EMBL AK060187 [CTCCGCGGGCGTGGCTCGGACACCATGTTCAAGAGGGACGCCCCCAGCACTGACATGATCAGCGGCCTCCCCGAAGGAGTTCTTCACCGCATCATGTCCTTCCTCACCTTGCGCGAGGCAGTGCAGACGTGCGTGCTCTCGCGGCGGTGGCGCAACCTCTGGCTCTCCATGCCTCTCATCAACGCGGACTACAAGCAGTTCTTCGAGATGACGGACACTAAAGCGGGATACGACGAGGCGTTGGCGGTGGCGGTGCCGATGTTCAAGAGATTTGTGAACCGGCTGCTGGAACTCCGCGACCCTGTTGCCTCTATTGACAAGTTCTGTCTCTGGTACTCCATATCTGATGACAACGAGGATGACACCGAGTCGCAAGATGCTGCCGCCAACAGGTGGATCAGTCAAGCTTTGCAGAAGAAGGCCCGGGTTGTAGAGGTTTACGGTGACCTCGTCTTCGCTGACCTCTACCCGTTGGTGATTGATCACTCTGTGTTTACTTCAAGCTACCTGACAAAAGTTGTGTTCTCAAGTGTTCTTCTGGAAGATGGTTTCTTCAAGCAACTCGAGTCGGGCTGTCCAGCATTGGAAGATCTCTCCTTAGATGACTGCGTCATTAGCGGTGATGAGATCTCCTCCCAGACACTGAAGGTTTTGACCATCAAGGACACTAAGTTCTCCATGGAACACAAGACTTCTATTAATACTCCAAGTGTTACTTCTCTGACATTGTGGAGGCCTGCGCACGGCATAGTTGTACTGAAGGACATGGCATCAGTAGTGACTGCATCAGTTAAACCTAGTGAGTTTATTGATGAATTTGACGCTAGGGGTTTGCGCCAATATCTATGGGCACTTTCTGGTGTTAAAAATTTGGAGTTCTATTATCTGGGCGAGCTGACAATCGAAGGCAATTTGCAATTGTGTCCGAAATTCAACAATCTTGTCAACCTGACTCTCGGTCGATGGTGTCTGGATGCGAATTTCTATGCTTTAATTTTATTCATGCAGAACACACCAAGACTAGAGAAGCTAACACTGAAACTCCATCCGTTTCG TTATCAGCAACAAAGAATCATTGGTGAGCTT ACTGAAAGATCATTTACATGTGGTCATC TTAAGATTGTTGAAGTC ATATGCTCGGAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACTGCTCAGATTCATATCAAACACTAAAGCCAGATGCAGCATCAAGGGCCTCTAATTTTCTGGCCTGAGTAGATATGAAATATCAAAGGATCTCTTCTCTTGTTGTCCCATTGGAAAATAATATTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAAGACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTGTCTTGGATCTTGACTTCTTGAGTTGCTCCATTGCTTGTACCTTGTAATGTCACTCAGTGTTGTTCTATCCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTTTGCTGGAAAACCATTGATCACATGATCAGAACACTGCATGTTACATGTTTGAGTATCCCATATGGGATTC ] [+] EMBL OSR29461A [ ATGCGAATTTCTATGCTTTAATTTTATTCATGCAGAACACACCAAGACTAGAGAAGCTAACACTGAAACTCCATCCGTTTCG TTATCAGCAACAAAGAATCATTGGTGAGCTT ACTGAAAGATCATTTACATGTGGTCATC TTAAGATTGTTGAAGTC ATATGCTCGGAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACTGCTCAGATTCATATCAAACACTAAAGCCAGATGCAGCATCAAGGGCCTCTAATTTTCTG ] [+] EMBL AU095497 [ CTACCACTGAAACTCCATCCGTTTCGNTTATCAGCANCAAAGAATCATTGGTGAGCTTAACTGAAAGATCATTTACATGTGGTCATCTTTAAGATTGTTGAAGTCAATATGCTCGGAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACTGCTCAGATTCATATCAAACACTAAAGCCAGATGCAGCATCAAGGGCCTCTAATTTTCTGGCCTGAGTAGATATGAAATATCAAAGGATCTCTTCTCTTGTTGTCCCATTGAAAAATAATATTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAAGACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTGTCTTGGATCTTGACTTCTTGAGTTGCTCCATTGCTTGTACCTTGTAATGTCACTCAGTGTTGTTCTATTCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTTTGCTGGAAAACCATTGATCACATGATCAGAACACTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTTTTTTTTTCTGATAAAAAAAAAAAAAAAA] consensusID : consensus_7050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [AACCTAAAGCCAGATCAGCATCAAGGGCCTCTAATTTTCTGGCCTGAGTAGATATGAAATATCCAAGGATCTCTTCTCTTGTTGTCCCCTCGAAAAATAATATTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAAGACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTATCTTGGATCTTGACTTCTTGAGTTGCTCCCTTGCTTGTACCTTGTAATGTCACTCAGTGTTGTTCTATTCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTCTTGCTAGGAAACCCTTGATCACATGATCAGAACCCTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTTTTTTTTTCTGATAGTTTTGTTACATCCTGTGATCTGCTTTCAATTTTAGTTGATATATCATCAGCTTTTCCCCTTGTCCAAAAAAAAAA] [+] EMBL BI798384 [AACCTAAAGCCAGATCAGCATCAAGGGCCTCTAATTTTCTGGCCTGAGTAGATATGAAATATCCAAGGATCTCTTCTCTTGTTGTCCCCTCGAAAAATAATATTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAAGACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTATCTTGGATCTTGACTTCTTGAGTTGCTCCCTTGCTTGTACCTTGTAATGTCACTCAGTGTTGTTCTATTCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTCTTGCTAGGAAACCCTTGATCACATGATCAGAACCCTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTTTTTTTTTCTGATAGTTTTGTTACATCCTGTGATCTGCTTTCAATTTTAGTTGATATATCATCAGCTTTTCCCCTTGTCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7050#0 CTCCGCGGGCGTGGCTCGGACACCATGTTCAAGAGGGACGCCCCCAGCACTGACATGATC 60 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 AGCGGCCTCCCCGAAGGAGTTCTTCACCGCATCATGTCCTTCCTCACCTTGCGCGAGGCA 120 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 GTGCAGACGTGCGTGCTCTCGCGGCGGTGGCGCAACCTCTGGCTCTCCATGCCTCTCATC 180 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 AACGCGGACTACAAGCAGTTCTTCGAGATGACGGACACTAAAGCGGGATACGACGAGGCG 240 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 TTGGCGGTGGCGGTGCCGATGTTCAAGAGATTTGTGAACCGGCTGCTGGAACTCCGCGAC 300 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 CCTGTTGCCTCTATTGACAAGTTCTGTCTCTGGTACTCCATATCTGATGACAACGAGGAT 360 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 GACACCGAGTCGCAAGATGCTGCCGCCAACAGGTGGATCAGTCAAGCTTTGCAGAAGAAG 420 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 GCCCGGGTTGTAGAGGTTTACGGTGACCTCGTCTTCGCTGACCTCTACCCGTTGGTGATT 480 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 GATCACTCTGTGTTTACTTCAAGCTACCTGACAAAAGTTGTGTTCTCAAGTGTTCTTCTG 540 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 GAAGATGGTTTCTTCAAGCAACTCGAGTCGGGCTGTCCAGCATTGGAAGATCTCTCCTTA 600 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 GATGACTGCGTCATTAGCGGTGATGAGATCTCCTCCCAGACACTGAAGGTTTTGACCATC 660 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 AAGGACACTAAGTTCTCCATGGAACACAAGACTTCTATTAATACTCCAAGTGTTACTTCT 720 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 CTGACATTGTGGAGGCCTGCGCACGGCATAGTTGTACTGAAGGACATGGCATCAGTAGTG 780 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 ACTGCATCAGTTAAACCTAGTGAGTTTATTGATGAATTTGACGCTAGGGGTTTGCGCCAA 840 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 TATCTATGGGCACTTTCTGGTGTTAAAAATTTGGAGTTCTATTATCTGGGCGAGCTGACA 900 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 ATCGAAGGCAATTTGCAATTGTGTCCGAAATTCAACAATCTTGTCAACCTGACTCTCGGT 960 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 CGATGGTGTCTGGATGCGAATTTCTATGCTTTAATTTTATTCATGCAGAACACACCAAGA 1020 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 CTAGAGAAGCTAACACTGAAACTCCATCCGTTTCGTTATCAGCAACAAAGAATCATTGGT 1080 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 GAGCTTACTGAAAGATCATTTACATGTGGTCATCTTAAGATTGTTGAAGTCATATGCTCG 1140 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 GAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACT 1200 consensus_7050#1 ------------------------------------------------------------ consensus_7050#0 GCTCAGATTCATATCAAACACTAAAGCCAGATGCAGCATCAAGGGCCTCTAATTTTCTGG 1260 consensus_7050#1 ----------------AAC-CTAAAGCCAGAT-CAGCATCAAGGGCCTCTAATTTTCTGG 42 *** ************ *************************** consensus_7050#0 CCTGAGTAGATATGAAATATCAAAGGATCTCTTCTCTTGTTGTCCCATTGGAAAATAATA 1320 consensus_7050#1 CCTGAGTAGATATGAAATATCCAAGGATCTCTTCTCTTGTTGTCCCCTCGAAAAATAATA 102 ********************* ************************ * * ********* consensus_7050#0 TTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAA 1380 consensus_7050#1 TTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAA 162 ************************************************************ consensus_7050#0 GACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTGTC 1440 consensus_7050#1 GACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTATC 222 ********************************************************* ** consensus_7050#0 TTGGATCTTGACTTCTTGAGTTGCTCCATTGCTTGTACCTTGTAATGTCACTCAGTGTTG 1500 consensus_7050#1 TTGGATCTTGACTTCTTGAGTTGCTCCCTTGCTTGTACCTTGTAATGTCACTCAGTGTTG 282 *************************** ******************************** consensus_7050#0 TTCTATCCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGT-TTGCTGGAAAACCATTG 1559 consensus_7050#1 TTCTATTCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTCTTGCTAGGAAACCCTTG 342 ****** *********************************** ***** * ***** *** consensus_7050#0 ATCACATGATCAGAACACTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTT 1619 consensus_7050#1 ATCACATGATCAGAACCCTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTT 402 **************** ******************************************* consensus_7050#0 TTTTTTTCTGATAAAAAAAAAAAAAAAA-------------------------------- 1647 consensus_7050#1 TTTTTTTCTGATAGTTTTGTTACATCCTGTGATCTGCTTTCAATTTTAGTTGATATATCA 462 ************* * * consensus_7050#0 ----------------------------- consensus_7050#1 TCAGCTTTTCCCCTTGTCCAAAAAAAAAA 491 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||