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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1647 fasta sequence
[CTCCGCGGGCGTGGCTCGGACACCATGTTCAAGAGGGACGCCCCCAGCACTGACATGATCAGCGGCCTCCCCGAAGGAGTTCTTCACCGCATCATGTCCTTCCTCACCTTGCGCGAGGCAGTGCAGACGTGCGTGCTCTCGCGGCGGTGGCGCAACCTCTGGCTCTCCATGCCTCTCATCAACGCGGACTACAAGCAGTTCTTCGAGATGACGGACACTAAAGCGGGATACGACGAGGCGTTGGCGGTGGCGGTGCCGATGTTCAAGAGATTTGTGAACCGGCTGCTGGAACTCCGCGACCCTGTTGCCTCTATTGACAAGTTCTGTCTCTGGTACTCCATATCTGATGACAACGAGGATGACACCGAGTCGCAAGATGCTGCCGCCAACAGGTGGATCAGTCAAGCTTTGCAGAAGAAGGCCCGGGTTGTAGAGGTTTACGGTGACCTCGTCTTCGCTGACCTCTACCCGTTGGTGATTGATCACTCTGTGTTTACTTCAAGCTACCTGACAAAAGTTGTGTTCTCAAGTGTTCTTCTGGAAGATGGTTTCTTCAAGCAACTCGAGTCGGGCTGTCCAGCATTGGAAGATCTCTCCTTAGATGACTGCGTCATTAGCGGTGATGAGATCTCCTCCCAGACACTGAAGGTTTTGACCATCAAGGACACTAAGTTCTCCATGGAACACAAGACTTCTATTAATACTCCAAGTGTTACTTCTCTGACATTGTGGAGGCCTGCGCACGGCATAGTTGTACTGAAGGACATGGCATCAGTAGTGACTGCATCAGTTAAACCTAGTGAGTTTATTGATGAATTTGACGCTAGGGGTTTGCGCCAATATCTATGGGCACTTTCTGGTGTTAAAAATTTGGAGTTCTATTATCTGGGCGAGCTGACAATCGAAGGCAATTTGCAATTGTGTCCGAAATTCAACAATCTTGTCAACCTGACTCTCGGTCGATGGTGTCTGGATGCGAATTTCTATGCTTTAATTTTATTCATGCAGAACACACCAAGACTAGAGAAGCTAACACTGAAACTCCATCCGTTTCG-TTATCAGCAACAAAGAATCATTGGTGAGCTT-ACTGAAAGATCATTTACATGTGGTCATC-TTAAGATTGTTGAAGTC-ATATGCTCGGAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACTGCTCAGATTCATATCAAACACTAAAGCCAGATGCAGCATCAAGGGCCTCTAATTTTCTGGCCTGAGTAGATATGAAATATCAAAGGATCTCTTCTCTTGTTGTCCCATTGGAAAATAATATTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAAGACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTGTCTTGGATCTTGACTTCTTGAGTTGCTCCATTGCTTGTACCTTGTAATGTCACTCAGTGTTGTTCTATCCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTTTGCTGGAAAACCATTGATCACATGATCAGAACACTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTTTTTTTTTCTGATAAAAAAAAAAAAAAAA]
[+] EMBL AK060187 [CTCCGCGGGCGTGGCTCGGACACCATGTTCAAGAGGGACGCCCCCAGCACTGACATGATCAGCGGCCTCCCCGAAGGAGTTCTTCACCGCATCATGTCCTTCCTCACCTTGCGCGAGGCAGTGCAGACGTGCGTGCTCTCGCGGCGGTGGCGCAACCTCTGGCTCTCCATGCCTCTCATCAACGCGGACTACAAGCAGTTCTTCGAGATGACGGACACTAAAGCGGGATACGACGAGGCGTTGGCGGTGGCGGTGCCGATGTTCAAGAGATTTGTGAACCGGCTGCTGGAACTCCGCGACCCTGTTGCCTCTATTGACAAGTTCTGTCTCTGGTACTCCATATCTGATGACAACGAGGATGACACCGAGTCGCAAGATGCTGCCGCCAACAGGTGGATCAGTCAAGCTTTGCAGAAGAAGGCCCGGGTTGTAGAGGTTTACGGTGACCTCGTCTTCGCTGACCTCTACCCGTTGGTGATTGATCACTCTGTGTTTACTTCAAGCTACCTGACAAAAGTTGTGTTCTCAAGTGTTCTTCTGGAAGATGGTTTCTTCAAGCAACTCGAGTCGGGCTGTCCAGCATTGGAAGATCTCTCCTTAGATGACTGCGTCATTAGCGGTGATGAGATCTCCTCCCAGACACTGAAGGTTTTGACCATCAAGGACACTAAGTTCTCCATGGAACACAAGACTTCTATTAATACTCCAAGTGTTACTTCTCTGACATTGTGGAGGCCTGCGCACGGCATAGTTGTACTGAAGGACATGGCATCAGTAGTGACTGCATCAGTTAAACCTAGTGAGTTTATTGATGAATTTGACGCTAGGGGTTTGCGCCAATATCTATGGGCACTTTCTGGTGTTAAAAATTTGGAGTTCTATTATCTGGGCGAGCTGACAATCGAAGGCAATTTGCAATTGTGTCCGAAATTCAACAATCTTGTCAACCTGACTCTCGGTCGATGGTGTCTGGATGCGAATTTCTATGCTTTAATTTTATTCATGCAGAACACACCAAGACTAGAGAAGCTAACACTGAAACTCCATCCGTTTCG TTATCAGCAACAAAGAATCATTGGTGAGCTT ACTGAAAGATCATTTACATGTGGTCATC TTAAGATTGTTGAAGTC ATATGCTCGGAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACTGCTCAGATTCATATCAAACACTAAAGCCAGATGCAGCATCAAGGGCCTCTAATTTTCTGGCCTGAGTAGATATGAAATATCAAAGGATCTCTTCTCTTGTTGTCCCATTGGAAAATAATATTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAAGACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTGTCTTGGATCTTGACTTCTTGAGTTGCTCCATTGCTTGTACCTTGTAATGTCACTCAGTGTTGTTCTATCCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTTTGCTGGAAAACCATTGATCACATGATCAGAACACTGCATGTTACATGTTTGAGTATCCCATATGGGATTC ]
[+] EMBL OSR29461A [ ATGCGAATTTCTATGCTTTAATTTTATTCATGCAGAACACACCAAGACTAGAGAAGCTAACACTGAAACTCCATCCGTTTCG TTATCAGCAACAAAGAATCATTGGTGAGCTT ACTGAAAGATCATTTACATGTGGTCATC TTAAGATTGTTGAAGTC ATATGCTCGGAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACTGCTCAGATTCATATCAAACACTAAAGCCAGATGCAGCATCAAGGGCCTCTAATTTTCTG ]
[+] EMBL AU095497 [ CTACCACTGAAACTCCATCCGTTTCGNTTATCAGCANCAAAGAATCATTGGTGAGCTTAACTGAAAGATCATTTACATGTGGTCATCTTTAAGATTGTTGAAGTCAATATGCTCGGAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACTGCTCAGATTCATATCAAACACTAAAGCCAGATGCAGCATCAAGGGCCTCTAATTTTCTGGCCTGAGTAGATATGAAATATCAAAGGATCTCTTCTCTTGTTGTCCCATTGAAAAATAATATTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAAGACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTGTCTTGGATCTTGACTTCTTGAGTTGCTCCATTGCTTGTACCTTGTAATGTCACTCAGTGTTGTTCTATTCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTTTGCTGGAAAACCATTGATCACATGATCAGAACACTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTTTTTTTTTCTGATAAAAAAAAAAAAAAAA]
consensusID : consensus_7050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[AACCTAAAGCCAGATCAGCATCAAGGGCCTCTAATTTTCTGGCCTGAGTAGATATGAAATATCCAAGGATCTCTTCTCTTGTTGTCCCCTCGAAAAATAATATTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAAGACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTATCTTGGATCTTGACTTCTTGAGTTGCTCCCTTGCTTGTACCTTGTAATGTCACTCAGTGTTGTTCTATTCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTCTTGCTAGGAAACCCTTGATCACATGATCAGAACCCTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTTTTTTTTTCTGATAGTTTTGTTACATCCTGTGATCTGCTTTCAATTTTAGTTGATATATCATCAGCTTTTCCCCTTGTCCAAAAAAAAAA]
[+] EMBL BI798384 [AACCTAAAGCCAGATCAGCATCAAGGGCCTCTAATTTTCTGGCCTGAGTAGATATGAAATATCCAAGGATCTCTTCTCTTGTTGTCCCCTCGAAAAATAATATTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAAGACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTATCTTGGATCTTGACTTCTTGAGTTGCTCCCTTGCTTGTACCTTGTAATGTCACTCAGTGTTGTTCTATTCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTCTTGCTAGGAAACCCTTGATCACATGATCAGAACCCTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTTTTTTTTTCTGATAGTTTTGTTACATCCTGTGATCTGCTTTCAATTTTAGTTGATATATCATCAGCTTTTCCCCTTGTCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7050#0 CTCCGCGGGCGTGGCTCGGACACCATGTTCAAGAGGGACGCCCCCAGCACTGACATGATC 60
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 AGCGGCCTCCCCGAAGGAGTTCTTCACCGCATCATGTCCTTCCTCACCTTGCGCGAGGCA 120
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 GTGCAGACGTGCGTGCTCTCGCGGCGGTGGCGCAACCTCTGGCTCTCCATGCCTCTCATC 180
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 AACGCGGACTACAAGCAGTTCTTCGAGATGACGGACACTAAAGCGGGATACGACGAGGCG 240
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 TTGGCGGTGGCGGTGCCGATGTTCAAGAGATTTGTGAACCGGCTGCTGGAACTCCGCGAC 300
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 CCTGTTGCCTCTATTGACAAGTTCTGTCTCTGGTACTCCATATCTGATGACAACGAGGAT 360
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 GACACCGAGTCGCAAGATGCTGCCGCCAACAGGTGGATCAGTCAAGCTTTGCAGAAGAAG 420
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 GCCCGGGTTGTAGAGGTTTACGGTGACCTCGTCTTCGCTGACCTCTACCCGTTGGTGATT 480
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 GATCACTCTGTGTTTACTTCAAGCTACCTGACAAAAGTTGTGTTCTCAAGTGTTCTTCTG 540
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 GAAGATGGTTTCTTCAAGCAACTCGAGTCGGGCTGTCCAGCATTGGAAGATCTCTCCTTA 600
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 GATGACTGCGTCATTAGCGGTGATGAGATCTCCTCCCAGACACTGAAGGTTTTGACCATC 660
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 AAGGACACTAAGTTCTCCATGGAACACAAGACTTCTATTAATACTCCAAGTGTTACTTCT 720
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 CTGACATTGTGGAGGCCTGCGCACGGCATAGTTGTACTGAAGGACATGGCATCAGTAGTG 780
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 ACTGCATCAGTTAAACCTAGTGAGTTTATTGATGAATTTGACGCTAGGGGTTTGCGCCAA 840
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 TATCTATGGGCACTTTCTGGTGTTAAAAATTTGGAGTTCTATTATCTGGGCGAGCTGACA 900
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 ATCGAAGGCAATTTGCAATTGTGTCCGAAATTCAACAATCTTGTCAACCTGACTCTCGGT 960
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 CGATGGTGTCTGGATGCGAATTTCTATGCTTTAATTTTATTCATGCAGAACACACCAAGA 1020
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 CTAGAGAAGCTAACACTGAAACTCCATCCGTTTCGTTATCAGCAACAAAGAATCATTGGT 1080
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 GAGCTTACTGAAAGATCATTTACATGTGGTCATCTTAAGATTGTTGAAGTCATATGCTCG 1140
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 GAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACT 1200
consensus_7050#1 ------------------------------------------------------------
consensus_7050#0 GCTCAGATTCATATCAAACACTAAAGCCAGATGCAGCATCAAGGGCCTCTAATTTTCTGG 1260
consensus_7050#1 ----------------AAC-CTAAAGCCAGAT-CAGCATCAAGGGCCTCTAATTTTCTGG 42
*** ************ ***************************
consensus_7050#0 CCTGAGTAGATATGAAATATCAAAGGATCTCTTCTCTTGTTGTCCCATTGGAAAATAATA 1320
consensus_7050#1 CCTGAGTAGATATGAAATATCCAAGGATCTCTTCTCTTGTTGTCCCCTCGAAAAATAATA 102
********************* ************************ * * *********
consensus_7050#0 TTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAA 1380
consensus_7050#1 TTCTTTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAA 162
************************************************************
consensus_7050#0 GACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTGTC 1440
consensus_7050#1 GACTAGTTTATCTTCCGCTCTTGTTTGGTGCTACGACTTGAGTGCACCCAATCAGTTATC 222
********************************************************* **
consensus_7050#0 TTGGATCTTGACTTCTTGAGTTGCTCCATTGCTTGTACCTTGTAATGTCACTCAGTGTTG 1500
consensus_7050#1 TTGGATCTTGACTTCTTGAGTTGCTCCCTTGCTTGTACCTTGTAATGTCACTCAGTGTTG 282
*************************** ********************************
consensus_7050#0 TTCTATCCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGT-TTGCTGGAAAACCATTG 1559
consensus_7050#1 TTCTATTCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTCTTGCTAGGAAACCCTTG 342
****** *********************************** ***** * ***** ***
consensus_7050#0 ATCACATGATCAGAACACTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTT 1619
consensus_7050#1 ATCACATGATCAGAACCCTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTT 402
**************** *******************************************
consensus_7050#0 TTTTTTTCTGATAAAAAAAAAAAAAAAA-------------------------------- 1647
consensus_7050#1 TTTTTTTCTGATAGTTTTGTTACATCCTGTGATCTGCTTTCAATTTTAGTTGATATATCA 462
************* * *
consensus_7050#0 -----------------------------
consensus_7050#1 TCAGCTTTTCCCCTTGTCCAAAAAAAAAA 491
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||