|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2304 fasta sequence
[CCCACCACCGCTCTTCCGCGCTTCGCTTCTCTCGCCGTCTCGCGGCTGCGCGGCGCGGCGCTCTCATCCATCCCCTCCTCCCGCTTCCCCCACCCGCCGCCCGATCTCGACGGCGGATCGCCCCGGGATGGGCTCCGACGAAGACGAGCTGCTCGACGACGAGGAGTACTACTACTACTGCAGCGACGGGGAGTGTAGCGGCGGCGGGAGCGGGAGCGAC--GAGGATGAGGAGTTCGGGGGCCGCGGGAGCGAC-GAGG-GCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAGGTGCTAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTACAAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTTCCCATTTCTATTGTCATGAATGTTGGGAAGGGTATATTAGTGCTGCAGTAAATGATGGTCCAGGGTGTTTGGTGTTGCAGTGCCCTGAACCATCTTGTGATGCAATCGTTCTTGAAGATATGATTAATAGTCTGACGAAAGATGAGGATAAAGTAAAGTATGCACGATTTGTATTATGGTCATATATTGGAGTTAACAACAAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGGTTATGCCTAGGTGCATGGTCAGATCATGGAGATGGGACTGGTGGCTTTTATGCTTGCAATCGTTATCAATCAGCAAAGATGGGAGGCATGTATGATGAGGCTGAAGCAAGGAGAGAGAGAGCTAAAAATTCGCTTGAGAGATACATGCATTATTATGAGCGCTGGGCGTCCAATCAAACATCAAGGCAGAAAGCACAAGCAGATCTGCAAAAAGTTGAAAATGAAGATCTTACAAAGTTAAGTGATGTTGTTGGTATACCAGAGACCCAACTAAAGTTCATACCTGAAGCTTGGTCACAATCATAGAATGCAGGCGAGTGCTGAAATGGACATATGCTTATGGGTACTATCTACACAACAAAGCGAAGAGTGATTTTTTTGTGTACCTCCAAGGTGAAGCTGAGTCTGGTTTGGAGCGTCTTCATAAATGTGCCGAGAAGGATATGCGTGAATTTTTACCTACAGCGGATTCCACTCAACCTTCTCTTTCATTGCAAGACTTCGGTGAATTTCGTGTGAAGCTTTCTGGTCTAACAAGCGTAACCCGCAACTACTTCGAGAACCTTGTTCAAACACTGGAAGCGGGTCTGCAGGATGTCCGCGCTACAGACCAATCAGCTTCAGTCAGTACCTCCAGCTCCAAGAAGCCTCCCACCAACACCAAGGGGAAGTCGGGGCGGAGTAAGGTGGCGAGAACATCGCAGGAGCGCTCAGGCGACAGATGGCCATGCGACCGCTGCACTTTCATCAACCCGTCCTCTACGAACTCATGCAACATGTGCGGCAGGAACAAGCCCCGCCGCAGATAGGAAGATTGGTCAAAATGCAGTTGTGCAAAGGAACACCTTCTCACTGGGATTCTGGTCGAACAAAGTGGTGCTCATTTGGCCCAACACTCTGGTGCTATGAACATGAAGCAGACTCTCCCAGGGATCTGATGATGCTCAGAGGAGATGTAAGAAACGAACAATCTCAGGAATGCAGCGCAAGAGGCTTGGACAAAATTAGGTAGTAGTAAAACATATATGCGTGTGTGTTGTTAGCTGTAAATATTACTTCATGGAGAAAATTAGGAAAGTACCAGCCTGGAAAATCTGCGAGTTATAAAATAGGATTGCATGTGAGAATGACATGTGGGGTCCTCACATGTGATTGTATTTTTCAACTTCGTGAATTCAGCTATGGTTCAAATTAAAATTGGCCTGTATGGATGAG]
[+] EMBL AK106673 [CCCACCACCGCTCTTCCGCGCTTCGCTTCTCTCGCCGTCTCGCGGCTGCGCGGCGCGGCGCTCTCATCCATCCCCTCCTCCCGCTTCCCCCACCCGCCGCCCGATCTCGACGGCGGATCGCCCCGGGATGGGCTCCGACGAAGACGAGCTGCTCGACGACGAGGAGTACTACTACTACTGCAGCGACGGGGAGTGTAGCGGCGGCGGGAGCGGGAGCGAC GAGGATGAGGAGTTCGGGGGCCGCGGGAGCGAC GAGG GCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAGGTGCTAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTACAAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTTCCCATTTCTATTGTCATGAATGTTGGGAAGGGTATATTAGTGCTGCAGTAAATGATGGTCCAGGGTGTTTGGTGTTGCAGTGCCCTGAACCATCTTGTGATGCAATCGTTCTTGAAGATATGATTAATAGTCTGACGAAAGATGAGGATAAAGTAAAGTATGCACGATTTGTATTATGGTCATATATTGGAGTTAACAACAAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGGTTATGCCTAGGTGCATGGTCAGATCATGGAGATGGGACTGGTGGCTTTTATGCTTGCAATCGTTATCAATCAGCAAAGATGGGAGGCATGTATGATGAGGCTGAAGCAAGGAGAGAGAGAGCTAAAAATTCGCTTGAGAGATACATGCATTATTATGAGCGCTGGGCGTCCAATCAAACATCAAGGCAGAAAGCACAAGCAGATCTGCAAAAAGTTGAAAATGAAGATCTTACAAAGTTAAGTGATGTTGTTGGTATACCAGAGACCCAACTAAAGTTCATACCTGAAGCTTGGTCACAATCATAGAATGCAGGCGAGTGCTGAAATGGACATATGCTTATGGGTACTATCTACACAACAAAGCGAAGAGTGATTTTTTTGTGTACCTCCAAGGTGAAGCTGAGTCTGGTTTGGAGCGTCTTCATAAATGTGCCGAGAAGGATATGCGTGAATTTTTACCTACAGCGGATTCCACTCAACCTTCTCTTTCATTGCAAGACTTCGGTGAATTTCGTGTGAAGCTTTCTGGTCTAACAAGCGTAACCCGCAACTACTTCGAGAACCTTGTTCAAACACTGGAAGCGGGTCTGCAGGATGTCCGCGCTACAGACCAATCAGCTTCAGTCAGTACCTCCAGCTCCAAGAAGCCTCCCACCAACACCAAGGGGAAGTCGGGGCGGAGTAAGGTGGCGAGAACATCGCAGGAGCGCTCAGGCGACAGATGGCCATGCGACCGCTGCACTTTCATCAACCCGTCCTCTACGAACTCATGCAACATGTGCGGCAGGAACAAGCCCCGCCGCAGATAGGAAGATTGGTCAAAATGCAGTTGTGCAAAGGAACACCTTCTCACTGGGATTCTGGTCGAACAAAGTGGTGCTCATTTGGCCCAACACTCTGGTGCTATGAACATGAAGCAGACTCTCCCAGGGATCTGATGATGCTCAGAGGAGATGTAAGAAACGAACAATCTCAGGAATGCAGCGCAAGAGGCTTGGACAAAATTAGGTAGTAGTAAAACATATATGCGTGTGTGTTGTTAGCTGTAAATATTACTTCATGGAGAAAATTAGGAAAGTACCAGCCTGGAAAATCTGCGAGTTATAAAATAGGATTGCATGTGAGAATGACATGTGGGGTCCTCACATGTGATTGTATTTTTCAACTTCGTGAATTCAGCTATGGTTCAAATTAAAATTGGCCTGTATGGATGAG]
[+] EMBL OS1042A [ TCTTCCGCGCTTCGCTTCTCTCGCCGTCTCGCGGCTGCGCGGCGCGGCGCTCTCATCCATNCCCTCCTCCCGCTTCCCCCACCCGCCGCCCGATCTCGACGGCGGATCGCCCCGGGATGGGCTCCGACGAAGACGAGCTGCTCGACGACGAGGAGTACTACTACTACTGCAGCGACGGGGAGTGTAGCGNCGGCGGGAGCGGGAGC ACTGGAGGATGAGGAGTTCGGGGGCCGCGGGAGCANCGGAGGNGCTGTGAGGCCGACGAGGT ]
[+] EMBL CB660724 [ ACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTTCCCATTTCTATTGTCATGAATGTTGGGAAGGGTATATTAGTGCTGCAGTAAATGATGGTCCAGGGTGTTTGGTGTTGCAGTGCCCTGAACCATCTTGTGATGCAATCGTTCTTGAAGATATGATTAATAGTCTGACGAAAGATGAGGATAAAGTAAAGTATGCACGATTTGTATTATGGTCATATATTGGAGTTAACAACAAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGGTTATGCCTAGGTGCATGGTCAGATCATGGAGATGGGACTGGTGGCTTTTATGCTTGCAATCGTTATCAATCAGCAAAGATGGGAGGCATGTATGATGAGGCTGAAGCAAGGAGAGAGAGAGCTAAAAATTCGCTTGAGAGATACATGCATTATTATGAGCGCTGGGCGTCCAATCAAACATTCAGGCAGAAAGCACAAGCAGATCTGCTAAAAGTTGAAAATG ]
consensusID : consensus_7056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[TCCAAATAACTCCATATAAGTTGCTGGTCTTTTCATTCTCTCCCTACAACTTAATTTCATACAAGATATTCTTCATAAGTTCTTTTTCTTTTCAATTTCCCCCATTTGTCTTGTTTCTAGTGATTCTCGTCATGCTCATCGATTTCTCACATCCTATGCACCTCCCGCATGAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTACAAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTT]
[+] EMBL CB641374 [TCCAAATAACTCCATATAAGTTGCTGGTCTTTTCATTCTCTCCCTACAACTTAATTTCATACAAGATATTCTTCATAAGTTCTTTTTCTTTTCAATTTCCCCCATTTGTCTTGTTTCTAGTGATTCTCGTCATGCTCATCGATTTCTCACATCCTATGCACCTCCCGCATGAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGCCGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTACAAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGTTCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGAATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7056#0 CCCACCACCGCTCTTCCGCGCTTCGCTTCTCTCGCCGTCTCGCGGCTGCGCGGCGCGGCG 60
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 CTCTCATCCATCCCCTCCTCCCGCTTCCCCCACCCGCCGCCCGATCTCGACGGCGGATCG 120
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 CCCCGGGATGGGCTCCGACGAAGACGAGCTGCTCGACGACGAGGAGTACTACTACTACTG 180
consensus_7056#1 --TCCAAATAA-CTCC-----ATATAAGTTGCTGGTCTTTTCATTCTCTCCCTACAACT- 51
* ** **** * * ** **** * * * **** ***
consensus_7056#0 CAGCGACGGGGAGTGTAGCGGCGGCGGGAGCGGGAGCGACGAGGATGAGGAGTTCGGGGG 240
consensus_7056#1 TAATTTCATACAAGATATTCTTCATAAGTTCTTTTTCTTTTCAATTTCC---CCCATTTG 108
* * * ** * * * * * *
consensus_7056#0 CCGCGGGAGCGACGAGGGCTGTGAGGCCGACGAGGTCGTCTCCACGCGCGAGCAG---GT 297
consensus_7056#1 TCTTGTTTCTAGTGATTCTCGTCATGCTCATCGATTTCTCACATCCTATGCACCTCCCGC 168
* * ** ** * ** * * ** * * * * *
consensus_7056#0 GCTAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGC 357
consensus_7056#1 ATGAGATATGTTGTGTTGACCGAAGATGATATACGCGAGCGACAAGAGGAAATGATAAGC 228
*********************************************************
consensus_7056#0 CGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTAC 417
consensus_7056#1 CGTGTGTCTGCAATATTTTCAGTTCCAAGGGAATCAGCATGCGTCCTCCTTCGTCACTAC 288
************************************************************
consensus_7056#0 AAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGT 477
consensus_7056#1 AAATGGAGTATTAGCAAGCTAAGTGATGACTGGTTCGCAGATGAAGAAAATGTCCGCCGT 348
************************************************************
consensus_7056#0 TCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGA 537
consensus_7056#1 TCTGTTGGCTTGCCATCAAATGTTGTTCATGTTCCTGACTGTCCTGAGCTAACTTGTGGA 408
************************************************************
consensus_7056#0 ATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTTCCCATTTCTAT 597
consensus_7056#1 ATATGTTTTGAAGGATGTGCTGCAAATGCAATGAGCTGTGCTGGTTGTT----------- 457
*************************************************
consensus_7056#0 TGTCATGAATGTTGGGAAGGGTATATTAGTGCTGCAGTAAATGATGGTCCAGGGTGTTTG 657
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GTGTTGCAGTGCCCTGAACCATCTTGTGATGCAATCGTTCTTGAAGATATGATTAATAGT 717
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 CTGACGAAAGATGAGGATAAAGTAAAGTATGCACGATTTGTATTATGGTCATATATTGGA 777
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GTTAACAACAAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTT 837
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCA 897
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGC 957
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAA 1017
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 CGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTT 1077
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GAGTTTTGCTGGTTATGCCTAGGTGCATGGTCAGATCATGGAGATGGGACTGGTGGCTTT 1137
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 TATGCTTGCAATCGTTATCAATCAGCAAAGATGGGAGGCATGTATGATGAGGCTGAAGCA 1197
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 AGGAGAGAGAGAGCTAAAAATTCGCTTGAGAGATACATGCATTATTATGAGCGCTGGGCG 1257
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 TCCAATCAAACATCAAGGCAGAAAGCACAAGCAGATCTGCAAAAAGTTGAAAATGAAGAT 1317
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 CTTACAAAGTTAAGTGATGTTGTTGGTATACCAGAGACCCAACTAAAGTTCATACCTGAA 1377
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GCTTGGTCACAATCATAGAATGCAGGCGAGTGCTGAAATGGACATATGCTTATGGGTACT 1437
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 ATCTACACAACAAAGCGAAGAGTGATTTTTTTGTGTACCTCCAAGGTGAAGCTGAGTCTG 1497
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GTTTGGAGCGTCTTCATAAATGTGCCGAGAAGGATATGCGTGAATTTTTACCTACAGCGG 1557
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 ATTCCACTCAACCTTCTCTTTCATTGCAAGACTTCGGTGAATTTCGTGTGAAGCTTTCTG 1617
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GTCTAACAAGCGTAACCCGCAACTACTTCGAGAACCTTGTTCAAACACTGGAAGCGGGTC 1677
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 TGCAGGATGTCCGCGCTACAGACCAATCAGCTTCAGTCAGTACCTCCAGCTCCAAGAAGC 1737
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 CTCCCACCAACACCAAGGGGAAGTCGGGGCGGAGTAAGGTGGCGAGAACATCGCAGGAGC 1797
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GCTCAGGCGACAGATGGCCATGCGACCGCTGCACTTTCATCAACCCGTCCTCTACGAACT 1857
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 CATGCAACATGTGCGGCAGGAACAAGCCCCGCCGCAGATAGGAAGATTGGTCAAAATGCA 1917
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GTTGTGCAAAGGAACACCTTCTCACTGGGATTCTGGTCGAACAAAGTGGTGCTCATTTGG 1977
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 CCCAACACTCTGGTGCTATGAACATGAAGCAGACTCTCCCAGGGATCTGATGATGCTCAG 2037
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 AGGAGATGTAAGAAACGAACAATCTCAGGAATGCAGCGCAAGAGGCTTGGACAAAATTAG 2097
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GTAGTAGTAAAACATATATGCGTGTGTGTTGTTAGCTGTAAATATTACTTCATGGAGAAA 2157
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 ATTAGGAAAGTACCAGCCTGGAAAATCTGCGAGTTATAAAATAGGATTGCATGTGAGAAT 2217
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 GACATGTGGGGTCCTCACATGTGATTGTATTTTTCAACTTCGTGAATTCAGCTATGGTTC 2277
consensus_7056#1 ------------------------------------------------------------
consensus_7056#0 AAATTAAAATTGGCCTGTATGGATGAG 2304
consensus_7056#1 ---------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||