cluster # 7059

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Oryza sativa
cluster # 7059 cluster # 7059 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7059#0 length = 984 sequences # 3

consensus_7059#1 length = 233 sequences # 1

consensusID : consensus_7059#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 984
fasta sequence

                              [GTCGATCGATCGATCGGAGTGAGCCGGTGAAACGGGAGAAGAACACGAGATGAGCCGGAGGAGCGGCGTGGCGACGAGCCGCCGGACCAGGCGGGCCGCCGAGCAGGAGGTGCAGCCGCCGCCGCTGTTTGCCGCGAACCCGATCTTCCTGTGCGAGGACGACGGCTCGGCGGGGCGGCTGATCAAACCGGGCGGCGGCGTACGCGGCTACGGGCCGGGCTCGCTGCACGCGCTCGTGCGAGGCCGCGGCCGCGGCCGCGACGTGGCGGCGGACGACGACGACGACGACGGTGGCAACAAGATGCTGCCGTTGCCGCTGCCACCGTGCAGGGCCCACCGCGAGGGGCGTGGTGGGACCCGGGTTCCCACGGCGTGGCACGTTGGGCCCACGATCGTGGTGGGCCCGCATGGCGCGGTGGTGAGGATCCGTGCGCCGCCGCCGCCTCAGCAGCATGACCCGTTCCTGGCCGCCTACGTGGCGTGCACCAAGGGCCGCGCCGGCGCCGGCAACAAGAAGAAGAAGAAGAAAGCCAAGGCGGCCGCGCGCGGCGGGTGCGGCATGTGGAACGGGTGGGCGTCGGGCGCGAGGTACGCACGGGTGATGTCGTGCAGGCACGGCGGTGCCGTAACCGTGCTGCAGGGCGCCACTCCTCTTCCCGCCGTCGCCGGCTATGCCGAGTCGCCGGCGCACCCCACGCTGGACCTGTCCCGCCTGCCGGCGGTGCTGCCGGGGAGGAGACGGGTGCACAACTGAGGACAGATCGTGTACTCGTACGTGGCCGGTGCATGTGTACATTGATACTACTGCCATGACGTCGTGTGCAAAGAATTAAGAAAGTAGTAGTCCATATTTGCCCAAATATTGTCAGTCCAAAAATATAATGGGCCGTATCAGCCCTAAAAGTAAAATTTTAGCCCAAACAGTAGTATGGGCCGGGTCACAATTGTCAAAGCTTTACAACGCAATAAAATCTGGATGTCAAT]

[+] EMBL AK063169             [GTCGATCGATCGATCGGAGTGAGCCGGTGAAACGGGAGAAGAACACGAGATGAGCCGGAGGAGCGGCGTGGCGACGAGCCGCCGGACCAGGCGGGCCGCCGAGCAGGAGGTGCAGCCGCCGCCGCTGTTTGCCGCGAACCCGATCTTCCTGTGCGAGGACGACGGCTCGGCGGGGCGGCTGATCAAACCGGGCGGCGGCGTACGCGGCTACGGGCCGGGCTCGCTGCACGCGCTCGTGCGAGGCCGCGGCCGCGGCCGCGACGTGGCGGCGGACGACGACGACGACGACGGTGGCAACAAGATGCTGCCGTTGCCGCTGCCACCGTGCAGGGCCCACCGCGAGGGGCGTGGTGGGACCCGGGTTCCCACGGCGTGGCACGTTGGGCCCACGATCGTGGTGGGCCCGCATGGCGCGGTGGTGAGGATCCGTGCGCCGCCGCCGCCTCAGCAGCATGACCCGTTCCTGGCCGCCTACGTGGCGTGCACCAAGGGCCGCGCCGGCGCCGGCAACAAGAAGAAGAAGAAGAAAGCCAAGGCGGCCGCGCGCGGCGGGTGCGGCATGTGGAACGGGTGGGCGTCGGGCGCGAGGTACGCACGGGTGATGTCGTGCAGGCACGGCGGTGCCGTAACCGTGCTGCAGGGCGCCACTCCTCTTCCCGCCGTCGCCGGCTATGCCGAGTCGCCGGCGCACCCCACGCTGGACCTGTCCCGCCTGCCGGCGGTGCTGCCGGGGAGGAGACGGGTGCACAACTGAGGACAGATCGTGTACTCGTACGTGGCCGGTGCATGTGTACATTGATACTACTGCCATGACGTCGTGTGCAAAGAATTAAGAAAGTAGTAGTCCATATTTGCCCAAATATTGTCAGTCCAAAAATATAATGGGCCGTATCAGCCCTAAAAGTAAAATTTTAGCCCAAACAGTAGTATGGGCCGGGTCACAATTGTCAAAGCTTTACAACGCAATAAAATCTGGATGTCAAT]
[+] EMBL CA756487             [       GATCGATCGGAGTGAGCCGGTGAAACGGGAGAAGAACACGAGATGAGCCGGAGGAGCGGCGTGGCGACGAGCCGCCGGACCAGGCGGGCCGCCGAGCAGGAGGTGCAGCCGCCGCCGCTGTTTGCCGCGAACCCGATCTTCCTGTGCGAGGACGACGGCTCGGCGGGGCGGCTGATCAAACCGGGCGGCGGCGTACGCGGCTACGGGCCGGGCTCGCTGCACGCGCTCGTGCGAGGCCGCGGCCGCGGCCGCGACGTGGCGGCGGACGACGACGACGACGACGGTGGCAACAAGATGCTGCCGTTGCCGCTGCCACCGTGCAGGGCCCACCGCGAGGGGCGTGGTGGGACCCGGGTTCCCACGGCGTGGCACGTTGGGCCCACGATCGTGGTGGGCCCGCATGGCGCGGTGGTGAGGATCCGTGCGCCGCCGCCGCCTCAGCAGCATGACCCGTTCCTGGCCGCCTACGTGGCGTGCACCAAGGGCCGCGCCGGCGCCGGCTACAAGAAGAAGAAGAAGATAGCCAAGGCGGCCGCGCGCGGCGGGTGCGGCATGTGGAACGGGTGGGCGTCGGGCGCGAGGTACGCACGGGTG                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK062697             [       GATCGATCGGAGTGAGCCGGTGAAACGGGAGAAGAACACGAGATGAGCCGGAGGAGCGGCGTGGCGACGAGCCGCCGGACCAGGCGGGCCGCCGAGCAGGAGGTGCAGCCGCCGCCGCTGTTTGCCGCGAACCCGATCTTCCTGTGCGAGGACGACGGCTCGGCGGGGCGGCTGATCAAACCGGGCGGCGGCGTACGCGGCTACGGGCCGGGCTCGCTGCACGCGCTCGTGCGAGGCCGCGGCCGCGGCCGCGACGTGGCGGCGGACGACGACGACGACGACGGTGGCAACAAGATGCTGCCGTTGCCGCTGCCACCGTGCAGGGCCCACCGCGAGGGGCGTGGTGGGACCCGGGTTCCCACGGCGTGGCACGTTGGGCCCACGATCGTGGTGGGCCCGCATGGCGCGGTGGTGAGGATCCGTGCGCCGCCGCCGCCTCAGCAGCATGACCCGTTCCTGGCCGCCTACGTGGCGTGCACCAAGGGCCGCGCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_7059#0
GTCGATCGATCGATCGGAGTGAGCCGGTGAAACGGGAGAAGAACACGAGATGAGCCGGAG
GAGCGGCGTGGCGACGAGCCGCCGGACCAGGCGGGCCGCCGAGCAGGAGGTGCAGCCGCC
GCCGCTGTTTGCCGCGAACCCGATCTTCCTGTGCGAGGACGACGGCTCGGCGGGGCGGCT
GATCAAACCGGGCGGCGGCGTACGCGGCTACGGGCCGGGCTCGCTGCACGCGCTCGTGCG
AGGCCGCGGCCGCGGCCGCGACGTGGCGGCGGACGACGACGACGACGACGGTGGCAACAA
GATGCTGCCGTTGCCGCTGCCACCGTGCAGGGCCCACCGCGAGGGGCGTGGTGGGACCCG
GGTTCCCACGGCGTGGCACGTTGGGCCCACGATCGTGGTGGGCCCGCATGGCGCGGTGGT
GAGGATCCGTGCGCCGCCGCCGCCTCAGCAGCATGACCCGTTCCTGGCCGCCTACGTGGC
GTGCACCAAGGGCCGCGCCGGCGCCGGCAACAAGAAGAAGAAGAAGAAAGCCAAGGCGGC
CGCGCGCGGCGGGTGCGGCATGTGGAACGGGTGGGCGTCGGGCGCGAGGTACGCACGGGT
GATGTCGTGCAGGCACGGCGGTGCCGTAACCGTGCTGCAGGGCGCCACTCCTCTTCCCGC
CGTCGCCGGCTATGCCGAGTCGCCGGCGCACCCCACGCTGGACCTGTCCCGCCTGCCGGC
GGTGCTGCCGGGGAGGAGACGGGTGCACAACTGAGGACAGATCGTGTACTCGTACGTGGC
CGGTGCATGTGTACATTGATACTACTGCCATGACGTCGTGTGCAAAGAATTAAGAAAGTA
GTAGTCCATATTTGCCCAAATATTGTCAGTCCAAAAATATAATGGGCCGTATCAGCCCTA
AAAGTAAAATTTTAGCCCAAACAGTAGTATGGGCCGGGTCACAATTGTCAAAGCTTTACA
ACGCAATAAAATCTGGATGTCAAT

consensusID : consensus_7059#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 233
fasta sequence

                              [AGGAGACAGGGTGCACAACTGAGGACAGATCGTGTACTCGTACGTGGCCGGTGCATGTGTACATTGATACTANTGCCATGACGTCGTGTGCAAAGAATTAAGAAAGTAGTAGTCCATATTTGCCCAAATATTGTCAGTCCAAAAATATAATGGGCCGTATCAGCCCTAAAAGTAAAATTTTAGCCCAAACAGTAGTATGGGCCGGGTCAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU070434             [AGGAGACAGGGTGCACAACTGAGGACAGATCGTGTACTCGTACGTGGCCGGTGCATGTGTACATTGATACTANTGCCATGACGTCGTGTGCAAAGAATTAAGAAAGTAGTAGTCCATATTTGCCCAAATATTGTCAGTCCAAAAATATAATGGGCCGTATCAGCCCTAAAAGTAAAATTTTAGCCCAAACAGTAGTATGGGCCGGGTCAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7059#1
AGGAGACAGGGTGCACAACTGAGGACAGATCGTGTACTCGTACGTGGCCGGTGCATGTGT
ACATTGATACTANTGCCATGACGTCGTGTGCAAAGAATTAAGAAAGTAGTAGTCCATATT
TGCCCAAATATTGTCAGTCCAAAAATATAATGGGCCGTATCAGCCCTAAAAGTAAAATTT
TAGCCCAAACAGTAGTATGGGCCGGGTCAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7059#0      GTCGATCGATCGATCGGAGTGAGCCGGTGAAACGGGAGAAGAACACGAGATGAGCCGGAG 60
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      GAGCGGCGTGGCGACGAGCCGCCGGACCAGGCGGGCCGCCGAGCAGGAGGTGCAGCCGCC 120
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      GCCGCTGTTTGCCGCGAACCCGATCTTCCTGTGCGAGGACGACGGCTCGGCGGGGCGGCT 180
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      GATCAAACCGGGCGGCGGCGTACGCGGCTACGGGCCGGGCTCGCTGCACGCGCTCGTGCG 240
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      AGGCCGCGGCCGCGGCCGCGACGTGGCGGCGGACGACGACGACGACGACGGTGGCAACAA 300
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      GATGCTGCCGTTGCCGCTGCCACCGTGCAGGGCCCACCGCGAGGGGCGTGGTGGGACCCG 360
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      GGTTCCCACGGCGTGGCACGTTGGGCCCACGATCGTGGTGGGCCCGCATGGCGCGGTGGT 420
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      GAGGATCCGTGCGCCGCCGCCGCCTCAGCAGCATGACCCGTTCCTGGCCGCCTACGTGGC 480
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      GTGCACCAAGGGCCGCGCCGGCGCCGGCAACAAGAAGAAGAAGAAGAAAGCCAAGGCGGC 540
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      CGCGCGCGGCGGGTGCGGCATGTGGAACGGGTGGGCGTCGGGCGCGAGGTACGCACGGGT 600
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      GATGTCGTGCAGGCACGGCGGTGCCGTAACCGTGCTGCAGGGCGCCACTCCTCTTCCCGC 660
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      CGTCGCCGGCTATGCCGAGTCGCCGGCGCACCCCACGCTGGACCTGTCCCGCCTGCCGGC 720
consensus_7059#1      ------------------------------------------------------------
                                                                                  

consensus_7059#0      GGTGCTGCCGGGGAGGAGAC-GGGTGCACAACTGAGGACAGATCGTGTACTCGTACGTGG 779
consensus_7059#1      -------------AGGAGACAGGGTGCACAACTGAGGACAGATCGTGTACTCGTACGTGG 47
                                   ******* ***************************************

consensus_7059#0      CCGGTGCATGTGTACATTGATACTACTGCCATGACGTCGTGTGCAAAGAATTAAGAAAGT 839
consensus_7059#1      CCGGTGCATGTGTACATTGATACTANTGCCATGACGTCGTGTGCAAAGAATTAAGAAAGT 107
                      ************************* **********************************

consensus_7059#0      AGTAGTCCATATTTGCCCAAATATTGTCAGTCCAAAAATATAATGGGCCGTATCAGCCCT 899
consensus_7059#1      AGTAGTCCATATTTGCCCAAATATTGTCAGTCCAAAAATATAATGGGCCGTATCAGCCCT 167
                      ************************************************************

consensus_7059#0      AAAAGTAAAATTTTAGCCCAAACAGTAGTATGGGCCGGGTCACAATTGTCAAAGCTTTAC 959
consensus_7059#1      AAAAGTAAAATTTTAGCCCAAACAGTAGTATGGGCCGGGTCAAAAAAAAAAAAA------ 221
                      ****************************************** **     ***       

consensus_7059#0      AACGCAATAAAATCTGGATGTCAAT 984
consensus_7059#1      AAAAAAAAAAAA------------- 233
                      **   ** ****