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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2071 fasta sequence
[GACAGGCATAGGCATCTGGCATACTTATAATATTAATCTTTTGTCCTGAGCAGGTTATGGTCCTGGACCTTCCTCTTGATATCCAAGCCGTTTCAGCGAACAAATTTGTTGACAAAGTATTAACCTTTAAGCCAAGGCTTATTATAATAGTTTCGCCCGCAGATATTGAAAGATTGGATTGCAAGGAGGAGCCCTATCATTTGATATGGGAATATAATCAGCACATCTTTGGGAAGCCATGGTATCAACCTGGTGATGTGGATGTGAATGACGACGCAAAGAATGGTTTGCATGTAATTCCTCTCTGTGTTTCCTTGTGGAGTTTCCCTGACCAGACATAGGATAATATGAGGATAGCTGGAAAACATGGCCATTTAAATGTTGGGCACAACGCACATAGTGTCATGTCGAATGATTCTTCTGTGGACAAAGGTGCTAAGGGGGATAACGAGATCTTCACAGTTGGAAAAGAAGACACTAGCGAGAGAGAACAAACATCTGAGCACTGTTCAGGAGAACGATTGATAATTCCCAATGTAGTTACTTTTCATGCAAATCAAGAGCAGAATGATGAGCTACAAAGCTTGTATAAGGAGAAACATGCTAATGGAAGTGGAGGCGGAAATAACTTGACATCAGGAAAAGAGAGTGATGTGCATCGGGGAGAGAATGCATGTGGGCATAACTCTGCAGCACGTCAAAAGACAGAGATCTCGAAGAGAGAAAACAGAATGACGGATAGTACACATGAAGAGAACATGAGATCAGGAAAAGAGAAGATTCCCAGGGATGGCAGCAACAAGGGGACAGTGAAGCCAGATCTTGTTGATGGACTACCTCCAGATAAGCATGTAGATGTTGCATTTGTGCACAAGACAACTACCAACAGAGTAGATACTCAGCAAGAATGTGGATACAATGTGGCTGTAGATGTTGATGACAATTATGCTCTTCAACATGAGCCAAAGAGTCCTCACGGCAATGATAATCTCAGAGGAACTGAAATGGATACTTCAGGTGACAATTCAAGAAAAACCAGGGAACAAAAGGAGGTGACTGATGGTAAGAGATTGGACTTGGATAGGAAAAGAGAAGCCGTTCGCATGAAAAACGCGCGAGATGGTCATCATGAAGATGATAGAACTGCTCATCCTCAATGTGTTGACGTCAAAAGTCCTTCGCATAATGATGATCAAAGAGCACGAGGGGCTTCAGTATGCAAGTCCAGAAAGAGGGGGACATCAAATAGAATACTAGAGTCAAGGGATACCGTGAGCGAAAATTCAGCTAGACGCCAGGTACCAGTGGAAAGAAGAAATGGTCATGCTCCATATTCAAGAAGGCCTGATTATAGTGCTACTGCAAGGCGTGGGTCCCCTTCTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAGTTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGTATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTGATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTGAGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATTACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAGATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTACAAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGTAGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTAAAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGATCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTACATTCTTAACTACCAATTTAGCCCTACTTTTCATACTTTACTTATTTGAA]
[+] EMBL CB637253 [GACAGGCATAGGCATCTGGCATACTTATAATATTAATCTTTTGTCCTGAGCAGGTTATGGTCCTGGACCTTCCTCTTGATATCCAAGCCGTTTCAGCGAACAAATTTGTTGACAAAGTATTAACCTTTAAGCCAAGGCTTATTATAATAGTTTCGCCCGCAGATATTGAAAGATTGGATTGCAAGGAGGAGCCCTATCATTTGATATGGGAATATAATCAGCACATCTTTGGGAAGCCATGGTATCAACCTGGTGATGTGGATGTGAATGACGACGCAAAGAATGGTTTGCATGTAATTCCTCTCTGTGTTTCCTTGTGGAGTTTCCCTGACCAGACATAGGATAATATGAGGATAGCTGGAAAACATGGCCATTTAAATGTTGGGCACAACGCACATAGTGTCATGTCGAATGATTC ]
[+] EMBL AK064536 [ GAATATAATCAGCACATCTTTGGGAAGCCATTGTATCAACCTGGTGATGTGGATGTGAATGACGACGCAAAGAATGGTTTGCATGTAATTCCTCTCTGTGTTTCCTTGTGGAGTTTCCCTGACAAGACAGAGGAGAATATGAGGATAGCTGGAAAACATGGCCATTTAAATGTTGGGCACAAGGCACATAGTGTCATGTTGAAGGATTCTTCTGTGGACAAAGGTGCTAAGGGGGATAACGAGATCTTCACAGTTGGAAAAGAAGACACTAGCGAGAGAGAACAAACATCTGAGCACTGTTCAGGAGAACGATTGATAATTCCCAATGTAGTTACTTTTCATGCAAATCAAGAGCAGAATGATGAGCTACAAAGCTTGTATAAGGAGAAACATGCTAATGGAAGTGGAGGCGGAAATAACTTGACATCAGGAAAAGAGAGTGATGTGCATCGGGGAGAGAATGCATGTGGGCATAACTCTGCAGCACGTCAAAAGACAGAGATCTCGAAGAGAGAAAACAGAATGACGGATAGTACACATGAAGAGAACATGAGATCAGGAAAAGAGAAGATTCCCAGGGATGGCAGCAACAAGGGGACAGTGAAGCCAGATCTTGTTGATGGACTACCTCCAGATAAGCATGTAGATGTTGCATTTGTGCACAAGACAACTACCAACAGAGTAGATACTCAGCAAGAATGTGGATACAATGTGGCTGTAGATGTTGATGACAATTATGCTCTTCAACATGAGCCAAAGAGTCCTCACGGCAATGATAATCTCAGAGGAACTGAAATGGATACTTCAGGTGACAATTCAAGAAAAACCAGGGAACAAAAGGAGGTGACTGATGGTAAGAGATTGGACTTGGATAGGAAAAGAGAAGCCGTTCGCATGAAAAACGCGCGAGATGGTCATCATGAAGATGATAGAACTGCTCATCCTCAATGTGTTGACGTCAAAAGTCCTTCGCATAATGATGATCAAAGAGCACGAGGGGCTTCAGTATGCAAGTCCAGAAAGAGGGGGACATCAAATAGAATACTAGAGTCAAGGGATACCGTGAGCGAAAATTCAGCTAGACGCCAGGTACCAGTGGAAAGAAGAAATGGTCATGCTCCATATTCAAGAAGGCCTGATTATAGTGCTACTGCAAGGCGTGGGTCCCCTTCTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAGTTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGTATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTGATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTGAGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATTACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAGATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTACAAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGTAGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTAAAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGATCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTACATTCTTAACTACCAATTTAGCCCTACTTTTCATACTTTACTTATTTGAA]
consensusID : consensus_7064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence
[CTACTGCAAGGCGTGGGTCCCCTTCTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAGTTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGTATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTGATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTGAGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATTACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAGATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTACAAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGTAGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTGAAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGATCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTNCAAAAAAAAAAAA]
[-] EMBL CA761784 [CTACTGCAAGGCGTGGGTCCCCTTCTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAGTTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGTATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTGATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTGAGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATTACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAGATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTACAAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGTAGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTGAAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGATCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTNCAAAAAAAAAAAA]
[-] EMBL CA761661 [CTACTGCAAGGCGTGGGTCCCCTTCTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAGTTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGTATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTGATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTGAGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATTACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAGATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTACAAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGTAGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTGAAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGATCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTNCAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7064#0 GACAGGCATAGGCATCTGGCATACTTATAATATTAATCTTTTGTCCTGAGCAGGTTATGG 60
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 TCCTGGACCTTCCTCTTGATATCCAAGCCGTTTCAGCGAACAAATTTGTTGACAAAGTAT 120
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 TAACCTTTAAGCCAAGGCTTATTATAATAGTTTCGCCCGCAGATATTGAAAGATTGGATT 180
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 GCAAGGAGGAGCCCTATCATTTGATATGGGAATATAATCAGCACATCTTTGGGAAGCCAT 240
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 GGTATCAACCTGGTGATGTGGATGTGAATGACGACGCAAAGAATGGTTTGCATGTAATTC 300
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 CTCTCTGTGTTTCCTTGTGGAGTTTCCCTGACCAGACATAGGATAATATGAGGATAGCTG 360
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 GAAAACATGGCCATTTAAATGTTGGGCACAACGCACATAGTGTCATGTCGAATGATTCTT 420
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 CTGTGGACAAAGGTGCTAAGGGGGATAACGAGATCTTCACAGTTGGAAAAGAAGACACTA 480
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 GCGAGAGAGAACAAACATCTGAGCACTGTTCAGGAGAACGATTGATAATTCCCAATGTAG 540
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 TTACTTTTCATGCAAATCAAGAGCAGAATGATGAGCTACAAAGCTTGTATAAGGAGAAAC 600
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 ATGCTAATGGAAGTGGAGGCGGAAATAACTTGACATCAGGAAAAGAGAGTGATGTGCATC 660
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 GGGGAGAGAATGCATGTGGGCATAACTCTGCAGCACGTCAAAAGACAGAGATCTCGAAGA 720
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 GAGAAAACAGAATGACGGATAGTACACATGAAGAGAACATGAGATCAGGAAAAGAGAAGA 780
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 TTCCCAGGGATGGCAGCAACAAGGGGACAGTGAAGCCAGATCTTGTTGATGGACTACCTC 840
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 CAGATAAGCATGTAGATGTTGCATTTGTGCACAAGACAACTACCAACAGAGTAGATACTC 900
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 AGCAAGAATGTGGATACAATGTGGCTGTAGATGTTGATGACAATTATGCTCTTCAACATG 960
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 AGCCAAAGAGTCCTCACGGCAATGATAATCTCAGAGGAACTGAAATGGATACTTCAGGTG 1020
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 ACAATTCAAGAAAAACCAGGGAACAAAAGGAGGTGACTGATGGTAAGAGATTGGACTTGG 1080
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 ATAGGAAAAGAGAAGCCGTTCGCATGAAAAACGCGCGAGATGGTCATCATGAAGATGATA 1140
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 GAACTGCTCATCCTCAATGTGTTGACGTCAAAAGTCCTTCGCATAATGATGATCAAAGAG 1200
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 CACGAGGGGCTTCAGTATGCAAGTCCAGAAAGAGGGGGACATCAAATAGAATACTAGAGT 1260
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 CAAGGGATACCGTGAGCGAAAATTCAGCTAGACGCCAGGTACCAGTGGAAAGAAGAAATG 1320
consensus_7064#1 ------------------------------------------------------------
consensus_7064#0 GTCATGCTCCATATTCAAGAAGGCCTGATTATAGTGCTACTGCAAGGCGTGGGTCCCCTT 1380
consensus_7064#1 ------------------------------------CTACTGCAAGGCGTGGGTCCCCTT 24
************************
consensus_7064#0 CTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAG 1440
consensus_7064#1 CTTATCCAAGAAGACGTAGAAGATCAAGGCATTTCAGCTCTGAAAGAGACTGGAGCACAG 84
************************************************************
consensus_7064#0 TTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGT 1500
consensus_7064#1 TTCCTCCTCGTGGTAATTCACCCGATACCGAGTACGATGGTACTAGATACAATACCGAGT 144
************************************************************
consensus_7064#0 ATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTG 1560
consensus_7064#1 ATGATGGATATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTG 204
************************************************************
consensus_7064#0 ATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTG 1620
consensus_7064#1 ATAGATATTATCCTCAGGAGCACCACAATGGTGCATATCGACCTCAGACAAATTTTGGTG 264
************************************************************
consensus_7064#0 AGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATT 1680
consensus_7064#1 AGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGATGGGGACCAGATT 324
************************************************************
consensus_7064#0 ACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAG 1740
consensus_7064#1 ACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAG 384
************************************************************
consensus_7064#0 ATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTAC 1800
consensus_7064#1 ATAGGTATGTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTAC 444
************************************************************
consensus_7064#0 AAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGT 1860
consensus_7064#1 AAGATGGCTACTTCATGCGTAGAAGCAGGTCTTTTGTGAATATGCATGTGCCCTACTAGT 504
************************************************************
consensus_7064#0 AGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTA 1920
consensus_7064#1 AGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCAACGGAAAGCCTG 564
***********************************************************
consensus_7064#0 AAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGA 1980
consensus_7064#1 AAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGA 624
************************************************************
consensus_7064#0 TCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTACATTCTTAACTACCAATTT 2040
consensus_7064#1 TCAAGAGCATCTCAGTGACTGAACTGCAGTCCCATTTTGTNCAAAAAAAAAAAA------ 678
**************************************** ** ** *
consensus_7064#0 AGCCCTACTTTTCATACTTTACTTATTTGAA 2071
consensus_7064#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||