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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7065#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2309 fasta sequence
[TGGCCCCCCCTCCGCGGCCTCCGCTCACCTCTCCTCCTCCTCGCGATTTCCACCCGCACCGCCGCCTGCGCCGATCTCTCCATTCCCGCGACCACCGCCGCCCGCCGCCCGCCGCATCTGGCCACCACCTATGCCCCCCGTCAGGTCCGCCCCCGGGAGGCGGGCGCCGGAATTCCGGCGCTCGTCGGCGGCGGCTGCCGGAGTGGATCTGGTGGCTCGTCGGGATCTTCCTCGTCCTCGGCCTCATGCTCTTCGTCCTGCACCACAACCAGAGGGAGCATTTCCGCCCGCCCGTAGTCGATAAGGGTTCAGAATTTGAGGAAACCCATCATGAGAAAGTAAATTTCACAGAAGAGCTTTTAAGCAGTACATCATTTGCACGCCAATTGACAGATCAAATGACTCTAGCAAAGGCTTATGTTGTCCTTGCAAAAGAGCATGGCAACCTTCAGCTTGCATGGGAGCTTAGTTCACAGATAAGGAATTGTCAAAGATTGCTATCTGAAGAAGCTGTTAGTGGGAAGGCCATCACTAAAGAAGAAGCCCATCCAATAATAACTCGGCTTGCACGGTTAATATACAAAGCACAGGACTCTCATTATGATATCAGCACAACAATTGTAACACTGAAGAGCCTTGTCAATGCACTTGAGGAGCGTGCAAAGGCAGCAGTTGTTCAGACTGCTGAGTTTGGTCAGTTAGCTGCAGAGTCCGTCCCCAAGAATTTGCACTGTTTAACTGTTAAACTGACGGTAGAGTGGCTTCAGAACCCAAAACATAGGGGTCGCTCAGAAGAACATCGGAACTCCACACGATTGGTAGACAATAATCTGTACCATTTTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAAATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGGCTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCATAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGATGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAGTTCCATAATCCCAAGTTTGTTTCTCTGTTGAACCATTTGCGGTTCTACATTCCTCAAATACTACCTAATTTGGAGAAGGTGGTTTTTCTCGATGATGATGTTGTGGTACAGAAGGACTTGACACAGCTATTTTCGATAGAGTTGCACGGTAATGTTATTGGAGCAGTGGAGACTTGTTTAGAGTCATTTCATCGGTATCACAAGTATCTTAATTTCTCCCACCCAATTATCAGCTCCAAAATTGATCCGCATACTTGTGGGTGGGCTTTTGGGATGAACATCTTTGACTTAATAGCCTGGAGGAAGGCAAATGCCACAGCACTTTATCATTATTGGCAAGAGCAAAATGCTGATCTATTGCTCTGGAGGACAGGGACACTTCCTGCAGGCCTTTTGACGTTCTATGGCCTGATGGAACCCCTAGATCGCAGATGGCATGTCTTGGGGCTAGGATATGATGTTGACATAGATGATCGTTTGATTGAGAGTGCCGCTGTCGTGCACTACAATGGGAATATGAAACCATGGCTGAAGTTAGCCATTCGTCGGTACAAGTATATATGGGAGCGGTATGTCAATTTCACACACCCATATGTTAGAGAGTGTTTGTTGCATTAGAAAGTCTGCAATCACTGTTCACCATGAATGTGTCATGCCATTGAAGCTAGGCGCTTCGGTTTCTTACATGGAGTTGCTTTTTGGCACCTTGTTTAAGAAATCCTTCGGAGAGGTAGATTATATACTCAAGAGACAGCATCAAAGAAGCCAACTGTTAAAATTTCTTTTTGGGTGGGGGACTTGGGGGAGATTCATTTTGAGATGAAAATAATTCCTTTGCAGATTTTTACATACAATTTGGACTGGAAATTTTAGCAGTCTAACCAGATCATCTGGATAGATATTGTAAAAGAGATATAGGTGTTGGATCGATGGGGTCAATTTTTGAGATGTAGGAAATGCCAATTGCCGATTCAGCTGTTCAGAGTTGCTGGTGTTACATTCTTTCCAGAACATTGTGTTTTATACTGGTGAAGAAGCTTCTCCTTTTCTCTTTGTATAAACAGCTCTGTATTCTTCATACAGTATGAACTCAGCTCATTTGATAAAAGGAAATCAAAATCATTTTGATGTGCTAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATCG]
[+] EMBL AK100228 [TGGCCCCCCCTCCGCGGCCTCCGCTCACCTCTCCTCCTCCTCGCGATTTCCACCCGCACCGCCGCCTGCGCCGATCTCTCCATTCCCGCGACCACCGCCGCCCGCCGCCCGCCGCATCTGGCCACCACCTATGCCCCCCGTCAGGTCCGCCCCCGGGAGGCGGGCGCCGGAATTCCGGCGCTCGTCGGCGGCGGCTGCCGGAGTGGATCTGGTGGCTCGTCGGGATCTTCCTCGTCCTCGGCCTCATGCTCTTCGTCCTGCACCACAACCAGAGGGAGCATTTCCGCCCGCCCGTAGTCGATAAGGGTTCAGAATTTGAGGAAACCCATCATGAGAAAGTAAATTTCACAGAAGAGCTTTTAAGCAGTACATCATTTGCACGCCAATTGACAGATCAAATGACTCTAGCAAAGGCTTATGTTGTCCTTGCAAAAGAGCATGGCAACCTTCAGCTTGCATGGGAGCTTAGTTCACAGATAAGGAATTGTCAAAGATTGCTATCTGAAGAAGCTGTTAGTGGGAAGGCCATCACTAAAGAAGAAGCCCATCCAATAATAACTCGGCTTGCACGGTTAATATACAAAGCACAGGACTCTCATTATGATATCAGCACAACAATTGTAACACTGAAGAGCCTTGTCAATGCACTTGAGGAGCGTGCAAAGGCAGCAGTTGTTCAGACTGCTGAGTTTGGTCAGTTAGCTGCAGAGTCCGTCCCCAAGAATTTGCACTGTTTAACTGTTAAACTGACGGTAGAGTGGCTTCAGAACCCAAAACATAGGGGTCGCTCAGAAGAACATCGGAACTCCACACGATTGGTAGACAATAATCTGTACCATTTTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAAATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGGCTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCATAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGATGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAGTTCCATAATCCCAAGTTTGTTTCTCTGTTGAACCATTTGCGGTTCTACATTCCTCAAATACTACCTAATTTGGAGAAGGTGGTTTTTCTCGATGATGATGTTGTGGTACAGAAGGACTTGACACAGCTATTTTCGATAGAGTTGCACGGTAATGTTATTGGAGCAGTGGAGACTTGTTTAGAGTCATTTCATCGGTATCACAAGTATCTTAATTTCTCCCACCCAATTATCAGCTCCAAAATTGATCCGCATACTTGTGGGTGGGCTTTTGGGATGAACATCTTTGACTTAATAGCCTGGAGGAAGGCAAATGCCACAGCACTTTATCATTATTGGCAAGAGCAAAATGCTGATCTATTGCTCTGGAGGACAGGGACACTTCCTGCAGGCCTTTTGACGTTCTATGGCCTGATGGAACCCCTAGATCGCAGATGGCATGTCTTGGGGCTAGGATATGATGTTGACATAGATGATCGTTTGATTGAGAGTGCCGCTGTCGTGCACTACAATGGGAATATGAAACCATGGCTGAAGTTAGCCATTCGTCGGTACAAGTATATATGGGAGCGGTATGTCAATTTCACACACCCATATGTTAGAGAGTGTTTGTTGCATTAGAAAGTCTGCAATCACTGTTCACCATGAATGTGTCATGCCATTGAAGCTAGGCGCTTCGGTTTCTTACATGGAGTTGCTTTTTGGCACCTTGTTTAAGAAATCCTTCGGAGAGGTAGATTATATACTCAAGAGACAGCATCAAAGAAGCCAACTGTTAAAATTTCTTTTTGGGTGGGGGACTTGGGGGAGATTCATTTTGAGATGAAAATAATTCCTTTGCAGATTTTTACATACAATTTGGACTGGAAATTTTAGCAGTCTAACCAGATCATCTGGATAGATATTGTAAAAGAGATATAGGTGTTGGATCGATGGGGTCAATTTTTGAGATGTAGGAAATGCCAATTGCCGATTCAGCTGTTCAGAGTTGCTGGTGTTACATTCTTTCCAGAACATTGTGTTTTATACTGGTGAAGAAGCTTCTCCTTTTCTCTTTGTATAAACAGCTCTGTATTCTTCATACAGTATGAACTCAGCTCATTTGATAAAAGGAAATCAAAATCATTT ]
[+] EMBL OSS0093A [ cgagCACAACCAGAGGGAGCATTTCCGCCCGCCCGTAGTCGATAAGGGTTCAGAATTTGAGGAAACCCATCATGAGAAAGTAAATTTCACAGAAGAGCTTTTAAGCAGTACATCATTTGCACGCCAATTGACAGATCAAATGACTCTAGCAAAGGCTTATGTTGTCCTTGCAAAAGAGCATGGCAACCTTCAGCTTGCATGGGAGCTTAGTTCACAGATAAGGAATTGTCAAAGATTGCTATCTGAAGAAGCTGTTAGTGGGAAGGCCATCACTAAAGAAGAAGCCCATCCAATAATAACTCGGCTTGCACGGTTAATATACAAAGCACAGGGCTCTCATTATGGTATCAGCACAACAt ]
[-] EMBL CF307754 [ TGCATTAGAAAGTCTGCAATCACTGTTCACCATGAATGTGTCATGCCATTGAAGCTAGGCGCTTCGGTTTCTTACATGGAGTTGCTTTTTGGCACCTTGTTTAAGAAATCCTTCGGAGAGGTAGATTATATACTCAAGAGACAGCATCAAAGAAGCCAACTGTTAAAATTTCTTTTTGGGTGGGGGACTTGGGGGAGATTCATTTTGAGATGAAAATAATTCCTTTGCAGATTTTTACATACAATTTGGACTGGAAATTTTAGCAGTCTAACCAGATCATCTGGATAGATATTGTAAAAGAGATATAGGTGTTGGATCGATGGGGTCAATTTTTGAGATGTAGGAAATGCCAATTGCCGATTCAGCTGTTCAANGATGATGGTGTTACATTCTTTCCAGAACATTGTGTTTTATACTGGTGAAGAAGCTTCTCCTTTTCTCTTTGTATAAACAGCTCTGTATTCTTCATACAGTATGAACTCAGCTCATTTGATAAAAGGAAATCGAAATCATTTTGATGTGCTAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATCG]
consensusID : consensus_7065#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence
[CATGGATGAGGAGTAGAAAAGACAATAATCTGTACCATTTTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAAATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGGCTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCATAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGATGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAG]
[+] EMBL CF307753 [CATGGATGAGGAGTAGAAAAGACAATAATCTGTACCATTTTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAAATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGGCTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCATAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGATGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7065#0 TGGCCCCCCCTCCGCGGCCTCCGCTCACCTCTCCTCCTCCTCGCGATTTCCACCCGCACC 60
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 GCCGCCTGCGCCGATCTCTCCATTCCCGCGACCACCGCCGCCCGCCGCCCGCCGCATCTG 120
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 GCCACCACCTATGCCCCCCGTCAGGTCCGCCCCCGGGAGGCGGGCGCCGGAATTCCGGCG 180
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 CTCGTCGGCGGCGGCTGCCGGAGTGGATCTGGTGGCTCGTCGGGATCTTCCTCGTCCTCG 240
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 GCCTCATGCTCTTCGTCCTGCACCACAACCAGAGGGAGCATTTCCGCCCGCCCGTAGTCG 300
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 ATAAGGGTTCAGAATTTGAGGAAACCCATCATGAGAAAGTAAATTTCACAGAAGAGCTTT 360
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 TAAGCAGTACATCATTTGCACGCCAATTGACAGATCAAATGACTCTAGCAAAGGCTTATG 420
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 TTGTCCTTGCAAAAGAGCATGGCAACCTTCAGCTTGCATGGGAGCTTAGTTCACAGATAA 480
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 GGAATTGTCAAAGATTGCTATCTGAAGAAGCTGTTAGTGGGAAGGCCATCACTAAAGAAG 540
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 AAGCCCATCCAATAATAACTCGGCTTGCACGGTTAATATACAAAGCACAGGACTCTCATT 600
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 ATGATATCAGCACAACAATTGTAACACTGAAGAGCCTTGTCAATGCACTTGAGGAGCGTG 660
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 CAAAGGCAGCAGTTGTTCAGACTGCTGAGTTTGGTCAGTTAGCTGCAGAGTCCGTCCCCA 720
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 AGAATTTGCACTGTTTAACTGTTAAACTGACGGTAGAGTGGCTTCAGAACCCAAAACATA 780
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 GGGGTCGCTCAGAAGAACATCGGAACTCCACACGATTGGTAGACAATAATCTGTACCATT 840
consensus_7065#1 -----------------CATGGATG----AGGAGTAGAAAAGACAATAATCTGTACCATT 39
*** * * * ********************
consensus_7065#0 TTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAA 900
consensus_7065#1 TTGCCATATTCTCTGATAATGTTCTTGCCACATCAGTTGTTGTCAATTCTACAGTCTCAA 99
************************************************************
consensus_7065#0 ATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGG 960
consensus_7065#1 ATGCAAACCACCCTCAACAGCTTGTATTTCATGTGGTCACAGACAGGGTCCACTTTGGGG 159
************************************************************
consensus_7065#0 CTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCA 1020
consensus_7065#1 CTATGTCAACTTGGTTCCTCATAAATGACTTCAAAGGGTGCACTGTTGAAGTCCGCTGCA 219
************************************************************
consensus_7065#0 TAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGA 1080
consensus_7065#1 TAGATGAGTTCACATGGTTGAATGCTGCTGCTTCTCCTCTGGTTAGGCAGCTATCTGAGA 279
************************************************************
consensus_7065#0 TGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAGTTCC 1140
consensus_7065#1 TGGAAACTCAGGGTTTCTACTATGGTGATTCTAAAAATCTTGAAAGAGAAATAAAG---- 335
********************************************************
consensus_7065#0 ATAATCCCAAGTTTGTTTCTCTGTTGAACCATTTGCGGTTCTACATTCCTCAAATACTAC 1200
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 CTAATTTGGAGAAGGTGGTTTTTCTCGATGATGATGTTGTGGTACAGAAGGACTTGACAC 1260
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 AGCTATTTTCGATAGAGTTGCACGGTAATGTTATTGGAGCAGTGGAGACTTGTTTAGAGT 1320
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 CATTTCATCGGTATCACAAGTATCTTAATTTCTCCCACCCAATTATCAGCTCCAAAATTG 1380
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 ATCCGCATACTTGTGGGTGGGCTTTTGGGATGAACATCTTTGACTTAATAGCCTGGAGGA 1440
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 AGGCAAATGCCACAGCACTTTATCATTATTGGCAAGAGCAAAATGCTGATCTATTGCTCT 1500
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 GGAGGACAGGGACACTTCCTGCAGGCCTTTTGACGTTCTATGGCCTGATGGAACCCCTAG 1560
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 ATCGCAGATGGCATGTCTTGGGGCTAGGATATGATGTTGACATAGATGATCGTTTGATTG 1620
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 AGAGTGCCGCTGTCGTGCACTACAATGGGAATATGAAACCATGGCTGAAGTTAGCCATTC 1680
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 GTCGGTACAAGTATATATGGGAGCGGTATGTCAATTTCACACACCCATATGTTAGAGAGT 1740
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 GTTTGTTGCATTAGAAAGTCTGCAATCACTGTTCACCATGAATGTGTCATGCCATTGAAG 1800
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 CTAGGCGCTTCGGTTTCTTACATGGAGTTGCTTTTTGGCACCTTGTTTAAGAAATCCTTC 1860
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 GGAGAGGTAGATTATATACTCAAGAGACAGCATCAAAGAAGCCAACTGTTAAAATTTCTT 1920
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 TTTGGGTGGGGGACTTGGGGGAGATTCATTTTGAGATGAAAATAATTCCTTTGCAGATTT 1980
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 TTACATACAATTTGGACTGGAAATTTTAGCAGTCTAACCAGATCATCTGGATAGATATTG 2040
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 TAAAAGAGATATAGGTGTTGGATCGATGGGGTCAATTTTTGAGATGTAGGAAATGCCAAT 2100
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 TGCCGATTCAGCTGTTCAGAGTTGCTGGTGTTACATTCTTTCCAGAACATTGTGTTTTAT 2160
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 ACTGGTGAAGAAGCTTCTCCTTTTCTCTTTGTATAAACAGCTCTGTATTCTTCATACAGT 2220
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 ATGAACTCAGCTCATTTGATAAAAGGAAATCAAAATCATTTTGATGTGCTAAAAAAAAAA 2280
consensus_7065#1 ------------------------------------------------------------
consensus_7065#0 AAAAAAAAAACACTGTCATGCCGTTATCG 2309
consensus_7065#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||