cluster # 7070

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Oryza sativa
cluster # 7070 cluster # 7070 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7070#0 length = 247 sequences # 3

consensus_7070#1 length = 188 sequences # 1

consensusID : consensus_7070#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 247
fasta sequence

                              [GGCTCGAGGAGGCCATCGCCGACGAGCTCCTCCGCTNGCTGCCNCCNCCGCCGCCGGCCTAGACCGTCATCTCTGCATATTAATCCTGCTTGAGGTTAATTAGTTAATTACCGCGGTAATCCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACACGTGACTTGTATTTNTAAAAAAAAAAA]

[+] EMBL AU184851             [GGCTCGAGGAGGCCATCGCCGACGAGCTCCTCCGCTNGCTGCCNCCNCCGCCGCCGGCCTAGACCGTCATCTCTGCATATTAATCCTGCTTGAGGTTAATTAGTTAATTACCGCGGTAATCCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACACGTGACTTGTATTTNTAAAAAAAAAA ]
[+] EMBL BI812621             [                                                      CGGCCTAGACCGTCATCTCTGCATATTAATCCTGCTTGAGGTTAATTAGTTAATTACCGCGGTAATCCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACACGTGAC     TTTGTAAAAAAA    ]
[+] EMBL AU071129             [                                                                                                                                                                               GTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACACGTGACTTGTATTTCTAAAAAAAAAAA]




>consensus_7070#0
GGCTCGAGGAGGCCATCGCCGACGAGCTCCTCCGCTNGCTGCCNCCNCCGCCGCCGGCCT
AGACCGTCATCTCTGCATATTAATCCTGCTTGAGGTTAATTAGTTAATTACCGCGGTAAT
CCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATG
TATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACACGTGACTTGTATTTNTAAAA
AAAAAAA

consensusID : consensus_7070#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence

                              [CCGGCCGTAGACCGGTCAGTCGTCGGCAGTAGTTAAGTCCGTGCGTTGAGGGTTAAGTTAGGTTAAGTTACCGCGGTAATCCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACAAAAAAAAA]

[+] EMBL BI802489             [CCGGCCGTAGACCGGTCAGTCGTCGGCAGTAGTTAAGTCCGTGCGTTGAGGGTTAAGTTAGGTTAAGTTACCGCGGTAATCCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACAAAAAAAAA]




>consensus_7070#1
CCGGCCGTAGACCGGTCAGTCGTCGGCAGTAGTTAAGTCCGTGCGTTGAGGGTTAAGTTA
GGTTAAGTTACCGCGGTAATCCATCAGTGAAATTTATATATGACTGATGATATTGCAGGG
CATCTCGATGCGTATGTATGTATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7070#0      GGCTCGAGGAGGCCATCGCCGACGAGCTCCTCCGCTNGCTGCCNCCNCCGCCGCCGGCCT 60
consensus_7070#1      -------------------------------CCGGCCGTAGACCGGTCAGTCGTCGGC-- 27
                                                     ***   *  * *    * * ** ****  

consensus_7070#0      AGACCGTCATCTCTGCATATTAATCCTGCTTGAGGTTAATTAGTTAATTACCGCGGTAAT 120
consensus_7070#1      -AGTAGTTAAGTCCGTGCGTTGAG---GGTTAAGTTAGGTTA---AGTTACCGCGGTAAT 80
                           ** *  ** *    ** *    * ** ** *   ***   * *************

consensus_7070#0      CCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATG 180
consensus_7070#1      CCATCAGTGAAATTTATATATGACTGATGATATTGCAGGGCATCTCGATGCGTATGTATG 140
                      ************************************************************

consensus_7070#0      TATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACACGTGACTTGTATTTNTAAAA 240
consensus_7070#1      TATCGTCGTTGTTTCGTGGTAATAATAACTGGTAGTAACAAAAAAAAA------------ 188
                      ****************************************    *               

consensus_7070#0      AAAAAAA 247
consensus_7070#1      -------