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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 966 fasta sequence
[TGTCGGCGATGGCCACGATCACCTTGAAGCCGCCGGCGACGGCGGCGGCGGCGGGAGGGGAGGTGTCCGAGGTGGAGCTCTCGGAGGCGGGATCGCCGGATGTCGGCAGCCAGAGCAGCGGGAGCGGTGGGAGCGGGCGGAGCACGGCGGGGTCCTCCGGGTGGGTGTACCACCTCGGCGTGAACTCCATCGGCCACGAGTACCGCCACCTCCGGTTCCTCGTCATCCGCGGCAAGACGGTGGCCATGTACAAGCGCGACCCGAGCAAGAACCCCGGAATCCAACCTATCCGAAAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTATGACCTGATGACGAGAGGGGTTAGTTGGAATAGATCCCAGAATGAAAACGAGCTTAATCTTGATGGGCATCGACCACGTGTAAGGAGATATGCACAAGGCTTGGGGAAACTTGTACGAATTGGTAAAGGGCCAGAAAAGCTCTTGCGGCAGTCTTCAAATCTTCAAAGCCATGAGATAATTAATACAAACTTTGGAGGCGATTCTGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGGTATAAGAATTTTTGAAGATATTGCAAACACAAAGGGTGGAAAAGGGGTAC-TTCTTAAGTCTGTTNGGTGTGGTT-GGGGCGAATCCTGATACTGTATTTGCAGTGGTTCTCAGCTCTGATAAGCATAAGCGATATGAGTGGGATATGCTGACTGCCGATTTGGAATTGGTAGAAACAATTGATGGATACTATGACGTGGTTTATGGAACCTATGAACCTAGATATTTA]
[+] EMBL CB627077 [TGTCGGCGATGGCCACGATCACCTTGAAGCCGCCGGCGACGGCGGCGGCGGCGGGAGGGGAGGTGTCCGAGGTGGAGCTCTCGGAGGCGGGATCGCCGGATGTCGGCAGCCAGAGCAGCGGGAGCGGTGGGAGCGGGCGGAGCACGGCGGGGTCCTCCGGGTGGGTGTACCACCTCGGCGTGAACTCCATCGGCCACGAGTACCGCCACCTCCGGTTCCTCGTCATCCGCGGCAAGACGGTGGCCATGTACAAGCGCGACCCGAGCAAGAACCCCGGAATCCAACCTATCCGAAAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTATGACCTGATGACGAGAGGGGTTAGTTGGAATAGATCCCAGAATGAAAACGAGCTTAATCTTGATGGGCATCGACCACGTGTAAGGAGATATGCACAAGGCTTGGGGAAACTTGTACGAATTGGTAAAGGGCCAGAAAAGCTCTTGCGGCAGTCTTCAAATCTTCAAAGCCATGAGATAATTAATACAAACTTTGGAGGCGATTCTGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGGTATAAGAATTTTTGAAGATATTGCAAACACAAAGGGTGGAAAAGGGGTACTTTCTT AGTCTGTTNGGTGTGGTTGGGGGCGAATCCTGATACTGTATTTGCAGTGGTTCTCAGC ]
[+] EMBL CB628541 [TGTCGGCGATGGCCACGATCACCTTGAAGCCGCCGGCGACGGCGGCGGCGGCGGGAGGGGAGGTGTCCGAGGTGGAGCTCTCGGAGGCGGGATCGCCGGATGTCGGCAGCCAGAGCAGCGGGAGCGGTGGGAGCGGGCGGAGCACGGCGGGGTCCTCCGGGTGGGTGTACCACCTCGGCGTGAACTCCATCGGCCACGAGTACCGCCACCTCCGGTTCCTCGTCATCCGCGGCAAGACGGTGGCCATGTACAAGCGCGACCCGAGCAAGAACCCCGGAATCCAACCTATCCGAAAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTATGACCTGATGACGAGAGGGGTTAGTTGGAATAGATCCCAGAATGAAAACGAGCTTAATCTTGATGGGCATCGACCACGTGTAAGGAGATATGCACAAGGCTTGGGGAAACTTGTACGAATTGGTAAAGGGCCAGAAAAGCTCTTGCGGCAGTCTTCAAATCTTCAAAGCCATGAGATAATTAATACAAACTTTGGAGGCGATTCTGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGGTATAAGAATTTTTGAAGATATTGCAAACACAAAGGGTGGAAAAGGGGTAC TTCTTAAGTCTGTTGGGTGTGGTT GGGGCGAATCCTGATAC ]
[+] EMBL CB631405 [ CCGACAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTATGACCTGATGACGAGAGGGGTTAGTTGGAATAGATCCCAGAATGAAAACGAGCTTAATCTTGATGGGCATCGACCACGTGTAAGGAGATATGCACAAGGCTTGGGGAAACTTGTACGAATTGGTAAAGGGCCAGAAAAGCTCTTGCGGCAGTCTTCAAATCTTCAAAGCCATGAGATAATTAATACAAACTTTGGAGGCGATTCTGGAGATGCATTCGAAGCACACGAATGGAGATATGTTCGAACATTTAATGGTATAAGAATTTTTGAAGATATTGCAAACACAAAGGGTGGAAAAGGGGTAC TTCTTAAGTCTGTT GGTGTGGTT GGGGCGAATCCTGATACTGTATTTGCAGTGGTTCTCAGCTCTGATAAGCATAAGCGATATGAGTGGGATATGCTGACTGCCGATTTGGAATTGGTAGAAACAATTGATGGATACTATGACGTGGTTTATGGAACCTATGAACCTAGATATTTA]
consensusID : consensus_7071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence
[ATCGTTTCTGCATTTGGGGCTGTTCTGGGTTGCAGGTTTTCTTTGGTTCTGCTGGTATTGCTTTATAACCCCGCTTATATATTGTCTGCTTACCAATGATTCTGAAATCCAACCAGTAGAAAATGGGAGTTTTAGAGTAAACTGCTAAGCTGTGTGTGCTTTCTGTATTTGTTCAGTTACTGACCGACGACTGACACTGTCTGCAATTTAAGGATGAAGAAGGTTGCTGGCAATTTTAGGACCGATGCTTGGGCTGGATGCAGTGCATGTGCCTTGTCAGCGTTTGGGTTGTTTTGAATTTTGAGTTGTAGTTTTGATAATATGAACCTTTTTTAAGAAACGGTTATGTTGATCTTGCTAGAATATATACGTAAAATGATTTATGGCTGTTGTCCCTACATAGCCTCAAGGTAGCAAGACAATTGGGTAGATGTGTAGATCTACATTTGACATAACATCACAAAGTGATTCCTTATTTGCAGATTTTTTTTCTCTTGAGATTTTTTGGACATTACATGCATATGGAATCTTATTACCTCTTCTTGTTTTATCTTAGCAACCTATCCGAAAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTAT]
[+] EMBL CB635523 [ATCGTTTCTGCATTTGGGGCTGTTCTGGGTTGCAGGTTTTCTTTGGTTCTGCTGGTATTGCTTTATAACCCCGCTTATATATTGTCTGCTTACCAATGATTCTGAAATCCAACCAGTAGAAAATGGGAGTTTTAGAGTAAACTGCTAAGCTGTGTGTGCTTTCTGTATTTGTTCAGTTACTGACCGACGACTGACACTGTCTGCAATTTAAGGATGAAGAAGGTTGCTGGCAATTTTAGGACCGATGCTTGGGCTGGATGCAGTGCATGTGCCTTGTCAGCGTTTGGGTTGTTTTGAATTTTGAGTTGTAGTTTTGATAATATGAACCTTTTTTAAGAAACGGTTATGTTGATCTTGCTAGAATATATACGTAAAATGATTTATGGCTGTTGTCCCTACATAGCCTCAAGGTAGCAAGACAATTGGGTAGATGTGTAGATCTACATTTGACATAACATCACAAAGTGATTCCTTATTTGCAGATTTTTTTTCTCTTGAGATTTTTTGGACATTACATGCATATGGAATCTTATTACCTCTTCTTGTTTTATCTTAGCAACCTATCCGAAAGGGTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTTGGTCGCCGGATTACTAGCCATGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCAAACAAAGAAAGGAGAGATTGCATGTGGGGACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCAGGCTGATTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7071#0 TGTCGGCGATGGCCACGATCACCTTGAAGCCGCCGGCGACGGCGGCGGCGGCGGGAGGGG 60
consensus_7071#1 ------------------------------------------------------------
consensus_7071#0 AGGTGTCCGAGGTGGAGCTCTCGGAGGCGGGATCGCCGGATGTCGGCAGCCAGAGCAGCG 120
consensus_7071#1 ------------------------------------------------------------
consensus_7071#0 GGAGCGGTGGGAGCGGGCGGAGCACGGCGGGGTCCTCCGGGTGGGTGTACCACCTCGGCG 180
consensus_7071#1 ------------------------------------------------ATCGTTTCTGCA 12
* * ** **
consensus_7071#0 TGAACTCCATCGGCCACGAGTACC--GCCACCTCCGGTTCCTCGTCATCCGCGGCAAGAC 238
consensus_7071#1 T---TTGGGGCTGTTCTGGGTTGCAGGTTTTCTTTGGTTCTGCTGGTATTGCTTTATAAC 69
* * * * * ** * * ** ***** * ** * **
consensus_7071#0 GGTGGCCATGTACAAGCGCGACCCGAGCAAGAACCCCGGAATCCAACCTATCCGAAA-GG 297
consensus_7071#1 CCCGCTTATATAT---TGTCTGCTTACCAATGATTCTGAAATCCAACCAGTAGAAAATGG 126
* ** ** * * * *** * * * ********* * *** **
consensus_7071#0 GTGTTGTAAGTCACACTCTTATGGTGGAGGAGCTT-----GGTCGCCGGATTACTAGCCA 352
consensus_7071#1 GAGTTTTAGAGTAAACTGCTAAGCTGTGTGTGCTTTCTGTATTTGTTCAGTTACTGACC- 185
* *** ** * *** ** * ** * **** * * ***** **
consensus_7071#0 TGGGGAACTGTATGTCTTGCGGTTTTACAATCGGTTGGATCA--AACAAAGAAAGGAGAG 410
consensus_7071#1 -GACGACTGACACTGTCTGCAATTTAAGGATGAAGAAGGTTGCTGGCAATTTTAGGACCG 244
* ** * *** *** * ** * * *** **** *
consensus_7071#0 ATTGCATGTGGGGACCCCGGTGAA---GCTAGGAAATGGGTTGAAGCATTTGAGCAGGCA 467
consensus_7071#1 AT-GCTTGGGCTGGATGCAGTGCATGTGCCTTGTCAGCGTTTGGGTTGTTTTGAATTTTG 303
** ** ** * * * *** * ** * * * *** ***
consensus_7071#0 AAACAGCAGGCTGAT--TATGACCTGATGACGAGAGG-GGTTAGTTGGAATAGATCCCAG 524
consensus_7071#1 AGTTGTAGTTTTGATAATATGAACCTTTTTTAAGAAACGGTTATGTTGATCT--TGCTAG 361
* **** ***** * * *** ***** * ** * * **
consensus_7071#0 AATGAAAACG-AGCTTAATCTTGATGGGCATCGACCACGTGTAAGGAGATATGCACAAGG 583
consensus_7071#1 AATATATACGTAAAATGATTT--ATGGCTGTTGTCCCTACATAGCCTCAAGGTAGCAAGA 419
*** * *** * * ** * **** * * ** ** * ****
consensus_7071#0 CTTGGGGAAACTTGTACGAATTGGTAAAGGGCCAGAAAAGCTCTTGCGGCAGTCTTCAAA 643
consensus_7071#1 CAATTGGGTAGATGTGTAGATCTACATTTGAC---ATAACATCACAAAGTGAT-TCCTTA 475
* ** * *** ** * * * * ** ** * * * * *
consensus_7071#0 TCTTCAAAGCCATGAGATAATTAATACAAACTTTGGAGGCGATTCTGGAGATGCATTCGA 703
consensus_7071#1 TTTGCAGATTTTT---TTTCTCTTGAGATTTTTTGGACATTACA-TGCATATGGAATCTT 531
* * ** * * * * * * ****** * ** * *** * **
consensus_7071#0 AGCACACGAATGGAGATATGTTCGAACATTTAATGGTATAAGAATTTTTGAAGATATTGC 763
consensus_7071#1 ATTAC-CTCTTCTTGTTTTATCTTAGCAACCTAT--CCGAAAGGGTGTTGTAAGT----C 584
* ** * * * * * * * ** ** ** * *** * * *
consensus_7071#0 AAACACAAAGGGTGGAAAAGGGGTACTTCTTAAGTCTGTTNGGTGTGGTTGGGGCGAATC 823
consensus_7071#1 ACACTCTTATGGTGGAGGAGC--TTGGTCGCCGGATTACTAGCCATGG--GGAACTGTAT 640
* ** * * ****** ** * ** * * * * *** ** *
consensus_7071#0 CTGATACTGTATTTGCAGTGGTTCTCAGCTCTGATAAGCATAAGCGATAT-GAGTGGGAT 882
consensus_7071#1 GTCTTGCGGT-TTTACAATCGGT--TGGATCAAACAAAGAAAGGAGAGATTGCATGTGGG 697
* * * ** *** ** * * * * ** * ** * * * ** ** * ** *
consensus_7071#0 ATGCTGACTGCCGATTTGGAATTGGTAGAAACAATTGA-TGGATACTATGACGTGGTTTA 941
consensus_7071#1 GACCCCGGTGAAGCTAGGAAATGGGTTGAAGCATTTGAGCAGGCAAAACAGCA-GGCTGA 756
* ** * * * *** *** *** ** **** * * * * ** * *
consensus_7071#0 TGGAACCTATGAACCTAGATATTTA 966
consensus_7071#1 TTAT--------------------- 760
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||