cluster # 710

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Oryza sativa
cluster # 710 cluster # 710 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_710#0 length = 269 sequences # 1

consensus_710#1 length = 190 sequences # 1

consensusID : consensus_710#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCCAAGGGGTAAAGGGTTTATATGTTTGGAAAAATTATATTATTGGAAATCATTTTGAGGAGCTAAACTAACGGGCCTTTTTAACAAGGGGATTTGTCCCCTTTCCTGATGATTAACATTTAAATTTGTACCTCCCTGGAATTAAGGGGGTGGGCCCAAGGGGGAAGGGTGATTAAAAACTCCCATTTTCCCTGGGTGGGAATGGGATCAGGGGGCCTTTCAAAAAT]

[+] EMBL CF291204             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCCAAGGGGTAAAGGGTTTATATGTTTGGAAAAATTATATTATTGGAAATCATTTTGAGGAGCTAAACTAACGGGCCTTTTTAACAAGGGGATTTGTCCCCTTTCCTGATGATTAACATTTAAATTTGTACCTCCCTGGAATTAAGGGGGTGGGCCCAAGGGGGAAGGGTGATTAAAAACTCCCATTTTCCCTGGGTGGGAATGGGATCAGGGGGCCTTTCAAAAAT]




>consensus_710#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCCAAGGGGTAAAGGGTT
TATATGTTTGGAAAAATTATATTATTGGAAATCATTTTGAGGAGCTAAACTAACGGGCCT
TTTTAACAAGGGGATTTGTCCCCTTTCCTGATGATTAACATTTAAATTTGTACCTCCCTG
GAATTAAGGGGGTGGGCCCAAGGGGGAAGGGTGATTAAAAACTCCCATTTTCCCTGGGTG
GGAATGGGATCAGGGGGCCTTTCAAAAAT

consensusID : consensus_710#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTGGATGAAAAAATTATTTTATTGGAAATCTTTTTGGGGAGCTAAACTTCCGGGCCTTTTTAACAAGGGAATTTGTCCCCTTCCCTGAGGATTAACATTTAAATTTGTACCTCCCTGGAATTAAGGGAGGGGGCCCAA]

[+] EMBL CF291643             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTGGATGAAAAAATTATTTTATTGGAAATCTTTTTGGGGAGCTAAACTTCCGGGCCTTTTTAACAAGGGAATTTGTCCCCTTCCCTGAGGATTAACATTTAAATTTGTACCTCCCTGGAATTAAGGGAGGGGGCCCAA]




>consensus_710#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTGGATGA
AAAAATTATTTTATTGGAAATCTTTTTGGGGAGCTAAACTTCCGGGCCTTTTTAACAAGG
GAATTTGTCCCCTTCCCTGAGGATTAACATTTAAATTTGTACCTCCCTGGAATTAAGGGA
GGGGGCCCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_710#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCCAAGGGGTAAAGGGTT 60
consensus_710#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----------TT 49
                     **************************************** **               **

consensus_710#0      TATATGTTTGGAAAAATTATATTATTGGAAATCATTTTGAGGAGCTAAACTAACGGGCCT 120
consensus_710#1      TATTTGGATGAAAAAATTATTTTATTGGAAATCTTTTTGGGGAGCTAAACTTCCGGGCCT 109
                     *** **  ** ********* ************ ***** ***********  *******

consensus_710#0      TTTTAACAAGGGGATTTGTCCCCTTTCCTGATGATTAACATTTAAATTTGTACCTCCCTG 180
consensus_710#1      TTTTAACAAGGGAATTTGTCCCCTTCCCTGAGGATTAACATTTAAATTTGTACCTCCCTG 169
                     ************ ************ ***** ****************************

consensus_710#0      GAATTAAGGGGGTGGGCCCAAGGGGGAAGGGTGATTAAAAACTCCCATTTTCCCTGGGTG 240
consensus_710#1      GAATTAAGGGAGGGGGCCCAA--------------------------------------- 190
                     ********** * ********                                       

consensus_710#0      GGAATGGGATCAGGGGGCCTTTCAAAAAT 269
consensus_710#1      -----------------------------