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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2038 fasta sequence
[GCCATTTCTTCGATCTCCTCTCCTCTTCTCCTCCACCTCCTCCTCGTGGCTTCGCATCGCGTGGAGCTCGTAGTGTGCTAGATCTAGGAGGAGGCGGCGATGAGGGCGCGGAGGGTTGTCGCGGCGGCGGCGGTGCTGCTGCTGTTCGCCGTTGTGGCGGTGGCGCGGCTCGACCTGGACGACGACGGGGACGACTCGGAGGTGCTGGACGAGCTGCTCGCGGTGGACGAGGAGGAGGAGAGAGGGGAGCTCGGTGGAGGAGGGGAGGCGGCGGCGGCGGAGGCGGTGCGGCGGGCGCAGTCGATGGTGCTGGTGCTCGACAACGACAACGCGCGGCGCGCCGTGGAGGAGAACGCGGAGGTGCTCCTGCTGGGCTACGCGCCGTGGTGCGAGCGCAGCGCGCAGCTCATGCCGCGGTTCGCCGAGGCCGCCGCGGCGCTGCGCGCCATGGGGAGCGCCGTCGCGTTCGCCAAGCTCGACGGGGAGAGGTACCCCAAGGCCGCCTCCGCCGTCGGGGTCAAGGGGTTCCCCACCGTCCTCCTCTTCGTCAACGGCACCGAGCACCAATTCACTGGCCTCCACACCAAGGACGCGATAGTTACTTGGGTAAGAAAGAAGACTGGTGCACCAGCTAGTAGGATTCAGTCAAAGGATTCCGCTGAGGAATTTCTGAAAAAGGATCAAACTTTTGCTGTTGGTCTTTTCAAAAATTTTGAGGGAACAGAATATGAAGAATTCGTGAAAGCAGCAACCTCAGAAAATGAAGTGCAATTTGTCGAAACCAATGATAGGAATGTGGCCAAAATTCTTTTTCCTGGTATTGCATCTGAAGAGCAATTCCTGGGCCTTGTGAAAAGCGAGCCAGAAAAGTTTGAGAAGTTCAACGGGGCATTTGAAGAAAAGGAGATAATTCAATTTGTGGAGCTTAACAAGTTCCCACTTATTACTGTATTCACTGATCTCAACTCTGGTAAAGTTTATGGGAGCCCTATTAAGCTACAGGTCTTCACCTTTGCAGAGGCTTATGATTTCGAAGATCTTGAATCTATGATCCAAGAGGTTGCCAGAGGATTCAAAACAAAGATAATGCTTATATATGTGGATACTGCTGAAGAAAAGCTTGCTAAACCATTCCTGACTCTCTATGGACTCGAACCAGAAAAACCTACTGTGACAGCATTTGATACCAGCAAAGGTACCAAATATCTGATGGAGGCAGAAATTAACGCGAAGAACCTACAGGACTTCTGCTTAAGCCTTCTGGAGGGTACACTTCCGCCATACTTCCGATCAGAACCAGTACCAGAAGAAAAGGGACCTATTGAAAAGGTTGTTGGCCGTACATTTGATTCTTCAGTTCTAGAAAGTCCTCAAAATGTGTTCCTTGAGGTTCATGCACCTTGGTGTGTTGACTGTGAGGCCATAAGTAAAAACGTGGAGAAGTTGGCCAAACATTTCAATGATTTGGGCCAGACTAATCTTAAATTTGCACGCATAGATGCTTCTGTGAATGAACATCCCAAATTGCAGATAAACAACTACCCTACACTGTTGCTATATCCTGCCCAAGACAAAAGCAACCCGATAAAACTTTCAAAGAAATCAAATCTGAAGGACATGGCAAAATTCGTCAAGGAGAAGCTGCAAATTGCGGATGTCGAAACAGTAGCCGCTGGTGACATTGTCAAGGATGAGCTATAGTAGATTTCTCACAGCTTTCGGGCATGCTTTGTGCAGTGAATGAAAGTAACAGCATGCTTGCATTTTGCTGGAATGCTTTCACACCATGCTTGTCTTGGGTTGCAATGTACCATTTGAGATAAGGAAATAGAATAGGAAATGATCAAACGGGTATTTAAGTTGAACTATATGACCTTCCAGATTTACTTACCGTCGCAGCATCAGCTGTTCCTTTTAAAGATGTGATTTACTATACATGTTATTAGTTGTTGATAACAAGCTACATTTGTTTGTTTGTTGAGCTGTGACTTGTAGCATTGTTCTGTAACATAAAACTACAAATTCTGTCCAAAAAAAA]
[+] EMBL AK073970 [GCCATTTCTTCGATCTCCTCTCCTCTTCTCCTCCACCTCCTCCTCGTGGCTTCGCATCGCGTGGAGCTCGTAGTGTGCTAGATCTAGGAGGAGGCGGCGATGAGGGCGCGGAGGGTTGTCGCGGCGGCGGCGGTGCTGCTGCTGTTCGCCGTTGTGGCGGTGGCGCGGCTCGACCTGGACGACGACGGGGACGACTCGGAGGTGCTGGACGAGCTGCTCGCGGTGGACGAGGAGGAGGAGAGAGGGGAGCTCGGTGGAGGAGGGGAGGCGGCGGCGGCGGAGGCGGTGCGGCGGGCGCAGTCGATGGTGCTGGTGCTCGACAACGACAACGCGCGGCGCGCCGTGGAGGAGAACGCGGAGGTGCTCCTGCTGGGCTACGCGCCGTGGTGCGAGCGCAGCGCGCAGCTCATGCCGCGGTTCGCCGAGGCCGCCGCGGCGCTGCGCGCCATGGGGAGCGCCGTCGCGTTCGCCAAGCTCGACGGGGAGAGGTACCCCAAGGCCGCCTCCGCCGTCGGGGTCAAGGGGTTCCCCACCGTCCTCCTCTTCGTCAACGGCACCGAGCACCAATTCACTGGCCTCCACACCAAGGACGCGATAGTTACTTGGGTAAGAAAGAAGACTGGTGCACCAGCTAGTAGGATTCAGTCAAAGGATTCCGCTGAGGAATTTCTGAAAAAGGATCAAACTTTTGCTGTTGGTCTTTTCAAAAATTTTGAGGGAACAGAATATGAAGAATTCGTGAAAGCAGCAACCTCAGAAAATGAAGTGCAATTTGTCGAAACCAATGATAGGAATGTGGCCAAAATTCTTTTTCCTGGTATTGCATCTGAAGAGCAATTCCTGGGCCTTGTGAAAAGCGAGCCAGAAAAGTTTGAGAAGTTCAACGGGGCATTTGAAGAAAAGGAGATAATTCAATTTGTGGAGCTTAACAAGTTCCCACTTATTACTGTATTCACTGATCTCAACTCTGGTAAAGTTTATGGGAGCCCTATTAAGCTACAGGTCTTCACCTTTGCAGAGGCTTATGATTTCGAAGATCTTGAATCTATGATCCAAGAGGTTGCCAGAGGATTCAAAACAAAGATAATGCTTATATATGTGGATACTGCTGAAGAAAAGCTTGCTAAACCATTCCTGACTCTCTATGGACTCGAACCAGAAAAACCTACTGTGACAGCATTTGATACCAGCAAAGGTACCAAATATCTGATGGAGGCAGAAATTAACGCGAAGAACCTACAGGACTTCTGCTTAAGCCTTCTGGAGGGTACACTTCCGCCATACTTCCGATCAGAACCAGTACCAGAAGAAAAGGGACCTATTGAAAAGGTTGTTGGCCGTACATTTGATTCTTCAGTTCTAGAAAGTCCTCAAAATGTGTTCCTTGAGGTTCATGCACCTTGGTGTGTTGACTGTGAGGCCATAAGTAAAAACGTGGAGAAGTTGGCCAAACATTTCAATGATTTGGGCCAGACTAATCTTAAATTTGCACGCATAGATGCTTCTGTGAATGAACATCCCAAATTGCAGATAAACAACTACCCTACACTGTTGCTATATCCTGCCCAAGACAAAAGCAACCCGATAAAACTTTCAAAGAAATCAAATCTGAAGGACATGGCAAAATTCGTCAAGGAGAAGCTGCAAATTGCGGATGTCGAAACAGTAGCCGCTGGTGACATTGTCAAGGATGAGCTATAGTAGATTTCTCACAGCTTTCGGGCATGCTTTGTGCAGTGAATGAAAGTAACAGCATGCTTGCATTTTGCTGGAATGCTTTCACACCATGCTTGTCTTGGGTTGCAATGTACCATTTGAGATAAGGAAATAGAATAGGAAATGATCAAACGGGTATTTAAGTTGAACTATATGACCTTCCAGATTTACTTACCGTCGCAGCATCAGCTGTTCCTTTTAAAGATGTGATTTACTATACATGTTATTAGTTGTTGATAACAAGCTACATTTGTTTGTTTGTTGAGCTGTGACTTGTAGCATTGTTCTGTAACATAAAACTACA ]
[+] EMBL OSC111791 [ GAGCCCTATTAAGCTACAGGTCTTCACCTTTGCAGAGGCTTATGATTTCGAAGATCTTGAATCTATGATCCAAGAGGTTGCCAGAGGATTCAAAACAAAGATAATGCTTATATATGTGGATACTGCTGAAGAAAAGCTTGCTAAACCATTCCTGACTCTCTATGGACTCGAACCAGAAAAACCTACTGTGACAGCATTTGATACCAGCAAAGGTACCAAATATCTGATGGAGGCAGAAATTAACGCGAAGANCCTACAGGACTTCTGCTTAAGCCTTCTGGAGGGTACACTTCCGCCATACTTCCGATCAGAACCAGTACCAGAAGGAAAGGGACCTATTGAAAA ]
[+] EMBL AU075323 [ AANCAAATCTGAAGGACNTGGCAAAATTCGTCAAGGAGAAGCTGCAAATTGCGGATGTCGAAACAGTAGCCGCTGGTGACATTGTCAAGGATGAGCTATAGTAGATTTCTCACAGCTTTCGGGCATGCTTTGTGCAGTGAATGAAAGTAACAGCATGCTTGCATTTTGCTGGAATGCTTTCACACCATGCTTGTCTTGGGTTGCAATGTACCATTTGAGATAAGGAANTAGAATAGGAAATGATCAANCGGGTATTTAAGTTGAACTATATGNCCTTCCAGATTTACTTACCGTCGCNGCATCAGCTGTTCCTTTTAAAGATGTGATTTNCTATACATGTTATTAGTTGTTGATAACAAGCTACATTTGTTTGTTTGTTGAGCTGTGACTTGTAGCATTGTTCTGTAACATAAAACTACAAATTCTGTCCAAAAAAAA]
consensusID : consensus_7101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence
[GCCATTTCTTCGATCTCCTCTCCTCTTCTCCTCCACCTCCTCCTCGTGGCTTCGCATCGCGTGGAGCTCGTAGTGTGCTAGATCTAGGAGGAGGCGGCGATGAGGGCGCGGAGGGTTGTCGCGGCGGCGGCGGTGCTGCTGCTGTTCGCCGTTGTGGCGGTGGCGCGGCTCGACCTGGACGACGACGGGGACGACTCGGAGGTGCTGGACGAGCTGCTCGCGGTGGACGAGGAGGAGGAGAGAGGGGAGCTCGGTGGTTGATGGGCTGCTCTTTTTTCCGGTGCTTTTCGTCCTTCTCCTCCTTGTTGCTGTTTTTTTCTTCTCCCTTCCCCCCCTCCCTCTCTCCTCTTTTTCGCTTTTTTCCTGTTTCTTGTTCCCCTGTGCCATTTCGTCTGTTGTACCTGTGCTCAAATCCGTTTCACTTGGCCATNGGGCATCGTCCCTCGGTTTGCTCTCGCCTCTCCAGTCGTCACCCGTCCAGCCTCTCTTATGCAGGCCTCCCTCCTATTTCCTCTGCTTCATCTCCCTCAGCNTTTTTTCTCCGGTGTACCTTCCACCGC]
[+] EMBL CA753596 [GCCATTTCTTCGATCTCCTCTCCTCTTCTCCTCCACCTCCTCCTCGTGGCTTCGCATCGCGTGGAGCTCGTAGTGTGCTAGATCTAGGAGGAGGCGGCGATGAGGGCGCGGAGGGTTGTCGCGGCGGCGGCGGTGCTGCTGCTGTTCGCCGTTGTGGCGGTGGCGCGGCTCGACCTGGACGACGACGGGGACGACTCGGAGGTGCTGGACGAGCTGCTCGCGGTGGACGAGGAGGAGGAGAGAGGGGAGCTCGGTGGTTGATGGGCTGCTCTTTTTTCCGGTGCTTTTCGTCCTTCTCCTCCTTGTTGCTGTTTTTTTCTTCTCCCTTCCCCCCCTCCCTCTCTCCTCTTTTTCGCTTTTTTCCTGTTTCTTGTTCCCCTGTGCCATTTCGTCTGTTGTACCTGTGCTCAAATCCGTTTCACTTGGCCATNGGGCATCGTCCCTCGGTTTGCTCTCGCCTCTCCAGTCGTCACCCGTCCAGCCTCTCTTATGCAGGCCTCCCTCCTATTTCCTCTGCTTCATCTCCCTCAGCNTTTTTTCTCCGGTGTACCTTCCACCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7101#0 GCCATTTCTTCGATCTCCTCTCCTCTTCTCCTCCACCTCCTCCTCGTGGCTTCGCATCGC 60
consensus_7101#1 GCCATTTCTTCGATCTCCTCTCCTCTTCTCCTCCACCTCCTCCTCGTGGCTTCGCATCGC 60
************************************************************
consensus_7101#0 GTGGAGCTCGTAGTGTGCTAGATCTAGGAGGAGGCGGCGATGAGGGCGCGGAGGGTTGTC 120
consensus_7101#1 GTGGAGCTCGTAGTGTGCTAGATCTAGGAGGAGGCGGCGATGAGGGCGCGGAGGGTTGTC 120
************************************************************
consensus_7101#0 GCGGCGGCGGCGGTGCTGCTGCTGTTCGCCGTTGTGGCGGTGGCGCGGCTCGACCTGGAC 180
consensus_7101#1 GCGGCGGCGGCGGTGCTGCTGCTGTTCGCCGTTGTGGCGGTGGCGCGGCTCGACCTGGAC 180
************************************************************
consensus_7101#0 GACGACGGGGACGACTCGGAGGTGCTGGACGAGCTGCTCGCGGTGGACGAGGAGGAGGAG 240
consensus_7101#1 GACGACGGGGACGACTCGGAGGTGCTGGACGAGCTGCTCGCGGTGGACGAGGAGGAGGAG 240
************************************************************
consensus_7101#0 AGAGGGGAGCTCGGTGGAGGAGGGGAGGCGGCGGCGGCGGAGGCGGTGCGGCGGGCGCAG 300
consensus_7101#1 AGAGGGGAGCTCGGTGGTTGATGGGCTGCTCTTTTTTCCGGTGCTTTTCGTCCTTCTCC- 299
***************** ** *** ** * * ** * ** * * *
consensus_7101#0 TCGATGGTGCTGGTGCTCGACAACGACAACGCGCGG-CGCGCCGTGGAGGAGAACGCGGA 359
consensus_7101#1 TCCTTGTTGCTGTTTTTTTCTTCTCCCTTCCCCCCCTCCCTCTCTCCTCTTTTTCGCTTT 359
** ** ***** * * * * * * * * * * ***
consensus_7101#0 GGTGCTCCTGCTGGGCTACGCGCCGTGGTGCGAGCGCAGCGCGCA-GCTCATGCCGCGGT 418
consensus_7101#1 TTTCCTGTTTCTTGTTCCCCTGTGCCATTTCGTCTGTTGTACCTGTGCTCAAATC-CGTT 418
* ** * ** * * * * ** * * * ***** * ** *
consensus_7101#0 TCGCCGAGGCCGCCGCGGCGCTGCGCGCCATGGGGAGCGCCGTCGCGTTCGCCAAGCTCG 478
consensus_7101#1 TCACTT-GGCCATNG-GGCATCGTCCCTC----GGTTTGCTCTCGC-CTCTCCAGTCGTC 471
** * **** * *** * * * ** ** **** ** *** *
consensus_7101#0 ACGGGGAGAGGTACCCCAAGGCCGCCTCCGCCGTCGGGGTCAAGGGGTTCCCCACCGTCC 538
consensus_7101#1 ACCCGTCCAGCCTCTCTTATGCAGGCCTC-CCTCCTATTTCCTCTGCTTCATCTCCCTCA 530
** * ** * * * ** * * * ** * ** * *** * ** **
consensus_7101#0 TCCTCTTCG-TCAACGGCACCGAGCACCAATTCACTGGCCTCCACACCAAGGACGCGATA 597
consensus_7101#1 GCNTTTTTTCTCCGGTGTACCTTCCACCGC------------------------------ 560
* * ** ** * *** ****
consensus_7101#0 GTTACTTGGGTAAGAAAGAAGACTGGTGCACCAGCTAGTAGGATTCAGTCAAAGGATTCC 657
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 GCTGAGGAATTTCTGAAAAAGGATCAAACTTTTGCTGTTGGTCTTTTCAAAAATTTTGAG 717
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 GGAACAGAATATGAAGAATTCGTGAAAGCAGCAACCTCAGAAAATGAAGTGCAATTTGTC 777
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 GAAACCAATGATAGGAATGTGGCCAAAATTCTTTTTCCTGGTATTGCATCTGAAGAGCAA 837
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 TTCCTGGGCCTTGTGAAAAGCGAGCCAGAAAAGTTTGAGAAGTTCAACGGGGCATTTGAA 897
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 GAAAAGGAGATAATTCAATTTGTGGAGCTTAACAAGTTCCCACTTATTACTGTATTCACT 957
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 GATCTCAACTCTGGTAAAGTTTATGGGAGCCCTATTAAGCTACAGGTCTTCACCTTTGCA 1017
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 GAGGCTTATGATTTCGAAGATCTTGAATCTATGATCCAAGAGGTTGCCAGAGGATTCAAA 1077
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 ACAAAGATAATGCTTATATATGTGGATACTGCTGAAGAAAAGCTTGCTAAACCATTCCTG 1137
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 ACTCTCTATGGACTCGAACCAGAAAAACCTACTGTGACAGCATTTGATACCAGCAAAGGT 1197
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 ACCAAATATCTGATGGAGGCAGAAATTAACGCGAAGAACCTACAGGACTTCTGCTTAAGC 1257
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 CTTCTGGAGGGTACACTTCCGCCATACTTCCGATCAGAACCAGTACCAGAAGAAAAGGGA 1317
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 CCTATTGAAAAGGTTGTTGGCCGTACATTTGATTCTTCAGTTCTAGAAAGTCCTCAAAAT 1377
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 GTGTTCCTTGAGGTTCATGCACCTTGGTGTGTTGACTGTGAGGCCATAAGTAAAAACGTG 1437
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 GAGAAGTTGGCCAAACATTTCAATGATTTGGGCCAGACTAATCTTAAATTTGCACGCATA 1497
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 GATGCTTCTGTGAATGAACATCCCAAATTGCAGATAAACAACTACCCTACACTGTTGCTA 1557
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 TATCCTGCCCAAGACAAAAGCAACCCGATAAAACTTTCAAAGAAATCAAATCTGAAGGAC 1617
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 ATGGCAAAATTCGTCAAGGAGAAGCTGCAAATTGCGGATGTCGAAACAGTAGCCGCTGGT 1677
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 GACATTGTCAAGGATGAGCTATAGTAGATTTCTCACAGCTTTCGGGCATGCTTTGTGCAG 1737
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 TGAATGAAAGTAACAGCATGCTTGCATTTTGCTGGAATGCTTTCACACCATGCTTGTCTT 1797
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 GGGTTGCAATGTACCATTTGAGATAAGGAAATAGAATAGGAAATGATCAAACGGGTATTT 1857
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 AAGTTGAACTATATGACCTTCCAGATTTACTTACCGTCGCAGCATCAGCTGTTCCTTTTA 1917
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 AAGATGTGATTTACTATACATGTTATTAGTTGTTGATAACAAGCTACATTTGTTTGTTTG 1977
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 TTGAGCTGTGACTTGTAGCATTGTTCTGTAACATAAAACTACAAATTCTGTCCAAAAAAA 2037
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 A 2038
consensus_7101#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||