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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 844 fasta sequence
[GGAGGGCTGCGCGACGCGCGGGATGGGAAAGGGAGGTGGGTTCAGTTGGGGGAGAGGGTGTAGAATAGTTATATGGTCCGCTGCGTCGCCGACCGGTTCCCGGGCCTCACCGATGTCTTCCTCGACCACGGCCTCTACATCGCCGCCGGCGCCTCCGCCGCTGCCGCGGAGCGGAGCAGGGCACAAGATTGGGATAACGAAAGCCCCAAGTCAGATGAGC-AACATATGCAGTGTTCCACACCAAGTGAAGATACGCAAGAAGAAAATGGCAGTGACGGTGTCAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCATTGAGGGATATTTAAGTTTTAATGTCTTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCTAAACTGGTTTTTGCACATTTCTGAAAAGGGGCTAGGTGGGAATTGCAAATCATTGCCGGAATCTGCAATCGTTAGTGCTTTCGGTAATTTCTTGTTAGTTGTACTTGTTCTGTTTTCTTTCGTGCATTCAATATTGTTTCACATGTAGCATGATCTGCTTTCATTTCCAAGGCGGGAAAATCTTTCAAACTATGAAGAAATTAATGCTTCCTTATGGTGAATGGTGATCATAGATGCCTCTTTTATTTTATCTATTTTTTCGAATGAAACTTGAGGATCATATTGTAGCAATAGTGAGTTCCGTTGTGGTAATGGTCTCCTTTTTGAGGTTTATCATTGTTCAAGCAGCAGTTCATGTGGGAAACTTGCATGGAGGGTTCATTCATGCTGTATTAATGGTGGTTCCAAGGANNAAAGAGAGGAGGNGTGTGTGGGAGGGGAGGATGGAGTGTGGGGGGTGGG]
[+] EMBL CB630058 [GGAGGGCTGCGCGACGCGCGGGATGGGAAAGGGAGGTGGGTTCAGTTGGGGGAGAGGGTGTAGAATAGTTATATGGTCCGCTGCGTCGCCGACCGGTTCCCGGGCCTCACCGATGTCTTCCTCGACCACGGCCTCTACATCGCCGCCGGCGCCTCCGCCGCTGCCGCGGAGCGGAGCAGGGCACAAGATTGGGATAACGAAAGCCCCAAGTCAGATGAGC AACATATGCAGTGTTCCACACCAAGTGAAGATACGCAAGAAGAAAATGGCAGTGACGGTGTCAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCATTGAGGGATATTTAAGTTTTAATGTCTTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCTAAACTGGTTTTTGCACATTTCTGAAAAGGGGCTAGGTGGGAATTGCAAATCATTGCCGGAATCTGCAATCGTTAGTGCTTTCGGTAATTTCTTGTTAGTTGTACTTGTTCTGTTTTCTTTCGTGCATTCAATATTGTTTCACATGTAGCATGATCTGCTTTCATTTCCAAGGCGGGAAAATCTTTCAAACTATGAAGAAATTAATGCTTCCTTATGGTGAATGGTGATCATAGATGCCTCTTTTATTTTATCTATTTTTTCGAATGAAACTTGAGGATCATATTGTAGCAATAGTGAGTTCCGTTGTGGTAATGGTCTCCTTTTTGAGGTTTATCATTGTTCAAG ]
[+] EMBL CA757675 [ TGTAGAGGAGTTATATGGTCCGCTGCGTCGCCGACCGGTTCCCGGGCCTCACCGATGTCTTCCTCGACCACGGCCTCTACATCGCCGCCGGCGCCTCCGCCGCTGCCGCGGAGCGGAGCAGGGCACAAGATTGGGATAACGAAAGCCCCAAGTCAGATGAGCGGAGATATGCAGTGTTCCACACCAAGTGAAGATACGCAAGAAGAAAATGGCAGTGACGGTGTCAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCATTGAGGGATATTTAAGTTTTAATGTCTTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCTAAACTGGTTTTTGCACATTTCTGAAAAGGGGCTAGGTGGGAATTGCAAATCATTGCCGGAATCTGCAATCGTTAGTGCTTTCGGTAATTTCTTGTTAGTTGTACTTGTTCTGTTTTCTTTCGTGCATTCAATATTGTTTCACATGTAGCATGATCTGCTTTCATTTCCAAGGCGGGAAAATCTNTCAAACTATGAAGAAATTAATGCTTCCTTATGGTGAATGGTGATCATAGATGCCTCTNTTATTTTAACTATTTTTTCGAATGAAACTTGAGGATCATATTGTAGCAATAGTGAGTTCCGTTGTGGTAATGGTCTCCTTTTTGAGGTGTATCATTGGTCAAGCAGCAGTTCATGTGGGAAACTTGCATGGAGGGTTCATTCATGCTGTATTAATGGTGGTTCCAAGGANNAAAGAGAGGAGGNGTGTGTGGGAGGGGAGGATGGAGTGTGGGGGGTGGG]
consensusID : consensus_7104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence
[ACCTCCGGTGATCGCCGCCGCCGCCGCCTCGGGCGATGGCCTCCGCTTCCGGCCTCGTCAACGCCGCCCTCCCGGACGACCTGCTCGCGGAGGTGTTCCGCCGCGTCGCCGCCGCGGGGGGCAAGGCCGACCTCGACAGCTGCGCGCTCGTGTGCCGCCGCTGGCGCGGCGTCGAGCGCGCGTCCCGCCGCGCCGCCAGGGTCCCCGTCGACGGGCCCGACGGCGACGCCGTCGTCCGCTGCGTCGCCGACCGGTTCCCGGGCCTCGCCGATGTCTTCCTCGACCACGGCCTCTACATCGCCGCCGGCGCCTCCGCCGCCGCCGCGGAGCGGAGCAGGGCACAGGGTTGGGATAACGAAAACCCCAAGTTAGATGAGCAACATATGCAGTGTTCCACACTAAGCGAAGATACGCAAAAAGAAAATGGCAGTGATGGTGTTAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCATTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCTAAACTGGTTTTTGCACATTTCTGAAAAGGGGCTGGTGGGAATTGCAAATCGTTGCCGGAATCTGCAATCGTTAGTGCTTTCGGGTGGCTATGTTCAAAACCATGGGTTGATTACTCTGGCAGAGGGATGCAATCTTAGTGAATTAAAGCTGTGTGGTGTTCAAGAGTTGACGGACGAAGGACTGGTTGAATTTGTAAAGATACGTAGTAAATCATTGGTCTCTCTTGATATTTCTTTCTGCAATGGTTGCATAACATACAGATCCCTGTATGCAATTGGAACCTACT]
[+] EMBL CB632965 [ACCTCCGGTGATCGCCGCCGCCGCCGCCTCGGGCGATGGCCTCCGCTTCCGGCCTCGTCAACGCCGCCCTCCCGGACGACCTGCTCGCGGAGGTGTTCCGCCGCGTCGCCGCCGCGGGGGGCAAGGCCGACCTCGACAGCTGCGCGCTCGTGTGCCGCCGCTGGCGCGGCGTCGAGCGCGCGTCCCGCCGCGCCGCCAGGGTCCCCGTCGACGGGCCCGACGGCGACGCCGTCGTCCGCTGCGTCGCCGACCGGTTCCCGGGCCTCGCCGATGTCTTCCTCGACCACGGCCTCTACATCGCCGCCGGCGCCTCCGCCGCCGCCGCGGAGCGGAGCAGGGCACAGGGTTGGGATAACGAAAACCCCAAGTTAGATGAGCAACATATGCAGTGTTCCACACTAAGCGAAGATACGCAAAAAGAAAATGGCAGTGATGGTGTTAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCATTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCTAAACTGGTTTTTGCACATTTCTGAAAAGGGGCTGGTGGGAATTGCAAATCGTTGCCGGAATCTGCAATCGTTAGTGCTTTCGGGTGGCTATGTTCAAAACCATGGGTTGATTACTCTGGCAGAGGGATGCAATCTTAGTGAATTAAAGCTGTGTGGTGTTCAAGAGTTGACGGACGAAGGACTGGTTGAATTTGTAAAGATACGTAGTAAATCATTGGTCTCTCTTGATATTTCTTTCTGCAATGGTTGCATAACATACAGATCCCTGTATGCAATTGGAACCTACT]
consensusID : consensus_7104#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[GTCTCCTTTTTGAGGTTTATCATTGTTCAAGCCAGCAGTTCATGTTGTAAACTTTGCATTGAGGTTTCATTTCATGCTGATATTTAGTGTTGTATTCCCCCGAGTTTCATTGTTTATTGACAACATTTCTTACAAGGTGGTTATGTTCAAAACCATGGGTTGATTACTCTGGCAGAGGGTTGCAATCTTAGTGAATTAAAGCTGTGTGGTGTTCAAGAGTTGACGGACGAAGGACTGGTTGAATTTGTAAAGATACATAGTAAATTATTGGTCTCTCTTGATATTTCTTTCTGCAATGGTTGCATTACAGACAGATCCCTGTATGCTATTGGAACCTACTGCCATAACTTGGAAGTCCTATCCGTGGAGTCCAAGCATGTTAATGAAAACAAAGGAATAATCTCTGTTGCAAAGGATGCCAATATTTGGAATCCTTAAA]
[+] EMBL AU096459 [GTCTCCTTTTTGAGGTTTATCATTGTTCAAGCCAGCAGTTCATGTTGTAAACTTTGCATTGAGGTTTCATTTCATGCTGATATTTAGTGTTGTATTCCCCCGAGTTTCATTGTTTATTGACAACATTTCTTACAAGGTGGTTATGTTCAAAACCATGGGTTGATTACTCTGGCAGAGGGTTGCAATCTTAGTGAATTAAAGCTGTGTGGTGTTCAAGAGTTGACGGACGAAGGACTGGTTGAATTTGTAAAGATACATAGTAAATTATTGGTCTCTCTTGATATTTCTTTCTGCAATGGTTGCATTACAGACAGATCCCTGTATGCTATTGGAACCTACTGCCATAACTTGGAAGTCCTATCCGTGGAGTCCAAGCATGTTAATGAAAACAAAGGAATAATCTCTGTTGCAAAGGATGCCAATATTTGGAATCCTTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7104#1 ACCTCCGGTGATCGCCGCCGCCGCCGCCTCGGGCGATGGCCTCCGCTTCCGGCCTCGTCA 60
consensus_7104#2 ------------------------------------------------------------
consensus_7104#0 ------------------------------------------------------------
consensus_7104#1 ACGCCGCCCTCCCGGACGACCTGCTCGCGGAGGTGTTCCGCCGCGTCGCCGCCGCGGGGG 120
consensus_7104#2 ------------------------------------------------------------
consensus_7104#0 ------------------------------------------------------------
consensus_7104#1 GCAAGGCCGACCTCGACAGCTGCGCGCTCGTGTGCCGCCGCTGGCGCGGCGTCGAGCGCG 180
consensus_7104#2 ------------------------------------------------------------
consensus_7104#0 --------------------------------------GGAGGGCTGCGCGACGCGCGGG 22
consensus_7104#1 CGTCCCGCCGCGCCGCCAGGGTCCCCGTCGACGGGCCCGACGGCGACGCCGTCGTCCGCT 240
consensus_7104#2 ------------------------------------------------------------
consensus_7104#0 ATGGGAAAGGGAGGTGGGTTCAGTTGGGGGAGAGGGTGTAGAATAGTTATATGGTCCGCT 82
consensus_7104#1 GCGTCGCCGACCGGTTCCCGGGCCTCGCCGATGTCTTCCTCGACCACGGCCTCTACATCG 300
consensus_7104#2 ------------------------------------------------------------
consensus_7104#0 GCGTCGCCGACCGGTTCCCGGGCCTCACCGATGTCTTCCTCGACCACGGCCTCTACATCG 142
consensus_7104#1 CCGCCGGCGCCTCCGCCGCCGCCGCGGAGCGGAGCAGGGCACAGGGTTGGGATAACGAAA 360
consensus_7104#2 ------------------------------------------------------------
consensus_7104#0 CCGCCGGCGCCTCCGCCGCTGCCGCGGAGCGGAGCAGGGCACAAGATTGGGATAACGAAA 202
consensus_7104#1 ACCCCAAGTTAGATGAGCAACATATGCAGTGTTCCACACTAAGCGAAGATACGCAAAAAG 420
consensus_7104#2 ------------------------------------------------------------
consensus_7104#0 GCCCCAAGTCAGATGAGCAACATATGCAGTGTTCCACACCAAGTGAAGATACGCAAGAAG 262
consensus_7104#1 AAAATGGCAGTGATGGTGTTAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCA 480
consensus_7104#2 -------------------------------GTCTCCT--TTTTGAGGTTTATCATT--G 25
consensus_7104#0 AAAATGGCAGTGACGGTGTCAACCCAACCTCATTTACTGATGCTGGGCTACTTCATCTCA 322
* * ** * ** * * ****
consensus_7104#1 TTGAGGG--------------------------TTGCAAAGGGCTTGAAAAGCTGACTCT 514
consensus_7104#2 TTCAAGC--------------------------CAGCA----GTTCATGTTGTAAACTTT 55
consensus_7104#0 TTGAGGGATATTTAAGTTTTAATGTCTTGAGGGTTGCAAAGGGCTTGAAAAGCTGACTCT 382
** * * *** * * * *** *
consensus_7104#1 AAACTGGTTTTTGCACATTTCTGAAAAGGGGCTGG-TGGGAATTGCAAATCGTTGCCGGA 573
consensus_7104#2 GCATTGAGGTTT---CATTTCATGCTGATATTTAG-TGTTGTATTCCCCCGAGTTTCATT 111
consensus_7104#0 AAACTGGTTTTTGCACATTTCTGAAAAGGGGCTAGGTGGGAATTGCAAATCATTGCCGGA 442
* ** *** ****** * * ** * * * *
consensus_7104#1 ATCTGCAATCGTTAGTGCTTTCG-GGTGGCTATGTTCAAAAC-CATGGGTTGATTACTCT 631
consensus_7104#2 GTTTATTGACAACATTTCTTACAAGGTGGTTATGTTCAAAAC-CATGGGTTGATTACTCT 170
consensus_7104#0 ATCTGCAATCGTTAGTGCTTTCGGTAATTTCTTGTTAGTTGTACTTGTTCTGTTTTCTTT 502
* * * * * *** * **** * ** ** ** ** *
consensus_7104#1 GGCAGAGG-GATGCAATCTTA-GTGAATTA-AAGCTG-TGTGGTGTTCAAGAGTTGA--- 684
consensus_7104#2 GGCAGAGG-GTTGCAATCTTA-GTGAATTA-AAGCTG-TGTGGTGTTCAAGAGTTGA--- 223
consensus_7104#0 CGTGCATTCAATATTGTTTCACATGTAGCATGATCTGCTTTCATTTCCAAGGCGGGAAAA 562
* * * * * * ** * * * *** * * * * **** **
consensus_7104#1 -----CGGACGAAGGACTGGTTGAA--TTTGTAAAGATACGTAGTAAATCATTGGTCTCT 737
consensus_7104#2 -----CGGACGAAGGACTGGTTGAA--TTTGTAAAGATACATAGTAAATTATTGGTCTCT 276
consensus_7104#0 TCTTTCAAACTATGAAGAAATTAATGCTTCCTTATGGTGAATGGTGA-TCATAGATGCCT 621
* ** * * * ** * ** * * * * * ** * * ** * * **
consensus_7104#1 CTTGATATTTCTTTCTGCAATGGTTGCATAACATACAGATCCCTGTATGCAATTGGAACC 797
consensus_7104#2 CTTGATATTTCTTTCTGCAATGGTTGCATTACAGACAGATCCCTGTATGCTATTGGAACC 336
consensus_7104#0 CTTT-TATTTTATCTATTTTTTCGAATGAAACTTGAGGATCATATTGTAGCAATAGTGAG 680
*** ***** * * ** **** * * * * *
consensus_7104#1 TACT-------------------------------------------------------- 801
consensus_7104#2 TACTGCCATAACTTGGAAGTCCTATCCGTGGAGTCCAAGCATGTTAATGAAAACAAAGGA 396
consensus_7104#0 TTCCGTTGTGGTAATGGTCTCCTTTTTGAGGTTTATCATTGTTCAAGCAGCAGTTCATGT 740
* *
consensus_7104#1 ------------------------------------------------------------
consensus_7104#2 ATAATCTCTGTTGCAAAGGATGCCAATATTTGGAATCCTTAAA----------------- 439
consensus_7104#0 GGGAAACTTGC-ATGGAGGGTTCATTCATGCTGTATTAATGGTGGTTCCAAGGANNAAAG 799
consensus_7104#1 ---------------------------------------------
consensus_7104#2 ---------------------------------------------
consensus_7104#0 AGAGGAGGNGTGTGTGGGAGGGGAGGATGGAGTGTGGGGGGTGGG 844
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||