cluster # 7107

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7107 cluster # 7107 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7107#0 length = 230 sequences # 2

consensus_7107#1 length = 206 sequences # 1
consensus_7107#2 length = 184 sequences # 1

consensusID : consensus_7107#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 230
fasta sequence

                              [GAACATTCCTCCTCCAAGACTCCACAAGTCCAGAGGGAGAAAGTGTGAGAAGAATGTGGCGGAAGGGGAACAAGCGGTTCGGCGGCGGCGGCGAGCCGGCGGCCAAGCGCCGTGCCGCCGGGGACGACGGGCCCTCCGAGAGCNCCGACGACGATATCGT-NTNCNCCAGATATCGAAGAACAGGAGGGTGGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATCC]

[+] EMBL C28075               [GAACATTCCTCCTCCAAGACTCCACAAGTCCAGAGGGAGAAAGTGTGAGAAGAATGTGGCGGAAGGGGAACAAGCGGTTCGGCGGCGGCGGCGAGCCGGCGGCCAAGCGCCGTGCCGCCGGGGACGACGGGCCCTCCGAGAGCNCCGACGACGATATCGT NTNCNCCAGATATCGAAGAACAGGAGGGTGGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATCC]
[+] EMBL CB684473             [        CTCCTCCTAGACTCCACAAGTCCAGAGGGAGAAAGTGTGAGAAGAATGTGGCGGAAGGGGAACAAGCGGTTCGGCGGCGGCGGCGAGCCGGCGGCCAAGCGCCGTGCCGCCGGGGACGACGGGCCCTCCGAGAGCGCCGACGACGATATCGTCGTCGCCCAGATATCGAAGAACAGGAGGGTGGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATC ]




>consensus_7107#0
GAACATTCCTCCTCCAAGACTCCACAAGTCCAGAGGGAGAAAGTGTGAGAAGAATGTGGC
GGAAGGGGAACAAGCGGTTCGGCGGCGGCGGCGAGCCGGCGGCCAAGCGCCGTGCCGCCG
GGGACGACGGGCCCTCCGAGAGCNCCGACGACGATATCGTNTNCNCCAGATATCGAAGAA
CAGGAGGGTGGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATCC

consensusID : consensus_7107#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [CACAAGTCCAGAGGGAGAAAGTGTNAGAAGAATNTAGCNGAAGGGGAACAAGCGGTTCNACAGCANCAGCAAGCGCGGCCAGATGCACCGNACCACGGNGNACGACGGGCCCTCCGAGAGCGCCGACGACGATATCGTCTNCCCAGATATCGAAGAACAGGAGGGTGGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATC]

[+] EMBL C27852               [CACAAGTCCAGAGGGAGAAAGTGTNAGAAGAATNTAGCNGAAGGGGAACAAGCGGTTCNACAGCANCAGCAAGCGCGGCCAGATGCACCGNACCACGGNGNACGACGGGCCCTCCGAGAGCGCCGACGACGATATCGTCTNCCCAGATATCGAAGAACAGGAGGGTGGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATC]




>consensus_7107#1
CACAAGTCCAGAGGGAGAAAGTGTNAGAAGAATNTAGCNGAAGGGGAACAAGCGGTTCNA
CAGCANCAGCAAGCGCGGCCAGATGCACCGNACCACGGNGNACGACGGGCCCTCCGAGAG
CGCCGACGACGATATCGTCTNCCCAGATATCGAAGAACAGGAGGGTGGCGGTGCGGACCT
GGAACGGCAAGGTCGTCGTCGACATC

consensusID : consensus_7107#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence

                              [GAGAAGAATGTNGCGGAAGGGGAACAAGCGGTTCGGCGGCGGCGGCGAGCCGCGGCCAAGCGCCGTGCCGCNNGGGAACGACGGGCCCTCCNAAAGCNCCGACGACGATATCNTNNCCNCTCAGATATCGAAGAACAGGAGGTTNGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATC]

[+] EMBL AU068341             [GAGAAGAATGTNGCGGAAGGGGAACAAGCGGTTCGGCGGCGGCGGCGAGCCGCGGCCAAGCGCCGTGCCGCNNGGGAACGACGGGCCCTCCNAAAGCNCCGACGACGATATCNTNNCCNCTCAGATATCGAAGAACAGGAGGTTNGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATC]




>consensus_7107#2
GAGAAGAATGTNGCGGAAGGGGAACAAGCGGTTCGGCGGCGGCGGCGAGCCGCGGCCAAG
CGCCGTGCCGCNNGGGAACGACGGGCCCTCCNAAAGCNCCGACGACGATATCNTNNCCNC
TCAGATATCGAAGAACAGGAGGTTNGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGA
CATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7107#0      GAACATTCCTCCTCCAAGACTCCACAAGTCCAGAGGGAGAAAGTGTGAGAAGAATGTGGC 60
consensus_7107#2      ----------------------------------------------GAGAAGAATGTNGC 14
consensus_7107#1      ----------------------CACAAGTCCAGAGGGAGAAAGTGTNAGAAGAATNTAGC 38
                                                                     ******** * **

consensus_7107#0      GGAAGGGGAACAAGCGGTTCGGCGGCGGCGGCGAGCCGGCGGCCAA--GCGCCGTGCCGC 118
consensus_7107#2      GGAAGGGGAACAAGCGGTTCGGCGGCGGCGGCGAGCCG-CGGCCAA--GCGCCGTGCCGC 71
consensus_7107#1      NGAAGGGGAACAAGCGGTTCNACAGCANCAGCAAGCG--CGGCCAGATGCACCGNACCAC 96
                       *******************  * **  * ** ***   ******   ** ***  ** *

consensus_7107#0      CGGGGA-CGACGGGCCCTCCGAGAGCNCCGACGACGATATCGTNTNCNC-CAGATATCGA 176
consensus_7107#2      NNGGGAACGACGGGCCCTCCNAAAGCNCCGACGACGATATCNTNNCCNCTCAGATATCGA 131
consensus_7107#1      GGNGNA-CGACGGGCCCTCCGAGAGCGCCGACGACGATATCGTCTNCCC--AGATATCGA 153
                         * * ************* * *** ************** *   * *  *********

consensus_7107#0      AGAACAGGAGGGTGGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATCC 230
consensus_7107#2      AGAACAGGAGGTTNGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATC- 184
consensus_7107#1      AGAACAGGAGGGTGGCGGTGCGGACCTGGAACGGCAAGGTCGTCGTCGACATC- 206
                      *********** * ***************************************