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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1116 fasta sequence
[AATACGCCCACTGACGTGTGGGCCATACCCTCCTCCCCCTGTTCAAAACTTCAAATCGTCGCGTTTTTTCTTCAAACCGTGGCTCTCTCTCTCTCTGCAATAAGAAGTCGTCTTCCACCTCGAGCTCCTACTCTCCCCGGTGATCTCTCGCTTCGATTCGATTCTCTCGTGCAACTGCAAGACACAAGGCCAACTTGATTAGGAGGAGGAGGAAGAAGAAGAAGCGGTGATTGCTAGCTAGCTAGCGAGCTCCGTCGACTCTTGCCTGCAGCCATGATTACGGCGGCGGTGGCAGCCGTGGTGGAGTCCGCGTCGCCATCGCCATCGCCGGCGAGGAAGCGGTGCCGGCTGGGCGGGCCGGTCGTCGCGAACGGCGAGGGTGGTGCTGCTAGTAATACTACCGCCAGTAGCGAGTTCCAGCTGCGGCACTGGCGCCCGGCGGCCGCAGGCAAGCGGGCGGGGCTGGGGATGCGGAGGCGGTGGGCGCCGCCGGAGATAGAGATCCCCGGCGGCGGGAGCGGAGTCGGAGTCGGAGCGCGAGGGTACACCAGCCTCCGGGACATCCTCTCGTCGCCGAAGTACGCCGCGTCGAGCAAGTCCAGCTCCCCCGCCGACGGTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGGGACGTGCACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTCCAGCTGACGCCGTCGGCGAGGGACGCCGCCGACGCCGCCGGCAGGAGGCGGCGGCGCAGCCGCGGCCCGCTCTGCCGCCTCCTCCTCGGCTGCCTCGGCTTCGTCGGCGCGCTCTTCGGACGGTGACTGACCTCGCCGTCTCCGGCGAGACACGCCCGCACGTCTCTTGACCTTTTGACCGATTTTTCTTGCC-TTTTTTTTAATTTCTGTTTTTTTACAGTGTATTATTTAGAGCAGAAATTGGATTTTTCCTGTTCTAATATGGGTTGTAATTAGTTTCTGTAAATAATAGTTTTGTAGGATTTTAGGTGTGAGACAGAGAGATGATGGCAACAATTCAAAAAAAGAAATGATTTGCTTGCTAACACCTGATCGGTTAGCTTGAGGGCAATGCATTTGTGATAC]
[+] EMBL AK108381 [AATACGCCCACTGACGTGTGGGCCATACCCTCCTCCCCCTGTTCAAAACTTCAAATCGTCGCGTTTTTTCTTCAAACCGTGGCTCTCTCTCTCTCTGCAATAAGAAGTCGTCTTCCACCTCGAGCTCCTACTCTCCCCGGTGATCTCTCGCTTCGATTCGATTCTCTCGTGCAACTGCAAGACACAAGGCCAACTTGATTAGGAGGAGGAGGAAGAAGAAGAAGCGGTGATTGCTAGCTAGCTAGCGAGCTCCGTCGACTCTTGCCTGCAGCCATGATTACGGCGGCGGTGGCAGCCGTGGTGGAGTCCGCGTCGCCATCGCCATCGCCGGCGAGGAAGCGGTGCCGGCTGGGCGGGCCGGTCGTCGCGAACGGCGAGGGTGGTGCTGCTAGTAATACTACCGCCAGTAGCGAGTTCCAGCTGCGGCACTGGCGCCCGGCGGCCGCAGGCAAGCGGGCGGGGCTGGGGATGCGGAGGCGGTGGGCGCCGCCGGAGATAGAGATCCCCGGCGGCGGGAGCGGAGTCGGAGTCGGAGCGCGAGGGTACACCAGCCTCCGGGACATCCTCTCGTCGCCGAAGTACGCCGCGTCGAGCAAGTCCAGCTCCCCCGCCGACGGTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGGGACGTGCACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTCCAGCTGACGCCGTCGGCGAGGGACGCCGCCGACGCCGCCGGCAGGAGGCGGCGGCGCAGCCGCGGCCCGCTCTGCCGCCTCCTCCTCGGCTGCCTCGGCTTCGTCGGCGCGCTCTTCGGACGGTGACTGACCTCGCCGTCTCCGGCGAGACACGCCCGCACGTCTCTTGACCTTTTGACCGATTTTTCTTGCC TTTTTTTTAATTTCTGTTTTTTTACAGTGTATTATTTAGAGCAGAAATTGGATTTTTCCTGTTCTAATATGGGTTGTAATTAGTTTCTGTAAATAATAGTTTTGTAGGATTTTAGGTGTGAGACAGAGAGATGATGGCAACAATTCAAAAAAAGAAATGATTTGCTTGCTAACACCTGATCGGTTAGCTTGAGGGCAATGCATTTGTGATAC]
[+] EMBL AU161978 [ CACGCCCGCACGTCTCTTGACCTTTTGACCGATTTTNCTTGCCTTTTTTTTTAATTTCTGTTTTTTTACAGTGTATTATTTAGAGCAGAAATTGGATTTTNCCTGTTCTAATATGGGTTGTAATTAGTTTCTGTAAATAATAGTTTTGTAGGATTTTAGGTGTGAGACAGAGAGATGATGGCAACAATTCAAAAAAAGAAATGATTTGCTTGCTAACACCTGATTGGTTAGCTTGAGGGCAAaaa ]
consensusID : consensus_7124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1014 fasta sequence
[TCGTGGTTTCTCTCTCCTCGCGATGCCAGCTGCCGCCGCCGCCGCCGCCACCGGGATGACGGAGTCGTCGTCGCCGTCGTCGTCTCCCTCCCCGCCGAGGAAGTTCCGGCGTGTGCGGTCGCCGCTGGCGAACGGCGGCGCGGCGGGTGACTTCGAGCTGCGGCACTGGCGCACGCCGCCGAAGCGGGCGCGTTCATCGGCGGCGCCGCCGTGGGCGCCGCCGGAGATCGAGATCCCCTGCGGCGGAGGAGAGGCGGCGGGGAGGGGAGGAGGGTACACGAGCCTCCGGGACATCCTGATGTCGCCGGGGTACGCGGCGTCGTGCTCGCCCGCGGCGTGCGGCGGCGGCGGAGGCGGCGGCAGCTGCGGCGACATACACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTGCAGATGACGCCGTCGGCGAGGGACGACCCCGGGCGCCGCCACCGCCGGCGCTGGCGCGGCCCGCTCTGCCGCCTCCTCCTCGGCTGCCTCAGCTTCATCGGCGC-GCTCTTCCGGCCATGATCGACGACGACTTCTCCCCCTCCGCCTCGGGNGACATGCATGATCGATCGACGGCGACCGTCGGTTACTTGCTAATCNCACACTTGATTATTCCTCTCCCATTCTTCTCTCATTTTCTAGTCTATGTGTGATTAGACTATTTTTCTTTCTTAATTACCAACTTTAGAGGATTTGCTTGCGTTGGAATTTTTGTAAATAACTTGCTAGGATTAGTCTCAAAGAGGAGGAGATGATACGCAACACAAGAGAGATGTTTGATTGCACTGGTAACAAGAACCAGATTAGTTCAGCCTGAGCTCAACTTAATATTTCTTGATTTTTTTTCTCTCTCTGTTTTTTTTGAGTGATGAGCTCATGATTGATCCAATAATGTCCAAGGATATGAGAACANCCAACCATGTGAAGAAGTAGGAGAAGAAAAGGTTAAAATGATTGGGGANAAATAAAGAGAAACGATTTAATTTCTAAAA]
[+] EMBL CA756346 [TCGTGGTTTCTCTCTCCTCGCGATGCCAGCTGCCGCCGCCGCCGCCGCCACCGGGATGACGGAGTCGTCGTCGCCGTCGTCGTCTCCCTCCCCGCCGAGGAAGTTCCGGCGTGTGCGGTCGCCGCTGGCGAACGGCGGCGCGGCGGGTGACTTCGAGCTGCGGCACTGGCGCACGCCGCCGAAGCGGGCGCGTTCATCGGCGGCGCCGCCGTGGGCGCCGCCGGAGATCGAGATCCCCTGCGGCGGAGGAGAGGCGGCGGGGAGGGGAGGAGGGTACACGAGCCTCCGGGACATCCTGATGTCGCCGGGGTACGCGGCGTCGTGCTCGCCCGCGGCGTGCGGCGGCGGCGGAGGCGGCGGCAGCTGCGGCGACATACACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTGCAGATGACGCCGTCGGCGAGGGACGACCCCGGGCGCCGCCACCGCCGGCGCTGGCGCGGCCCGCTCTGCCGCCTCCTCCTCGGCTGCCTCAGCTTCATCGGCGC GCTCTTCCGGCCATGATCGACGACGACTTCTCCCCCTCCGCCTCGGGNGACATGCATGATCGATCGA ]
[+] EMBL BM420264 [ CATCGGCGCGGCTCTTCCGGCCATGATCGACGACGACTTCTCCCCCTCCGCCTCCGGCGACATGCATGATCGATCGACGGCGACCGTCGGTTACTTGCTAATCNCACACTTGATTATTCCTCTCCCATTCTTCTCTCATTTTCTAGTCTATGTGTGATTAGACTATTTTTCTTTCTTAATTACCAACTTTAGAGGATTTGCTTGCGTTGGAATTTTTGTAAATAACTTGCTAGGATTAGTCTCAAAGAGGAGGAGATGATACGCAACACAAGAGAGATGTTTGATTGCACTGGTAACAAGAACCAGATTAGTTCAGCCTGAGCTCAACTTAATATTTCTTGATTTTTTTTCTCTCTCTGTTTTTTTTGAGTGATGAGCTCATGATTGATCCAATAATGTCCAAGGATATGAGAACANCCAACCATGTGAAGAAGTAGGAGAAGAAAAGGTTAAAATGATTGGGGANAAATAAAGAGAAACGATTTAATTTCTAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7124#0 AATACGCCCACTGACGTGTGGGCCATACCCTCCTCCCCCTGTTCAAAACTTCAAATCGTC 60
consensus_7124#1 ------------------------------------------------------------
consensus_7124#0 GCGTTTTTTCTTCAAACCGTGGCTCTCTCTCTCTCTGCAATAAGAAGTCGTCTTCCACCT 120
consensus_7124#1 ------------------------------------------------------------
consensus_7124#0 CGAGCTCCTACTCTCCCCGGTGATCTCTCGCTTCGATTCGATTCTCTCGTGCAACTGCAA 180
consensus_7124#1 ------------------------------------------------------------
consensus_7124#0 GACACAAGGCCAACTTGATTAGGAGGAGGAGGAAGAAGAAGAAGCGGTGATTGCTAGCTA 240
consensus_7124#1 ------------------------------------------------------------
consensus_7124#0 GCTAGCGAGCTCCGTCGACTCTTGCCTGCAGCCATGATTACGGCGGCGGTGGCAGCCGTG 300
consensus_7124#1 --TCGTGGTTTCTCTCTCCTCGCGATGCCAGCTGCCGCCGCCGCCGCCGCCACCGGGATG 58
* * * ** ** *** * **** * ** ** * * * **
consensus_7124#0 GTGGAGTCCGCGTCGCCATCGCCATCGCCGGCGAGGAAGCGGTGCCGGCTGGGCGGGCCG 360
consensus_7124#1 ACGGAGTCGTCGTCGCCGTCGTCGTCTCCCTCCCCGCCGAGGAAGTTCCGGCGTGTGC-G 117
****** ******* *** * ** ** * * * ** * * * * ** *
consensus_7124#0 GTCGTCGCGAACGGCGAGGGTGGTGCTGCTAGTAATACTACCGCCAGTAGCGAGTTCCAG 420
consensus_7124#1 GTCGCCGCTGGCGA--ACGGCGGCGCGGCGGGTGAC------------------TTCGAG 157
**** *** ** * ** ** ** ** ** * *** **
consensus_7124#0 CTGCGGCACTGGCGCCCGGCGGCCGCAGGCAAGCGGGCGGGGCTGGGGATGCGGAGGCGG 480
consensus_7124#1 CTGCGGCACTGGCGCACG----CCGCCG--AAGCGGGCGCGTTCATCGGCGGCGCCGCCG 211
*************** ** **** * ********* * * * * ** *
consensus_7124#0 TGGGCGCCGCCGGAGATAGAGATCCCCGGCGGCGGGAGCGGAGTCGGAGTCGGAGCGCGA 540
consensus_7124#1 TGGGCGCCGCCGGAGATCGAGATCCCCTGCGGCGGAGGAGAGGCGGCGGGGAGGGGAGGA 271
***************** ********* ******* * * * * * * * **
consensus_7124#0 GGGTACACCAGCCTCCGGGACATCCTCTCGTCGCCGAAGTACGCCGCGTCGAGCAAGTCC 600
consensus_7124#1 GGGTACACGAGCCTCCGGGACATCCTGATGTCGCCGGGGTACGCGGCGTCGTGC------ 325
******** ***************** ******* ****** ****** **
consensus_7124#0 AGCTCCCCCGCCGACGGTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGGGAC 660
consensus_7124#1 -------TCGCCCGCGGCGT-----GCGGCGGCGGCGGAGGCGGCGGCAGCTGCGGCGAC 373
**** *** * ************* ********* ** * ** ***
consensus_7124#0 GTGCACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTCCAGCTGACG 720
consensus_7124#1 ATACACATGATACGCCACCCGCTGGTGAAGCACGCGGCGTACGCCTACCTGCAGATGACG 433
* *********************************************** *** *****
consensus_7124#0 CCGTCGGCGAGGGACGCCGCCGACGCCGCCGGCAGGAGGCGGCGGCGCAGCCGCGGCCCG 780
consensus_7124#1 CCGTCGGCGAGGGACGACCCCG--GGCGCCGCCA----CCGCCGGCGCTGGCGCGGCCCG 487
**************** * *** * ***** ** ** ****** * *********
consensus_7124#0 CTCTGCCGCCTCCTCCTCGGCTGCCTCGGCTTCGTCGGCGCGCTCTTCGGACGGTGACTG 840
consensus_7124#1 CTCTGCCGCCTCCTCCTCGGCTGCCTCAGCTTCATCGGCGCGCTCTTCCGGCCATGATCG 547
*************************** ***** ************** * * *** *
consensus_7124#0 AC------CTCGCCGTCTCCGGC----GAGACACGCCCGCACGTCTCTTGAC--CTTTTG 888
consensus_7124#1 ACGACGACTTCTCCCCCTCCGCCTCGGGNGACATGCATGATCGATCGACGGCGACCGTCG 607
** ** ** ***** * * **** ** * ** * * * * *
consensus_7124#0 ACCGATTTTT---CTTGCCTTT---TTTTTAATTTCTGTTTTTTTACAGTGTATTATTTA 942
consensus_7124#1 GTTACTTGCTAATCNCACACTTGATTATTCCTCTCCCATTCTTCTCTCATTTTCTAGTCT 667
** * * * ** * ** * * ** ** * * * ** *
consensus_7124#0 GAGCAGAAATTGG--ATTTTTCCTGTTCTAATATGGGTTGTAATTAGTTTCTGTAAATAA 1000
consensus_7124#1 ATGTGTGATTAGACTATTTTTCTTTCTTAATTACCAACTTTAGAGGATTTGCTTGCGTTG 727
* * * * ******* * * * ** * ** *** * *
consensus_7124#0 TAGTTTT-----GTAGGATTTTAGGTGTGA----GACAGAGAGATGATGGCA-ACAATTC 1050
consensus_7124#1 GAATTTTTGTAAATAACTTGCTAGGATTAGTCTCAAAGAGGAGGAGATGATACGCAACAC 787
* **** ** * **** * * *** **** * *** *
consensus_7124#0 AAAAAAAGAAATGATTTGC-TTGCTAACA----CCTGATCGGTT-AGCTTGAGGGCAATG 1104
consensus_7124#1 AAGAGAGATGTTTGATTGCACTGGTAACAAGAACCAGATTAGTTCAGCCTGAGCTCAACT 847
** * * * **** ** ***** ** *** *** *** **** ***
consensus_7124#0 CA----TTTGTGATAC-------------------------------------------- 1116
consensus_7124#1 TAATATTTCTTGATTTTTTTTCTCTCTCTGTTTTTTTTGAGTGATGAGCTCATGATTGAT 907
* ** ****
consensus_7124#0 ------------------------------------------------------------
consensus_7124#1 CCAATAATGTCCAAGGATATGAGAACANCCAACCATGTGAAGAAGTAGGAGAAGAAAAGG 967
consensus_7124#0 -----------------------------------------------
consensus_7124#1 TTAAAATGATTGGGGANAAATAAAGAGAAACGATTTAATTTCTAAAA 1014
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||