cluster # 7134

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Oryza sativa
cluster # 7134 cluster # 7134 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7134#0 length = 822 sequences # 3

consensus_7134#1 length = 689 sequences # 1

consensusID : consensus_7134#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 822
fasta sequence

                              [ACTTTTCTCTAATCTTCTTCCTCTTCTCCAGCCACACGGCGACACGACACGTACGTTGCAAGCGAGTGCGCGCGCGCGCGAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGCAAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACCAGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAATCCAGATATCGATTTGGTATTGATCCTAGTCAACCCAGGAACATCTTTCCATAAGTCTCAGCTGCAGTCTCTCTCAATCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACCGCAGTTGCTGAATTTCCTGACAGGCAACTTCATGAAGATACC]

[+] EMBL CB635826             [ACTTTTCTCTAATCTTCTTCCTCTTCTCCAGCCACACGGCGACACGACACGTACGTTGCAAGCGAGTGCGCGCGCGCGCGAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGCAAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACCAGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAATCCAGATATCGATTTGGTATTGATCCTAGTCAACCCAGGAACATCTTTCCATAAGTCTCAGCTGCAGTCTCTCTCAAT                                                                                    ]
[+] EMBL CB628199             [ACTTTCTTCTAATCTTCTTCCTCTTCTCCAGCCACACGGCGACACGACACGTACGTTGCAAGCGAGTGCGCGCGCGCCCGAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTATGACTGATCCGGTATCATGAGAGATTAGCCTAGATGTTAGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGGTGAGTATGTGGATAGTGCACTGAAATCCCAGGGCCAGAGAGCAAAAGACTGAGCAGTCTATCTATTCTGAGAATCTCCTGGAGCATGC                                                                                                                                                                                            ]
[+] EMBL CB669779             [                                                        TGCAAGCGAGTGCGCGCGCGCGCGAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGCAAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACCAGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAATCCAGATATCGATTTGGTATTGATCCTAGTCAACCCAGGAACATCTTTCCATAAGTCTCAGCTGCAGTCTCTCTCAGTCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACCGCAGTTGCTGAATTTCCTGACAGGCAACTTCATGAAGATACC]




>consensus_7134#0
ACTTTTCTCTAATCTTCTTCCTCTTCTCCAGCCACACGGCGACACGACACGTACGTTGCA
AGCGAGTGCGCGCGCGCGCGAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTA
CGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCG
GCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGC
GTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAG
GGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTG
GTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCT
CTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGC
AAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGG
ACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACC
AGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAA
TCCAGATATCGATTTGGTATTGATCCTAGTCAACCCAGGAACATCTTTCCATAAGTCTCA
GCTGCAGTCTCTCTCAATCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACC
GCAGTTGCTGAATTTCCTGACAGGCAACTTCATGAAGATACC

consensusID : consensus_7134#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [GCGCGCGCTAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGCAAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACCAGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAATCCAGATATCGATTTGGAACATCTTTCCATAAGTCTCAGCTGCAGTCTCTCTCAGTCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACCGC]

[+] EMBL CB649095             [GCGCGCGCTAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGCAAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACCAGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAATCCAGATATCGATTTGGAACATCTTTCCATAAGTCTCAGCTGCAGTCTCTCTCAGTCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACCGC]




>consensus_7134#1
GCGCGCGCTAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAG
CCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGC
CCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGT
CGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGG
AGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGC
TGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCG
GAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGCAAAGATGTTTG
ATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGTTGAGT
ATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACCAGTCTATCTAG
TCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAATCCAGATATCG
ATTTGGAACATCTTTCCATAAGTCTCAGCTGCAGTCTCTCTCAGTCTTCTTGGATTTGGT
CCCTGAACCGTTCCATTTAACCACACCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7134#0      ACTTTTCTCTAATCTTCTTCCTCTTCTCCAGCCACACGGCGACACGACACGTACGTTGCA 60
consensus_7134#1      ------------------------------------------------------------
                                                                                  

consensus_7134#0      AGCGAGTGCGCGCGCGCGCGAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTA 120
consensus_7134#1      -----------GCGCGCGCTAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTA 49
                                 ******** ****************************************

consensus_7134#0      CGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCG 180
consensus_7134#1      CGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCG 109
                      ************************************************************

consensus_7134#0      GCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGC 240
consensus_7134#1      GCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGC 169
                      ************************************************************

consensus_7134#0      GTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAG 300
consensus_7134#1      GTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAG 229
                      ************************************************************

consensus_7134#0      GGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTG 360
consensus_7134#1      GGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTG 289
                      ************************************************************

consensus_7134#0      GTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCT 420
consensus_7134#1      GTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCT 349
                      ************************************************************

consensus_7134#0      CTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGC 480
consensus_7134#1      CTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGC 409
                      ************************************************************

consensus_7134#0      AAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGG 540
consensus_7134#1      AAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGG 469
                      ************************************************************

consensus_7134#0      ACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACC 600
consensus_7134#1      ACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACC 529
                      ************************************************************

consensus_7134#0      AGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAA 660
consensus_7134#1      AGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAA 589
                      ************************************************************

consensus_7134#0      TCCAGATATCGATTTGGTATTGATCCTAGTCAACCCAGGAACATCTTTCCATAAGTCTCA 720
consensus_7134#1      TCCAGATATCGATTTGG----------------------AACATCTTTCCATAAGTCTCA 627
                      *****************                      *********************

consensus_7134#0      GCTGCAGTCTCTCTCAATCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACC 780
consensus_7134#1      GCTGCAGTCTCTCTCAGTCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACC 687
                      **************** *******************************************

consensus_7134#0      GCAGTTGCTGAATTTCCTGACAGGCAACTTCATGAAGATACC 822
consensus_7134#1      GC---------------------------------------- 689
                      **