These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 822 fasta sequence [ACTTTTCTCTAATCTTCTTCCTCTTCTCCAGCCACACGGCGACACGACACGTACGTTGCAAGCGAGTGCGCGCGCGCGCGAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGCAAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACCAGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAATCCAGATATCGATTTGGTATTGATCCTAGTCAACCCAGGAACATCTTTCCATAAGTCTCAGCTGCAGTCTCTCTCAATCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACCGCAGTTGCTGAATTTCCTGACAGGCAACTTCATGAAGATACC] [+] EMBL CB635826 [ACTTTTCTCTAATCTTCTTCCTCTTCTCCAGCCACACGGCGACACGACACGTACGTTGCAAGCGAGTGCGCGCGCGCGCGAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGCAAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACCAGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAATCCAGATATCGATTTGGTATTGATCCTAGTCAACCCAGGAACATCTTTCCATAAGTCTCAGCTGCAGTCTCTCTCAAT ] [+] EMBL CB628199 [ACTTTCTTCTAATCTTCTTCCTCTTCTCCAGCCACACGGCGACACGACACGTACGTTGCAAGCGAGTGCGCGCGCGCCCGAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTATGACTGATCCGGTATCATGAGAGATTAGCCTAGATGTTAGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGGTGAGTATGTGGATAGTGCACTGAAATCCCAGGGCCAGAGAGCAAAAGACTGAGCAGTCTATCTATTCTGAGAATCTCCTGGAGCATGC ] [+] EMBL CB669779 [ TGCAAGCGAGTGCGCGCGCGCGCGAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGCAAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACCAGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAATCCAGATATCGATTTGGTATTGATCCTAGTCAACCCAGGAACATCTTTCCATAAGTCTCAGCTGCAGTCTCTCTCAGTCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACCGCAGTTGCTGAATTTCCTGACAGGCAACTTCATGAAGATACC] consensusID : consensus_7134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [GCGCGCGCTAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGCAAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACCAGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAATCCAGATATCGATTTGGAACATCTTTCCATAAGTCTCAGCTGCAGTCTCTCTCAGTCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACCGC] [+] EMBL CB649095 [GCGCGCGCTAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTACGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCGGCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGCGTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAGGGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTGGTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCTCTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGCAAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGGACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACCAGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAATCCAGATATCGATTTGGAACATCTTTCCATAAGTCTCAGCTGCAGTCTCTCTCAGTCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7134#0 ACTTTTCTCTAATCTTCTTCCTCTTCTCCAGCCACACGGCGACACGACACGTACGTTGCA 60 consensus_7134#1 ------------------------------------------------------------ consensus_7134#0 AGCGAGTGCGCGCGCGCGCGAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTA 120 consensus_7134#1 -----------GCGCGCGCTAGTGATCAAGGAGAAGACCAGAGGCGCCGCCGTCACCGTA 49 ******** **************************************** consensus_7134#0 CGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCG 180 consensus_7134#1 CGTCGAGCCAGCCGCGCAACCACCCATGCCGATGCCGGCGACGGTGGCGGCAGCGCCGCG 109 ************************************************************ consensus_7134#0 GCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGC 240 consensus_7134#1 GCCCCTCCTGCCCGGCCTGCCACGCCGCGGGACGGCGCCGCCGCGGGGGCGGTGGAGCGC 169 ************************************************************ consensus_7134#0 GTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAG 300 consensus_7134#1 GTCCGCGGCGTCGGCGGCGTCGCGGGGCGTGGCCGCGAAGGCGGCGAGGAGAGGGGTGAG 229 ************************************************************ consensus_7134#0 GGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTG 360 consensus_7134#1 GGAGTACGTGGAGGCGGCGCGGGAGATGGTGCGGCGGCCGGACGGCGGCCCGGCGAGGTG 289 ************************************************************ consensus_7134#0 GTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCT 420 consensus_7134#1 GTTCTCGCCGCTGGAGTGCGGCGGCGGCGGAGGGCGGCTGCCCGGCGCGCCCACGATGCT 349 ************************************************************ consensus_7134#0 CTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGC 480 consensus_7134#1 CTACTTGCCCGGAATTGATGGAGTTGGCTTAGGACTGATCCGGCATCATGAGAGATTAGC 409 ************************************************************ consensus_7134#0 AAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGG 540 consensus_7134#1 AAAGATGTTTGATATGTGGTGCTTACATATACCTGTTGAAGATTGTACGTCCTTTGAAGG 469 ************************************************************ consensus_7134#0 ACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACC 600 consensus_7134#1 ACTAGTTGAGTATGTGGAGAGTGCAGTGAAATCAGAGGGCCAGAGAGCAAGAGACAGACC 529 ************************************************************ consensus_7134#0 AGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAA 660 consensus_7134#1 AGTCTATCTAGTCGGAGAATCCGTTGGAGCATGCATTGCTCTTGCCGTGGCGGCGCGAAA 589 ************************************************************ consensus_7134#0 TCCAGATATCGATTTGGTATTGATCCTAGTCAACCCAGGAACATCTTTCCATAAGTCTCA 720 consensus_7134#1 TCCAGATATCGATTTGG----------------------AACATCTTTCCATAAGTCTCA 627 ***************** ********************* consensus_7134#0 GCTGCAGTCTCTCTCAATCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACC 780 consensus_7134#1 GCTGCAGTCTCTCTCAGTCTTCTTGGATTTGGTCCCTGAACCGTTCCATTTAACCACACC 687 **************** ******************************************* consensus_7134#0 GCAGTTGCTGAATTTCCTGACAGGCAACTTCATGAAGATACC 822 consensus_7134#1 GC---------------------------------------- 689 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||