cluster # 7136

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Oryza sativa
cluster # 7136 cluster # 7136 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7136#0 length = 484 sequences # 3

consensus_7136#1 length = 309 sequences # 1

consensusID : consensus_7136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 484
fasta sequence

                              [TTTTACAGGCATAAACGGATCATGAGATATTGAATCGGATCAATCTATAGTTATATACTGTATACTTATGCGTCGAAGGGCTTCAGGGGGCAAAAAGGAAGGTGCATGTAGCGTCCATTTTGACAGCTTACACTAAACCTAGTAGATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATGCTACACAACTACACGATGTATTGTAAGTCTATATTTACATATGCCAAAAACGAAGAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCTGTATCGGTCTTGATAACTCTGGTATTATAAGAACCACAGGAGCCGCATTTATGGTACAACCAGTGAAATCGAGACCTCCCTTTTCTTTCACAATCATTACAAAGTATATCCTGACACCGATCACGGTATTCCTCAGGAAGCTCTTCAGCAGCCAGCAAGGCGTCCAACATGCCAAAGTACACCG]

[+] EMBL CF316434             [TTTTACAGGCATAAACGGATCATGAGATATTGAATCGGATCAATCTATAGTTATATACTGTATACTTATGCGTCAAAGGGCTTCAGGGGGCAAAAAGGAAGGTGCATGTAGCGTCCATTTTGACAGCTTACACTACACCTATTAGATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATGCTACACAACTACACGATGTATTGTAAGTCTATATTTACATATGCCAAAAACGAAGAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCTGTATCGGTCTTGATAACTCTGGTATTATAAGAACCACAGGAGCCGCATTTATGGTACAACCAGTGAAATCGAGACCTCCCTTTTCTTTCACAATCATTACAAAGTATATCCTGACACCGATCACGGTATTCCTCAGGAAGCTCTTCAGCAGCCAGCAAGGCGTCCAACATGCCAAAGTACACCG]
[+] EMBL BI305395             [                                            CTATAGTTATATACTGTATACTTATGCGTCGAAGGGCTTCAGGGGGCAAAAAGGAAGGTGCATGTAGCGTCCATTTTGACAGCTTACACTAAACCTAGTAGATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATGCTACACAACTACACGATGTATTGTAAGTCTATATTTACATATGCCAAAAACGAAGAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCTGTATCGGTCTTGATAACTCT                                                                                                                                                                    ]
[+] EMBL CB965237             [                                            CTATAGTTATATACTGTATACTTATGCGTCGAAGGGCTTCAGGGGGCAGAAAGGAAGGTGCATGTAGCGTCCATTTTGACAGCTTACACTAGACCTAGTAGATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATGCTACACAACTACACGATGTATTGTAAGTCTATATTTACATATGCCAAAAACGAAGAAAGAATAATTCCCCACTAGTTTGGCGTAGAACAATCTGCTGTATCGGTCTT                                                                                                                                                                             ]




>consensus_7136#0
TTTTACAGGCATAAACGGATCATGAGATATTGAATCGGATCAATCTATAGTTATATACTG
TATACTTATGCGTCGAAGGGCTTCAGGGGGCAAAAAGGAAGGTGCATGTAGCGTCCATTT
TGACAGCTTACACTAAACCTAGTAGATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAA
GGGATGAAAAATATGGTAGCTATGCTACACAACTACACGATGTATTGTAAGTCTATATTT
ACATATGCCAAAAACGAAGAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCT
GTATCGGTCTTGATAACTCTGGTATTATAAGAACCACAGGAGCCGCATTTATGGTACAAC
CAGTGAAATCGAGACCTCCCTTTTCTTTCACAATCATTACAAAGTATATCCTGACACCGA
TCACGGTATTCCTCAGGAAGCTCTTCAGCAGCCAGCAAGGCGTCCAACATGCCAAAGTAC
ACCG

consensusID : consensus_7136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTGAACCGGATCAACCTATAGTTATATACTGTATACTTATGCGTCGAGGGGCTTCAGGGGGCAAAAAGGAAGGGGCATGTAGCGCCCATCTTGACGGTTTACTCTAAACCTAGTAAATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATCCCCCCCCCCTACCCGATGTATTGGAAGTCTATATTTACATATGCCAAAAACGAAAAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCTTGTCTCGCCCTCT]

[+] EMBL CA761292             [TTTTTTTTTTTTTTTTTTTTTTTTTTTGAACCGGATCAACCTATAGTTATATACTGTATACTTATGCGTCGAGGGGCTTCAGGGGGCAAAAAGGAAGGGGCATGTAGCGCCCATCTTGACGGTTTACTCTAAACCTAGTAAATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGATGAAAAATATGGTAGCTATCCCCCCCCCCTACCCGATGTATTGGAAGTCTATATTTACATATGCCAAAAACGAAAAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCTTGTCTCGCCCTCT]




>consensus_7136#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTGAACCGGATCAACCTATAGTTATATACTGTATA
CTTATGCGTCGAGGGGCTTCAGGGGGCAAAAAGGAAGGGGCATGTAGCGCCCATCTTGAC
GGTTTACTCTAAACCTAGTAAATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAAGGGA
TGAAAAATATGGTAGCTATCCCCCCCCCCTACCCGATGTATTGGAAGTCTATATTTACAT
ATGCCAAAAACGAAAAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCTTGTC
TCGCCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7136#0      TTTTACAGGCATAAACGGATCATGAGATATTGAATCGGATCAATCTATAGTTATATACTG 60
consensus_7136#1      TTTTTTTTTTTTTTTTTTTTTTT----TTTTGAACCGGATCAACCTATAGTTATATACTG 56
                      ****       *       *  *    * ***** ******** ****************

consensus_7136#0      TATACTTATGCGTCGAAGGGCTTCAGGGGGCAAAAAGGAAGGTGCATGTAGCGTCCATTT 120
consensus_7136#1      TATACTTATGCGTCGAGGGGCTTCAGGGGGCAAAAAGGAAGGGGCATGTAGCGCCCATCT 116
                      **************** ************************* ********** **** *

consensus_7136#0      TGACAGCTTACACTAAACCTAGTAGATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAA 180
consensus_7136#1      TGACGGTTTACTCTAAACCTAGTAAATTGCAGCTAGGCTTGACAAAAATGAACTAGCTAA 176
                      **** * **** ************ ***********************************

consensus_7136#0      GGGATGAAAAATATGGTAGCTATGCTACACAACTACACGATGTATTGTAAGTCTATATTT 240
consensus_7136#1      GGGATGAAAAATATGGTAGCTATCCCCCCCCCCTACCCGATGTATTGGAAGTCTATATTT 236
                      *********************** *  * *  **** ********** ************

consensus_7136#0      ACATATGCCAAAAACGAAGAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCT 300
consensus_7136#1      ACATATGCCAAAAACGAAAAAAGAATAATTCCCCACTAGTTTGGCGTAAAACAATCTGCT 296
                      ****************** *****************************************

consensus_7136#0      -GTATCGGTCTTGATAACTCTGGTATTATAAGAACCACAGGAGCCGCATTTATGGTACAA 359
consensus_7136#1      TGTCTCGCCCTCT----------------------------------------------- 309
                       ** ***  **                                                 

consensus_7136#0      CCAGTGAAATCGAGACCTCCCTTTTCTTTCACAATCATTACAAAGTATATCCTGACACCG 419
consensus_7136#1      ------------------------------------------------------------
                                                                                  

consensus_7136#0      ATCACGGTATTCCTCAGGAAGCTCTTCAGCAGCCAGCAAGGCGTCCAACATGCCAAAGTA 479
consensus_7136#1      ------------------------------------------------------------
                                                                                  

consensus_7136#0      CACCG 484
consensus_7136#1      -----