These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1453 fasta sequence [TCCTTATTTTTACAAATTCTCACGTTCCATAACTTCCGGAACGTTTACAAGATAACCCACAAAGCTGCCTCCAGAAAAACCCTTTTACTCTAAGATTCTTGCCACTAATTATCATGGCATTTTGTAAAGAGTCCAGGTATCGCTGACAAAATGAACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCTACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACAGATCTGACCTGTTCCACCTGTACACTCAAAACAAGACTTAAACCTAAGCCTAAGAACTCCAGAAATCTAGTTTACTCAAAATACCAAGGCTATTCTAACCACGATCAAAATGTATGCTAATGCATATCTAACTTTAATATATCTGCACTAGTCTGGAATACTCCTAGAAATTGGAGGAAAAGTTGCAGGTTTAGATCACTAGGCTGCCTCTCAAATTCAGAATGTGGCTGACCAACCATGAGATAAAAGGTGGCTTGTCAGCACCAAGCATTTCAGTGCCCTTGTAAGCCTATAAGTGATTACATTGCCCAGAATCTATCAGGGTCAGGGCTAAAGAGCGAATAATCTTGTATCTCCAGATTTGCTAAATGCCAATTGACGAATCCAGCTTGCAATGATTTGACAACAAAGAGGATAATAGGCAGTAT-CCACCATTCATTGTCTT-CCCTACTCTTAAAGCTTTTAGTGTTGAGTGCATGAGGAACGGAAGACACTGATAAAGAAGACAGCCCAGAGTACAAAGCTCCATAAATGATTGCTACAATAATGTTTATGACAGAAGTAGTATTCCAAAGTGCAAAATACGGGTCACGGAAGATCTCTTTGGTCCTCGGCTGAAAAGTGCATTGAGACCAGCAAGAAAGGGAGACAGCAAAGCAAGGGGAGGAATAAGAAGTACAGCAAGGAATGCTCCAACAGATATCCAATAGTACTGCACAAGCATAAGCAGGGTGACGGAAAAATCACCCAGTAGTATAATACATATAAGCAGCTGCAAAGTTTCCGCATAACCAATGGGCCTACAATTTTGCAATAGCAATGAGAAAGGGAAAAGATAATCTCTTTTACATTCCAGTGATTTTAGTGTACCCTCATTGATTATCCCACCATTCACTCCACCTGTCAAACGCTTTCTAGAAACAGCATAGCTTGTGCAAGGCTGATCTTGATTTAGCTTCTTGGAACTGATGTTCTTCCTTGAGCGATCGATGAATTCTGAGACATGATCATGCTGATGAAGACTCTTATAGAAGTGCTCATTGACAGCAACAACAATACCTAGCTGATAATAACAAGAAGCAGTGGCTTGGAACCATCCTAACTCCACTCGAACACCATGCCGCTCAAGTTGGGGATTTCCATGACTATTAATCCAAGAAACAACAGGTCCCAAAGTTGATCGGATGTTCCCTT] [+] EMBL CB629405 [TCCTTATTTTTACAAATTCTCACGTTCCATAACTTCCGGAACGTTTACAAGATAACCCACAAAGCTGCCTCCAGAAAAACCCTTTTACTCTAAGATTCTTGCCACTAATTATCATGGCATTTTGTAAAGAGTCCAGGTATCGCTGACAAAATGAACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCTACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACAGATCTGACCTGTTCCACCTGTACACTCAAAACAAGACTTAAACCTAAGCCTAAGAACTCCAGAAATCTAGTTTACTCAAAATACCAAGGCTATTCTAACCACGATCAAAATGTATGCTAATGCATATCTAACTTTAATATATCTGCACTAGTCTGGAATACTCCTAGAAATTGGAGGAAAAGTTGCAGGTTTAGATCACTAGGCTGCCTCTCAAATTCAGAATGTGGCTGACCAACCATGAGATAAAAGGTGGCTTGTCAGCACCAAGCATTTCAGTGCCCTTGTAAGCCTATAAGTGATTACATTGCCCAGAATCTATCAGGGTCAGGGCTAAAGAGCGAATAATCTTGTATCTCCAGATTTGCTAAATGCCAATTGACGAATCCAGCTTGCAATGATTTGACAACAAAGAGGATAATAGGCAGTAT CCACCATTCATTGTCTT CCCTACTCTTAAAGCTTTTAGTGTTGAGTGCATGAGGAACGGAAGACACTGATAAAGAAGACAGCCCAGAGTACAAAGCTCCATAAATGATTGCTACAATA ] [-] EMBL CA765690 [ gcCAGTATCCCCCCATTCCATGTCTTCCCCTACTCTTAAAGC TTTAGTGTTGAGTGCATGAGGANCGGAAGACNCTGATAAAGAAGACAGCCCAGAGTACAAAGCTCCATAAATGATTGCTACAATAATGTTTATGACAGAAGTAGTATTCCAAAGTGCAAAATACGGGTCACGGAAGATCTCTTTGGTCCTCGGCTGAAAAGTGCATTGAGACCAGCAAGAAAGGGAGACAGCAAAGCAAGGGGAGGAATAAGAAGTACAGCAAGGAATGCTCCAACAGATATCCAATAGTACTGCACAAGCATAAGCAGGGTGACGGAAAAATCACCCAGTAGTATAATACATATAAGCAGCTGCAAAGTTTCCGCATAACCAATGGGCCTACAATTTTGCAATAGCAATGAGAAAGGGAAAAGATAATCTCTTTTACATTCCAGTGATTTTAGTGTACCCTCATTGATTATCCCACCATTCACTCCACCTGTCAAACGCTTTCTAGAAACAGCATAGCTTGTGCAAGGCTGATCTTGATTTAGCTTCTTGGAACTGATGTTCTTCCTTGAGCGATCGATGAATTCTGAGACATGATCATGCTGATGAAGACTCTTATAGAAGTGCTCATTGACAGCAACAACAATACCTAGCTGATAATAACAAGAAGCAGTGGCTTGGAACCATCCTAACTCCACTCGAACACCATGCCGCTCAAGTTGGGGATTTCCATGACTATTAATCCAAGAAACAACAGGTCCCAAAGTTGATCGGATGTTCCCTT] consensusID : consensus_7142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [TTTTTTTTTTTTTTAAATAAATCATAATATTCTACAAAATTCTCACGTTCCATAACTTCCGGAAAGTTTACAAGATAACCCACAAAGCTGCCTCCAGAAAAACCCTTTTACTCTAAGATTCTTGCCACTAATTATCATGGCATTTTGTAAAGAGTCCAGGTATCGCTGACAAAATGAACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCTACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACCCCCTTGTCTCGTCCTCT] [+] EMBL CA761137 [TTTTTTTTTTTTTTAAATAAATCATAATATTCTACAAAATTCTCACGTTCCATAACTTCCGGAAAGTTTACAAGATAACCCACAAAGCTGCCTCCAGAAAAACCCTTTTACTCTAAGATTCTTGCCACTAATTATCATGGCATTTTGTAAAGAGTCCAGGTATCGCTGACAAAATGAACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCTACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACCCCCTTGTCTCGTCCTCT] consensusID : consensus_7142#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [GTGTACAGGTGGAACAGGTCAGATCTGTTGTACATTGTGTAAGTAATAGTGACCCTTGCTAATTCAATTGTAGAGTAGTGCTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTGG] [+] EMBL CF308366 [GTGTACAGGTGGAACAGGTCAGATCTGTTGTACATTGTGTAAGTAATAGTGACCCTTGCTAATTCAATTGTAGAGTAGTGCTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7142#0 ---------------------TCCTTAT-TTTTACAAA-TTCTCACGTTCCATAACTTCC 37 consensus_7142#1 TTTTTTTTTTTTTTAAATAAATCATAATATTCTACAAAATTCTCACGTTCCATAACTTCC 60 consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 GGAACGTTTACAAGATAACCCACAAAGCTGCCTCCAGA-AAAACCCTTTTACTCTAAGAT 96 consensus_7142#1 GGAAAGTTTACAAGATAACCCACAAAGCTGCCTCCAGA-AAAACCCTTTTACTCTAAGAT 119 consensus_7142#2 -----------------------------GTGTACAGGTGGAACAGGTCAGATCTGTTGT 31 * * *** *** * *** * consensus_7142#0 TCTTGCCACTAATTATCATGGCATTTTGTAAA--GAGTCCAG-GTATCGCTGACAAAATG 153 consensus_7142#1 TCTTGCCACTAATTATCATGGCATTTTGTAAA--GAGTCCAG-GTATCGCTGACAAAATG 176 consensus_7142#2 ACATTGTGTAAGTAATAGTGACCCTTGCTAATTCAATTGTAGAGTAGTGCTTAGAAAAAA 91 * * * * ** ** * ** *** * * ** *** *** * **** consensus_7142#0 AACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCT 213 consensus_7142#1 AACCGGGAAAAACAGGAAAGGGAAAAAAAGAACCAAGCAACGTTTTCTAAGCACTACTCT 236 consensus_7142#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 151 ** ***** * *** ******* ** ** ** ** * * consensus_7142#0 ACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACAGATCTGACCTGTTC 273 consensus_7142#1 ACAATTGAATTAGCAAGGGTCACTATTACTTACACAATGTACAACCCCCTTGTCTCGTCC 296 consensus_7142#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTTGG------- 204 * ** ** * ** * * * * * ** * ** ** consensus_7142#0 CACCTGTACACTCAAAACAAGACTTAAACCTAAGCCTAAGAACTCCAGAAATCTAGTTTA 333 consensus_7142#1 TCT--------------------------------------------------------- 299 consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 CTCAAAATACCAAGGCTATTCTAACCACGATCAAAATGTATGCTAATGCATATCTAACTT 393 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 TAATATATCTGCACTAGTCTGGAATACTCCTAGAAATTGGAGGAAAAGTTGCAGGTTTAG 453 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 ATCACTAGGCTGCCTCTCAAATTCAGAATGTGGCTGACCAACCATGAGATAAAAGGTGGC 513 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 TTGTCAGCACCAAGCATTTCAGTGCCCTTGTAAGCCTATAAGTGATTACATTGCCCAGAA 573 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 TCTATCAGGGTCAGGGCTAAAGAGCGAATAATCTTGTATCTCCAGATTTGCTAAATGCCA 633 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 ATTGACGAATCCAGCTTGCAATGATTTGACAACAAAGAGGATAATAGGCAGTATCCACCA 693 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 TTCATTGTCTTCCCTACTCTTAAAGCTTTTAGTGTTGAGTGCATGAGGAACGGAAGACAC 753 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 TGATAAAGAAGACAGCCCAGAGTACAAAGCTCCATAAATGATTGCTACAATAATGTTTAT 813 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 GACAGAAGTAGTATTCCAAAGTGCAAAATACGGGTCACGGAAGATCTCTTTGGTCCTCGG 873 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 CTGAAAAGTGCATTGAGACCAGCAAGAAAGGGAGACAGCAAAGCAAGGGGAGGAATAAGA 933 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 AGTACAGCAAGGAATGCTCCAACAGATATCCAATAGTACTGCACAAGCATAAGCAGGGTG 993 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 ACGGAAAAATCACCCAGTAGTATAATACATATAAGCAGCTGCAAAGTTTCCGCATAACCA 1053 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 ATGGGCCTACAATTTTGCAATAGCAATGAGAAAGGGAAAAGATAATCTCTTTTACATTCC 1113 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 AGTGATTTTAGTGTACCCTCATTGATTATCCCACCATTCACTCCACCTGTCAAACGCTTT 1173 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 CTAGAAACAGCATAGCTTGTGCAAGGCTGATCTTGATTTAGCTTCTTGGAACTGATGTTC 1233 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 TTCCTTGAGCGATCGATGAATTCTGAGACATGATCATGCTGATGAAGACTCTTATAGAAG 1293 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 TGCTCATTGACAGCAACAACAATACCTAGCTGATAATAACAAGAAGCAGTGGCTTGGAAC 1353 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 CATCCTAACTCCACTCGAACACCATGCCGCTCAAGTTGGGGATTTCCATGACTATTAATC 1413 consensus_7142#1 ------------------------------------------------------------ consensus_7142#2 ------------------------------------------------------------ consensus_7142#0 CAAGAAACAACAGGTCCCAAAGTTGATCGGATGTTCCCTT 1453 consensus_7142#1 ---------------------------------------- consensus_7142#2 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||