cluster # 7143

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7143 cluster # 7143 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7143#0 length = 616 sequences # 2

consensus_7143#1 length = 280 sequences # 1
consensus_7143#2 length = 279 sequences # 1

consensusID : consensus_7143#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 616
fasta sequence

                              [TTTTTTTTTTTTTTTTTCGACGTGATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGTATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCTTTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCCTTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTCCTTCTTCTCTGGC-TTC-TTCTCT-TCCTT-GGCAGGTCCAACAGAAACGATGTCGATCTTGCCGATCTTCCTCAGCTTCTTCGCTATCTCGACGGTGTCCATGTCGCCAATGATGGTCATCTTGTTGTCCTTGAGGTCTGCAGCTATCGAATCAATACCGTAGATATCTGCGACGGCTTCGATCGCTTTCTGCTTCGTCTTTTCGTCAGTCATGGTTGGAACCTTGAGCACCACCTTCTGCTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCANCAGAGGGAAGGTTGGATCAGGGAGACAGATAGAAATGTGAGACGATTCTCATTCGTCGACTAAATGAGTAATTTATTTAACTTTTCATTTACNACAAA]

[+] EMBL CA755864             [TTTTTTTTTTTTTTTTTCGACGTGATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGTATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCTTTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCCTTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTCCTTCTTCTCTGGC TTC TTCTCT TCCTT GGCAGGTCCAACAGAAACGATGTCGATCTTGCCGATCTTCCTCAGCTTCTTCGCTATCTCGACGGTGTCCATGTCGCCAATGATGGTCATCTTGTTGTCCTTGAGGTCTGCAGCTATCGAATCAATACCGTAGATATCTGCGACGGCTTCGATCGCTTTCTGCTTCGTCTTTTCGTCAGTCATGGTTGGAACCTTGAGCACCACCTTCTGCTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCANCAGAGGGAAGGTTGGATCAGGGAGACAGATAGAAATGTGAGACGATTCTCATTCGTCGACTAAATGAGTAATTTATTTAACTTTTCATTTACNACAAA]
[-] EMBL D43210               [                                                                                                                                                                                                                                          cccaTCCTTC  AACTGGCTTTCTTTCNCTATCCTTGGGCAGGTCCAACAGAAACGATGTCGATCTTGCCGATCTTCCTCAGCTTCTTCGCTATCTCGACGGTGTCCATGTCGCCTATGATGGTCATCTTGTTGTCCTTGAGGTCTGCAGCTATCGAATCAATACCGTAGATATCTGCGACGGCTTCGATCGCTTTCTGCTTCGTCTTTTCGTCAGTCATGGTTGGAACCTTGAGCACCACCTT   CTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCAg                                                                                                  ]




>consensus_7143#0
TTTTTTTTTTTTTTTTTCGACGTGATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGT
ATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCT
TTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCC
TTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTC
CTTCTTCTCTGGCTTCTTCTCTTCCTTGGCAGGTCCAACAGAAACGATGTCGATCTTGCC
GATCTTCCTCAGCTTCTTCGCTATCTCGACGGTGTCCATGTCGCCAATGATGGTCATCTT
GTTGTCCTTGAGGTCTGCAGCTATCGAATCAATACCGTAGATATCTGCGACGGCTTCGAT
CGCTTTCTGCTTCGTCTTTTCGTCAGTCATGGTTGGAACCTTGAGCACCACCTTCTGCTG
AGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCANCAGAGGGAAGGTTGGATCAGGG
AGACAGATAGAAATGTGAGACGATTCTCATTCGTCGACTAAATGAGTAATTTATTTAACT
TTTCATTTACNACAAA

consensusID : consensus_7143#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [GTAAATTGTGCATGGCAGCTAGCTATAGCTAACACGATGAGAAAACAACGTTCGACGTGATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGTATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCTTTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCCTTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTCCTTCT]

[-] EMBL CA754859             [GTAAATTGTGCATGGCAGCTAGCTATAGCTAACACGATGAGAAAACAACGTTCGACGTGATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGTATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCTTTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCCTTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTCCTTCT]




>consensus_7143#1
GTAAATTGTGCATGGCAGCTAGCTATAGCTAACACGATGAGAAAACAACGTTCGACGTGA
TGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGTATACAGTGTACAAAATGATCATTTC
GAAACAGGGACAGCACTCAGGAGGGGAATCAAGCTTTTTCTTTTGCCGTTCGCGTGATGA
TATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCCTTTCTTCTCTTCCTTCTTCTCCTCT
TTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTCCTTCT

consensusID : consensus_7143#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [CTTCTTCTTTCCTGGGAGGGTCACAGAAAACGAGGTCGATCTGCCGATCTTCTCAGTTTCTCCGGATCGCGAGGGTCCATGTCGCCTATGATGGTCATCTGTGTCCTTGAGTCTGCAGCTATCGAATCAATACGTAGATATCTGCGAGGTTCGATCGCTTTCTGTTCGTCTGTCGTCAGTCATGGTGGAACCTTGAGCACCACCTTCTGTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCAGAGAGGGAAGTGGATCAGGCGGACGCGTGGT]

[-] EMBL BI800134             [CTTCTTCTTTCCTGGGAGGGTCACAGAAAACGAGGTCGATCTGCCGATCTTCTCAGTTTCTCCGGATCGCGAGGGTCCATGTCGCCTATGATGGTCATCTGTGTCCTTGAGTCTGCAGCTATCGAATCAATACGTAGATATCTGCGAGGTTCGATCGCTTTCTGTTCGTCTGTCGTCAGTCATGGTGGAACCTTGAGCACCACCTTCTGTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCAGAGAGGGAAGTGGATCAGGCGGACGCGTGGT]




>consensus_7143#2
CTTCTTCTTTCCTGGGAGGGTCACAGAAAACGAGGTCGATCTGCCGATCTTCTCAGTTTC
TCCGGATCGCGAGGGTCCATGTCGCCTATGATGGTCATCTGTGTCCTTGAGTCTGCAGCT
ATCGAATCAATACGTAGATATCTGCGAGGTTCGATCGCTTTCTGTTCGTCTGTCGTCAGT
CATGGTGGAACCTTGAGCACCACCTTCTGTGAGCCATCTGAAGAAGTGTTGAAACTGTGG
ATATATCAGAGAGGGAAGTGGATCAGGCGGACGCGTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7143#0      TTTTTTTTTTTTTTTTTCGACGTGATGTGCAAAAAGGTTTGATTTCTGTAGCTGTGGTGT 60
consensus_7143#2      ------------------------------------------------------------
consensus_7143#1      ------------------------------------------------------------
                                                                                  

consensus_7143#0      ATACAGTGTACAAAATGATCATTTCGAAACAGGGACAGCACTCAGGAGGGGAATCAAGCT 120
consensus_7143#2      ------------------------------------------------------------
consensus_7143#1      ------------------------------------------------------------
                                                                                  

consensus_7143#0      TTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGATGAGTTGCTTCATTTCTTGCC 180
consensus_7143#2      ------------------------------------------------------------
consensus_7143#1      ------------------------------------------------------------
                                                                                  

consensus_7143#0      TTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTCTCTTC 240
consensus_7143#2      ------------------------------------------------------------
consensus_7143#1      ------------------------------------------------------------
                                                                                  

consensus_7143#0      CTTCTTCTCTGGCTTCTTCTCTTCCTTGGCAG--GTCCAACAGAAACGATGTCGATCTTG 298
consensus_7143#2      --------------CTTCTTCTTTCCTGGGAG--GGTCACAGAAAACGAGGTCGATCT-G 43
consensus_7143#1      --------------GTAAATTGTGCATGGCAGCTAGCTATAGCTAACACGATGAGAA--A 44
                                         *  * * *** **      *     ***    *        

consensus_7143#0      CCGATCTTCCTCAGCTTCTTCGCTATCTCGACGGTGTCCATGTCGCCAATGATGGTCATC 358
consensus_7143#2      CCGATCTTC-TCAGTTTCTCCGG-ATCGCGAGGGT--CCATGTCGCCTATGATGGTCATC 99
consensus_7143#1      ACAACGTTCGACGTGATGTGCAAAAAGGTTTGATT---TCTGTAGC-TGTGGTG--TATA 98
                       * *  ***  *    * * *   *         *     *** **   ** **   ** 

consensus_7143#0      TTGTTGTCCTTGAGGTCTGCAGCTATCGAATCAATACCGTAGATATCTGCGACGGCTTCG 418
consensus_7143#2      TG--TGTCCTTGAG-TCTGCAGCTATCGAATCAATAC-GTAGATATCTGCGA--GGTTCG 153
consensus_7143#1      CA---GTGTACAAAATGATCA--TTTCGAAACAGGGA--CAGCACTCAGGAGGGGAATCA 151
                           **     *  *   **  * ***** **       **   ** *     *  ** 

consensus_7143#0      ATCGCTTTCTGCT-TCGTCTTTTCGTCAGTCATGGTTGGAACCTTGAGCACCACCTTCTG 477
consensus_7143#2      ATCGCTTTCTG-T-TCGTCTGT-CGTCAGTCATGGT-GGAACCTTGAGCACCACCTTCTG 209
consensus_7143#1      AGCTTTTTCTTTTGCCGTTCGCGTGATGATATTGGCTTCGAGAT-GAGTTGCTTCATTTC 210
                      * *  *****  *  ***      *    *  ***     *  * ***   *  * * * 

consensus_7143#0      CTGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCANCAGAGGGAAGGTTGGATCA 537
consensus_7143#2      -TGAGCCATCTGAAGAAGTGTTGAAACTGTGGATATATCAG-AGAGGGAAG--TGGATCA 265
consensus_7143#1      TTGCCTTTCTTCTCTTCCTTCTTCTCCTCTTTCTTCTCCTCTTTCTTCTCTTCTTTCTTC 270
                       **       *       *  *    ** *   *    *              *   *  

consensus_7143#0      GGGAGACAGATAGAAATGTGAGACGATTCTCATTCGTCGACTAAATGAGTAATTTATTTA 597
consensus_7143#2      GGCGGACGCGTGGT---------------------------------------------- 279
consensus_7143#1      TCTTCCTTCT-------------------------------------------------- 280
                                                                                  

consensus_7143#0      ACTTTTCATTTACNACAAA 616
consensus_7143#2      -------------------
consensus_7143#1      -------------------