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Oryza sativa
cluster # 7159 cluster # 7159       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7159#0 length = 1198 sequences # 3  
 consensus_7159#1 length = 285 sequences # 1  
consensusID : consensus_7159#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1198
fasta sequence 
                              [ACGGCGCCGCAGCTGCAGCCAGCCAGCAGCGAGAGCACCAAGAAGCAGCGGCCGCAAGAAACTTCCCTCCCCACGTCCACCTTCCCCTCCTCCTTTATTTCTATATTGTCTTCTTCTTCCTCCTCCCTTGCTTGTTCCTATCTCCTTCTACCTCTCTCTCTCCCTGGCTTTCTTGGTCTCCTGCTCTTGCGGGGCGTTTGTTGGTTTCTTCGCGGGTGAGGTGAGGCGGACATGAAGAAGGCTAAGGTGGTGTTGGCTCAGCCGGCGGCGAGGGCGCCGCCGTCGCCGCTGCTGCCGAGGGCGCCGGGGCACAGCCGT-GCGGCGGCGTTGGTGGCGGGGAAGAGGCGTACAGGGCGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAAAGAATCCGGCATTGCCGCCCACATTGCGGCAACCTGGTTGGTCTCATGGTGAAGAGTACCACACGGTTCGGGCTATCGGAAGCTCTAGCAAAGGCCCATCGGCGCACCGGAGGCTGAATGCTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACCCAATGGAGGGTGATTTTGCCGCCGGTCCTAGTGATGCGAAAATGGCGGCATTCTGGGATGTCCGGAACGCCGCCTCCTCCCGAGCTGGGAAGAGGAAGATATCATGGCAGGATCAGTTAGCTCTCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTGGGAAGAGGAACTGAATTTCGTTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTAAGAGGAATCGGTGGATGGGTGTAATGCTCCTGGCACTTGTTGAGATCGTAGTCGTGTATAATCAATCACTTGTCTGTTTTGTTAGCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAATTAATACAAATGCTGTCTGATGCCTTGTAGTAGGTGCTGCAGCTGCATATGTTAGCGG]

[+] EMBL AK066874             [ACGGCGCCGCAGCTGCAGCCAGCCAGCAGCGAGAGCACCAAGAAGCAGCGGCCGCAAGAAACTTCCCTCCCCACGTCCACCTTCCCCTCCTCCTTTATTTCTATATTGTCTTCTTCTTCCTCCTCCCTTGCTTGTTCCTATCTCCTTCTACCTCTCTCTCTCCCTGGCTTTCTTGGTCTCCTGCTCTTGCGGGGCGTTTGTTGGTTTCTTCGCGGGTGAGGTGAGGCGGACATGAAGAAGGCTAAGGTGGTGTTGGCTCAGCCGGCGGCGAGGGCGCCGCCGTCGCCGCTGCTGCCGAGGGCGCCGGGGCACAGCCGT GCGGCGGCGTTGGTGGCGGGGAAGAGGCGTACAGGGCGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAAAGAATCCGGCATTGCCGCCCACATTGCGGCAACCTGGTTGGTCTCATGGTGAAGAGTACCACACGGTTCGGGCTATCGGAAGCTCTAGCAAAGGCCCATCGGCGCACCGGAGGCTGAATGCTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACCCAATGGAGGGTGATTTTGCCGCCGGTCCTAGTGATGCGAAAATGGCGGCATTCTGGGATGTCCGGAACGCCGCCTCCTCCCGAGCTGGGAAGAGGAAGATATCATGGCAGGATCAGTTAGCTCTCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTGGGAAGAGGAACTGAATTTCGTTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTAAGAGGAATCGGTGGATGGGTGTAATGCTCCTGGCACTTGTTGAGATCGTAGTCGTGTATAATCAATCACTTGTCTGTTTTGTTAGCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATG                                                               ]
[+] EMBL AK061845             [                                                                                                                                      TTCCTATCTCCTTCTACCTCTCTCTCTCCCTGGCTTTCTTGGTCTCCTGCTCTTGCGGGGCGTTTGTTGGTTTCTTCGCGGGTGAGGTGAGGCGGACATGAAGAAGGCTAAGGTGGTGTTGGCTCAGCCGGCGGCGAGGGCGCCGCCGTCGCCGCTGCTGCCGAGGGCGCCGGGGCACAGCCGTGGCGGCGGCGTTGGTGGCGGGGAAGAGGCGTACAGGGCGAGGGCCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGGAAACTGAAGCAAAGAAGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAGTTTTTGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAAAGAATCCGGCATTGCCGCCCACATTGCGGCAACCTGGTTGGTCTCATGGTGAAGAGTACCACACGGTTCGGGCTATCGGAAGCTCTAGCAAAGGCCCATCGGCGCACCGGAGGCTGAATGCTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGAGTTCAGAAGAGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACCCAATGGAGGGTGATTTTGCCGCCGGTCCTAGTGATGCGAAAATGGCGGCATTCTGGGATGTCCGGAACGCCGCCTCCTCCCGAGCTGGGAAGAGGAAGATATCATGGCAGGATCAGTTAGCTCTCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTGGGAAGAGGAACTGAATTTCGTTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTAAGAGGAATCGGTGGATGGGTGTAATGCTCCTGGCACTTGTTGAGATCGTAGTCGTGTATAATCAATCACTTGTCTGTTTTGTTAGCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAATTAATACAAATGCTGTCTGATGCCTTGTAGTAGGTGCTGCAGCT              ]
[+] EMBL AU225185             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gccgctTGTTCCTCGAGTTGTAAAAGAATCCTTAAGAGGAATCGGTGGATGGGTGTAATGCTCCTGGCACTTGTTGAGATCGTAGTCGTGTATAATCAATCACTTGTCTGTTTTGTTAGCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAATTAATACAAATGCTGTCTGATGCCTTGTAGTAGGTGCTGCAGCTGCATATGTTAGCGG]




>consensus_7159#0
ACGGCGCCGCAGCTGCAGCCAGCCAGCAGCGAGAGCACCAAGAAGCAGCGGCCGCAAGAA
ACTTCCCTCCCCACGTCCACCTTCCCCTCCTCCTTTATTTCTATATTGTCTTCTTCTTCC
TCCTCCCTTGCTTGTTCCTATCTCCTTCTACCTCTCTCTCTCCCTGGCTTTCTTGGTCTC
CTGCTCTTGCGGGGCGTTTGTTGGTTTCTTCGCGGGTGAGGTGAGGCGGACATGAAGAAG
GCTAAGGTGGTGTTGGCTCAGCCGGCGGCGAGGGCGCCGCCGTCGCCGCTGCTGCCGAGG
GCGCCGGGGCACAGCCGTGCGGCGGCGTTGGTGGCGGGGAAGAGGCGTACAGGGCGAGGG
CCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGGAAACTGAAGCAAAGA
AGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAGTTTT
TGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAA
AGAATCCGGCATTGCCGCCCACATTGCGGCAACCTGGTTGGTCTCATGGTGAAGAGTACC
ACACGGTTCGGGCTATCGGAAGCTCTAGCAAAGGCCCATCGGCGCACCGGAGGCTGAATG
CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGAGTTCAGAAG
AGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACC
CAATGGAGGGTGATTTTGCCGCCGGTCCTAGTGATGCGAAAATGGCGGCATTCTGGGATG
TCCGGAACGCCGCCTCCTCCCGAGCTGGGAAGAGGAAGATATCATGGCAGGATCAGTTAG
CTCTCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTGGGAAGAGGAACTGAATTT
CGTTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTAAGAGGAATCGGTGGATGGGTGT
AATGCTCCTGGCACTTGTTGAGATCGTAGTCGTGTATAATCAATCACTTGTCTGTTTTGT
TAGCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAA
TTAATACAAATGCTGTCTGATGCCTTGTAGTAGGTGCTGCAGCTGCATATGTTAGCGG

consensusID : consensus_7159#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence 
                              [TGGCAGGATCAGTTAGCCCCCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTNGGAANAGGAACTGAATTNCGNTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTNAGAGGAATCGGTGGATGGGTGTAATGCNCCTGGCACTTGTTGAGANCGTAGTCGTGTATAANCAATCACTTGTCTGTTTTGTTANCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAATTAATACAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C97787               [TGGCAGGATCAGTTAGCCCCCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTNGGAANAGGAACTGAATTNCGNTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTNAGAGGAATCGGTGGATGGGTGTAATGCNCCTGGCACTTGTTGAGANCGTAGTCGTGTATAANCAATCACTTGTCTGTTTTGTTANCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAATTAATACAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7159#1
TGGCAGGATCAGTTAGCCCCCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTNGG
AANAGGAACTGAATTNCGNTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTNAGAGGA
ATCGGTGGATGGGTGTAATGCNCCTGGCACTTGTTGAGANCGTAGTCGTGTATAANCAAT
CACTTGTCTGTTTTGTTANCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTAT
TTGAGCAAATGAATAATTAATACAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7159#0      ACGGCGCCGCAGCTGCAGCCAGCCAGCAGCGAGAGCACCAAGAAGCAGCGGCCGCAAGAA 60
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      ACTTCCCTCCCCACGTCCACCTTCCCCTCCTCCTTTATTTCTATATTGTCTTCTTCTTCC 120
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      TCCTCCCTTGCTTGTTCCTATCTCCTTCTACCTCTCTCTCTCCCTGGCTTTCTTGGTCTC 180
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      CTGCTCTTGCGGGGCGTTTGTTGGTTTCTTCGCGGGTGAGGTGAGGCGGACATGAAGAAG 240
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      GCTAAGGTGGTGTTGGCTCAGCCGGCGGCGAGGGCGCCGCCGTCGCCGCTGCTGCCGAGG 300
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      GCGCCGGGGCACAGCCGTGCGGCGGCGTTGGTGGCGGGGAAGAGGCGTACAGGGCGAGGG 360
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      CCAAGTACAAGAATCTTCTCCAGGACTACAAGGAGCTCCTCGAGGAAACTGAAGCAAAGA 420
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      AGAAGAGATTACAGATGGAGAAGCTCAAGAAACAGAGGCTTTTGGCTGAAGTCAAGTTTT 480
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      TGCGGAAAAGGTACAAATCCATGTCCGAAAATCCATCCCAGACGTTTGTCTATAGAGTAA 540
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      AGAATCCGGCATTGCCGCCCACATTGCGGCAACCTGGTTGGTCTCATGGTGAAGAGTACC 600
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      ACACGGTTCGGGCTATCGGAAGCTCTAGCAAAGGCCCATCGGCGCACCGGAGGCTGAATG 660
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      CTGCTCCAAGAGCATCTCCGGTGATTGACCTCAACGAGGCCTGCGAGCCGAGTTCAGAAG 720
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      AGATGGAGGAGCTTCATGGTTACCAGGAACCTGTTAGGGTTGGCAGGGTCATGAGGTACC 780
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      CAATGGAGGGTGATTTTGCCGCCGGTCCTAGTGATGCGAAAATGGCGGCATTCTGGGATG 840
consensus_7159#1      ------------------------------------------------------------
                                                                                  

consensus_7159#0      TCCGGAACGCCGCCTCCTCCCGAGCTGGGAAGAGGAAGATATCATGGCAGGATCAGTTAG 900
consensus_7159#1      --------------------------------------------TGGCAGGATCAGTTAG 16
                                                                  ****************

consensus_7159#0      CTCTCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTGGGAAGAGGAACTGAATTT 960
consensus_7159#1      CCCCCAGAGTATAGGTTAATAATAACAGTGTTGAGATAGTTNGGAANAGGAACTGAATTN 76
                      * * ************************************* **** ************ 

consensus_7159#0      CGTTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTAAGAGGAATCGGTGGATGGGTGT 1020
consensus_7159#1      CGNTCATCCCTGTTCCTCGAGTTGTAAAAGAATCCTTNAGAGGAATCGGTGGATGGGTGT 136
                      ** ********************************** **********************

consensus_7159#0      AATGCTCCTGGCACTTGTTGAGATCGTAGTCGTGTATAATCAATCACTTGTCTGTTTTGT 1080
consensus_7159#1      AATGCNCCTGGCACTTGTTGAGANCGTAGTCGTGTATAANCAATCACTTGTCTGTTTTGT 196
                      ***** ***************** *************** ********************

consensus_7159#0      TAGCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAA 1140
consensus_7159#1      TANCGTGAATGCCATCTCAACAACTACTCTAGGGCTAATAGTATTTGAGCAAATGAATAA 256
                      ** *********************************************************

consensus_7159#0      TTAATACAAATGCTGTCTGATGCCTTGTAGTAGGTGCTGCAGCTGCATATGTTAGCGG 1198
consensus_7159#1      TTAATACAAAAAAAAAAAAAAAAAAAAAA----------------------------- 285
                      **********         *        *


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)