|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7160#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2447 fasta sequence
[GCGTCATCCTCACCAAGCGATCCTCCTCCCTCTCCACCCACTCCGGTGAGCTCGCTTCCTTCCTTCCTTCCTCCTCCCTCGCATCGCCTTCGCGTGGTGTGGTGTGGTGTGGGGGGGTCCGTTGGGCGATCGGGCGCGAGTGCGATCGATCGGATTCTTGCGGGTAAGCTCGGAGATTTGTCGGCAGCGGGGCTCGCCATTGCGGTCCATGCGAGCGGTAGGTTGGGGAATGTGGGGGGAGGGGGGCGGGCATTCCCTAGGCGCTTTCTTCTTTCCATCGGTCCCCAAGGGGGATTGGCCGTTAGTTCTTGGCATTTTTGCTAAGGTCAATGAAGCAAATATAATTGTTTCTGAGAGCATAGAGGAGCAAGAGTTCGTGATTTTTTGGTGGATTTTGTTCAGGTATTTTAGTGGCATAGATGTAAGTTTCTTCTGTTTCTAGTGTCCTCTACGGTGCCTATAGTAGTTTATATAAAAAATATTAGAGTAAATTTCACAAAAATACAGGTATTTTGACCAAATTATCACAAAACTACAACTATAGATTTAATGTGTTGTATCACAAAACTACAACTACAGATTTAGCATCAAATTTATCACAAAACTACAGTTTTAAGGTTAAGTATCACAAAAATGCATATTTAATATTGAAGTAATCACAAAACTACAACTTGGAGTTTAGATCCCTAGCACCATTGTTATATTGGAGCTATAAACATTATTGCTTTCTGACTAAATTGGTTCTAAACTTGTAGTCTTGTGGTAATTTAGTTAATAAACATGTAGTTTTGTGACACTTCATCATAAATGTGTAGTTTTGTGATACACCGAGTTAAATCTGTAGTTTTGTGATAATTTTATCATAGTATTATGTCAGATTGAAACATTTTTTCTTTTTGGGGGTGAGGGGGGGGGGGTGTTAATATATAGTTCACAAATATGATAGGGAGTCACTTTCTAGTTTCTACCATGTGGGTGATTCATTCATGAAGTTAGTTTACAAATGATATAGTTGTTTCTCTCTTGTCTTGTCCACTTCAACATTATTAGCCAACTGGCTTTTGTGGAATGTTTTGAACAAACAATTTGTACAGATGATTGGACTTATACTAGGAACATCATAGCATTTCTTACTTCGGTGTCTACTTGAGAAAAACAAGTAGGGTGCATCAGAATTTACAAATTTTAAGCGACTTGGCCTCACCTCAGGAATTGTTTGAGCAACTTGAGATTTGGTTCTGAAGTGAAATGAAACAAGCTGACTTTCTGAAATACTTTTGAAACCAAGCCTGCTCATATATTTTCTTGTTATAGATTTTGAGTTTGGGGACTTGAGCTCACAAATGGTCTCAAGATAGGTTTGGCTTACACAAGAGTTATAAATTGAGCTTCTGGCTCTACTAGAGAGCTGACTTGGTTTGAGTCAGCATATTCAGGTGAGCTGATCCAAATGTAGTCTGCCCTGGCTCATTTTATCTAAACTTGCTTCAACTACACCCCAAAGTGTTGATGGATGCTCATAGATGCCCAATGCTGCTTCTATGCTTTTTCTTAACTAAGTTTCTTGCCTAAATTTGAGATTGTCAGGCGAGGTTGCATTGCCAGGAGGGAAGGCTGAGGAAGGTGATGCTGATGATGCAGCAACAGCACTGAGAGAGGCAAAGGAGGAGATTGGGCTTGATCCTTCTTTGGTCACTGTTGTTGCCTCTTTAGAGCATTTCTTGTCAAAGCATCTTCTGGTGGTTGTTCCTATTGTTGGCATCCTCTCAGATATAGAAGCATTTAAGCCTGTTCTTAATGTCGATGAGGTAGATGACATTTTTGATGTACCGCTGGAGATGTTCCTCAAGGATGAAAATAGGACATCTGAGGAGCGCGAAAAGATGGGGCAGACATTCACAATTCATTACTTCAATTATGAGAAAGAGAACCAAAAGTACTTAATCTGGGGCCTGA-CTGCA-CGCATCTTAATTCATGCTGCTTCAGTTGTATACCA-GCGCCCA-CCAGACTTTCCCGAGCGAAGAGTACA-TTTCAACCTGCCAAAGTTCTGAAGGGGTCGTTGGCAGTGCCA-TGGATCAGCATATACTAAATACTGTTAACTTACTATGGAGACTCAATTATACCGATTGAAGAGCATGGCGG-AAAAAAAATCCCAAAAAAGGTTGCTGGAGAATATATATTTTCTATTCTTTGCACCATTCTTTACATAACACGCTGATGTTAACA-TTTGTTGATGCTGAGTTATCTGAGTAACCTCCATTTGCTCCCTGTTGATGTCACCAAACAGTTGCACTAATACAGTTGGGTTTTATATGTGAAGTATAAATCCAATTTAGTGTGTTGAGTGCGTTGTTCAGTCACTCATTAGGATCAGATGTTTGTGAAAACCTACCCAATTGCTGATACTGTTGATGCTCCATTGTCTCCCTTCCTTCTGAAAAAAAAAA]
[+] EMBL AK101135 [GCGTCATCCTCACCAAGCGATCCTCCTCCCTCTCCACCCACTCCGGTGAGCTCGCTTCCTTCCTTCCTTCCTCCTCCCTCGCATCGCCTTCGCGTGGTGTGGTGTGGTGTGGGGGGGTCCGTTGGGCGATCGGGCGCGAGTGCGATCGATCGGATTCTTGCGGGTAAGCTCGGAGATTTGTCGGCAGCGGGGCTCGCCATTGCGGTCCATGCGAGCGGTAGGTTGGGGAATGTGGGGGGAGGGGGGCGGGCATTCCCTAGGCGCTTTCTTCTTTCCATCGGTCCCCAAGGGGGATTGGCCGTTAGTTCTTGGCATTTTTGCTAAGGTCAATGAAGCAAATATAATTGTTTCTGAGAGCATAGAGGAGCAAGAGTTCGTGATTTTTTGGTGGATTTTGTTCAGGTATTTTAGTGGCATAGATGTAAGTTTCTTCTGTTTCTAGTGTCCTCTACGGTGCCTATAGTAGTTTATATAAAAAATATTAGAGTAAATTTCACAAAAATACAGGTATTTTGACCAAATTATCACAAAACTACAACTATAGATTTAATGTGTTGTATCACAAAACTACAACTACAGATTTAGCATCAAATTTATCACAAAACTACAGTTTTAAGGTTAAGTATCACAAAAATGCATATTTAATATTGAAGTAATCACAAAACTACAACTTGGAGTTTAGATCCCTAGCACCATTGTTATATTGGAGCTATAAACATTATTGCTTTCTGACTAAATTGGTTCTAAACTTGTAGTCTTGTGGTAATTTAGTTAATAAACATGTAGTTTTGTGACACTTCATCATAAATGTGTAGTTTTGTGATACACCGAGTTAAATCTGTAGTTTTGTGATAATTTTATCATAGTATTATGTCAGATTGAAACATTTTTTCTTTTTGGGGGTGAGGGGGGGGGGGTGTTAATATATAGTTCACAAATATGATAGGGAGTCACTTTCTAGTTTCTACCATGTGGGTGATTCATTCATGAAGTTAGTTTACAAATGATATAGTTGTTTCTCTCTTGTCTTGTCCACTTCAACATTATTAGCCAACTGGCTTTTGTGGAATGTTTTGAACAAACAATTTGTACAGATGATTGGACTTATACTAGGAACATCATAGCATTTCTTACTTCGGTGTCTACTTGAGAAAAACAAGTAGGGTGCATCAGAATTTACAAATTTTAAGCGACTTGGCCTCACCTCAGGAATTGTTTGAGCAACTTGAGATTTGGTTCTGAAGTGAAATGAAACAAGCTGACTTTCTGAAATACTTTTGAAACCAAGCCTGCTCATATATTTTCTTGTTATAGATTTTGAGTTTGGGGACTTGAGCTCACAAATGGTCTCAAGATAGGTTTGGCTTACACAAGAGTTATAAATTGAGCTTCTGGCTCTACTAGAGAGCTGACTTGGTTTGAGTCAGCATATTCAGGTGAGCTGATCCAAATGTAGTCTGCCCTGGCTCATTTTATCTAAACTTGCTTCAACTACACCCCAAAGTGTTGATGGATGCTCATAGATGCCCAATGCTGCTTCTATGCTTTTTCTTAACTAAGTTTCTTGCCTAAATTTGAGATTGTCAGGCGAGGTTGCATTGCCAGGAGGGAAGGCTGAGGAAGGTGATGCTGATGATGCAGCAACAGCACTGAGAGAGGCAAAGGAGGAGATTGGGCTTGATCCTTCTTTGGTCACTGTTGTTGCCTCTTTAGAGCATTTCTTGTCAAAGCATCTTCTGGTGGTTGTTCCTATTGTTGGCATCCTCTCAGATATAGAAGCATTTAAGCCTGTTCTTAATGTCGATGAGGTAGATGACATTTTTGATGTACCGCTGGAGATGTTCCTCAAGGATGAAAATAGGACATCTGAGGAGCGCGAAAAGATGGGGCAGACATTCACAATTCATTACTTCAATTATGAGAAAGAGAACCAAAAGTACTTAATCTGGGGCCTGA CTGCA CGCATCTTAATTCATGCTGCTTCAGTTGTATACCA GCGCCCA CCAGACTTTCCCGAGCGAAGAGTACA TTTCAACCTGCCAAAGTTCTGAAGGGGTCGTTGGCAGTGCCA TGGATCAGCATATACTAAATACTGTTAACTTACTATGGAGACTCAATTATACCGATTGAAGAGCATGGCGG AAAAAAAATCCCAAAAAAGGTTGCTGGAGAATATATATTTTCTATTCTTTGCACCATTCTTTACATAACACGCTGATGTTAACA TTTGTTGATGCTGAGTTATCTGAGTAACCTCCATTTGCTCCCTGTTGATGTCACCAAACAGTTGCACTAATACAGTTGGGTTTTATATGTGA ]
[+] EMBL BM038364 [ AATCTGGGCCCTGACCTGCACCGCATCTTAATTCAT CTGCTTCACTTGTATACCACGCGCCCACCCAGACTTTCCCGAGCGAAGAGTACACTTTCAACCTGCCCAAGTTCTGAAGGGTTCCTT GCAGTGCCACTGGATCAGCATATACTAAATACTGTTAACTTACTATGGAGACTCAATTATACCGATTGAAGAGCATAGCGGAAAAAAAAATCCCCAAAAAGGTTGCTGGAGAATATATATTTTCTATTCTTTGCACCNTTCTTTACACAACACGCTGATGTTAACACTTTGTTGATGCTGAGTTATCTGAGTAACCCCCCTTTGCTCCCTGTTGATGTCACCCAACCGTTGCACTAATACCGTTGGGTTTTATATGTGAAGTATAAATCCAATTTAGTGTGTTGAGTGCGTTGTTCAGTCACTCATTAGGATCAGATGTTTGTGAAAACCTACCCAATTGCTGATACTGTTGATGCTCCATTGTCTCCCTTCCTTCTGAAAAAAAAAA]
consensusID : consensus_7160#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 405 fasta sequence
[GCGTCATCCTCACCAAGCGATCCTCCTCCCTCTCCACCCACTCCGGCGAGGTTGCATTGCCAGGAGGGAAGGCTGAGGAAGGTGATGCTGATGATGCAGCAACAGCACTGAGAGAGGCAAAGGAGGAGATTGGGCTTGATCCTTCTTTGGTCACTGTTGTTGCCTCTTTAGAGCATTTCTTGTCAAAGCATCTTCTGGTGGTTGTTCCTATTGTT-GGCATCCTCTCAGATAT-AGAAGCATTTAAGCCTGTTCTTAATGTCGATGAGGTAGATGACATTTTTGATGTACCGCTGGAGATGTTCCTCAAGGATGAAAATACGACATCTGAGGAGCGCGAAAAGATGGGGCAGACATTCACAATTCATTACTTCAATTATGAGAAAGAGAACCAAAAGTACTTAATCT]
[+] EMBL CB000603 [GCGTCATCCTCACCAAGCGATCCTCCTCCCTCTCCACCCACTCCGGCGAGGTTGCATTGCCAGGAGGGAAGGCTGAGGAAGGTGATGCTGATGATGCAGCAACAGCACTGAGAGAGGCAAAGGAGGAGATTGGGCTTGATCCTTCTTTGGTCACTGTTGTTGCCTCTTTAGAGCATTTCTTGTCAAAGCATCTTCTGGTGGTTGTTCCTATTGTT GGCATCCTCTCAGATAT AGAAGCATTTAAGCCTGTTCTTAATGTCGATGAGGTAGATGACATTTTTGATGTACCGCTGGAGATGTTCCTCAAGGATGAAAATACGACATCTGAGGAGCGCGAAAAGATGGGGCAGACATTCACAATTCATTACTTCAATTATGAGAAAGAGAACCAAAAGTACTTAATCT]
[+] EMBL C72661 [GCGTCATCCTCACCAAGCGATCCTCCTCCCTCTCCACCCACTCCGGCGANGTTGCATTGCCAGGAGGGAAGGCTGAGGAAGGTGATGCTGATGATGCAGCAACAGCACTGAGAGAGGCAAAGGAGGAGATTGGGCTTGATCCTTCTTTGGTCACTGTTGTTGCCTCTTTANAGCATTTCTTGTCAAAGCATCTTCTGGTGGTTGTTCCTAATGTTGGGNATCCTCTCAGATATNAGAAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7160#0 GCGTCATCCTCACCAAGCGATCCTCCTCCCTCTCCACCCACTCCGGTGAGCTCGCTTCCT 60
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 TCCTTCCTTCCTCCTCCCTCGCATCGCCTTCGCGTGGTGTGGTGTGGTGTGGGGGGGTCC 120
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GTTGGGCGATCGGGCGCGAGTGCGATCGATCGGATTCTTGCGGGTAAGCTCGGAGATTTG 180
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 TCGGCAGCGGGGCTCGCCATTGCGGTCCATGCGAGCGGTAGGTTGGGGAATGTGGGGGGA 240
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GGGGGGCGGGCATTCCCTAGGCGCTTTCTTCTTTCCATCGGTCCCCAAGGGGGATTGGCC 300
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GTTAGTTCTTGGCATTTTTGCTAAGGTCAATGAAGCAAATATAATTGTTTCTGAGAGCAT 360
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 AGAGGAGCAAGAGTTCGTGATTTTTTGGTGGATTTTGTTCAGGTATTTTAGTGGCATAGA 420
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 TGTAAGTTTCTTCTGTTTCTAGTGTCCTCTACGGTGCCTATAGTAGTTTATATAAAAAAT 480
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 ATTAGAGTAAATTTCACAAAAATACAGGTATTTTGACCAAATTATCACAAAACTACAACT 540
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 ATAGATTTAATGTGTTGTATCACAAAACTACAACTACAGATTTAGCATCAAATTTATCAC 600
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 AAAACTACAGTTTTAAGGTTAAGTATCACAAAAATGCATATTTAATATTGAAGTAATCAC 660
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 AAAACTACAACTTGGAGTTTAGATCCCTAGCACCATTGTTATATTGGAGCTATAAACATT 720
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 ATTGCTTTCTGACTAAATTGGTTCTAAACTTGTAGTCTTGTGGTAATTTAGTTAATAAAC 780
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 ATGTAGTTTTGTGACACTTCATCATAAATGTGTAGTTTTGTGATACACCGAGTTAAATCT 840
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GTAGTTTTGTGATAATTTTATCATAGTATTATGTCAGATTGAAACATTTTTTCTTTTTGG 900
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GGGTGAGGGGGGGGGGGTGTTAATATATAGTTCACAAATATGATAGGGAGTCACTTTCTA 960
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GTTTCTACCATGTGGGTGATTCATTCATGAAGTTAGTTTACAAATGATATAGTTGTTTCT 1020
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 CTCTTGTCTTGTCCACTTCAACATTATTAGCCAACTGGCTTTTGTGGAATGTTTTGAACA 1080
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 AACAATTTGTACAGATGATTGGACTTATACTAGGAACATCATAGCATTTCTTACTTCGGT 1140
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GTCTACTTGAGAAAAACAAGTAGGGTGCATCAGAATTTACAAATTTTAAGCGACTTGGCC 1200
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 TCACCTCAGGAATTGTTTGAGCAACTTGAGATTTGGTTCTGAAGTGAAATGAAACAAGCT 1260
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GACTTTCTGAAATACTTTTGAAACCAAGCCTGCTCATATATTTTCTTGTTATAGATTTTG 1320
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 AGTTTGGGGACTTGAGCTCACAAATGGTCTCAAGATAGGTTTGGCTTACACAAGAGTTAT 1380
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 AAATTGAGCTTCTGGCTCTACTAGAGAGCTGACTTGGTTTGAGTCAGCATATTCAGGTGA 1440
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GCTGATCCAAATGTAGTCTGCCCTGGCTCATTTTATCTAAACTTGCTTCAACTACACCCC 1500
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 AAAGTGTTGATGGATGCTCATAGATGCCCAATGCTGCTTCTATGCTTTTTCTTAACTAAG 1560
consensus_7160#1 -------------------------------------------GCGTCATCCTCACCAAG 17
** * ** * ** ***
consensus_7160#0 TTTCTTGCCTAAATTTGAGATTG-TCAGGCGAGGTTGCATTGCCAGGAGGGAAGGCTGAG 1619
consensus_7160#1 CGATCCTCCTCCCTCTCCACCCACTCCGGCGAGGTTGCATTGCCAGGAGGGAAGGCTGAG 77
*** * * ** *********************************
consensus_7160#0 GAAGGTGATGCTGATGATGCAGCAACAGCACTGAGAGAGGCAAAGGAGGAGATTGGGCTT 1679
consensus_7160#1 GAAGGTGATGCTGATGATGCAGCAACAGCACTGAGAGAGGCAAAGGAGGAGATTGGGCTT 137
************************************************************
consensus_7160#0 GATCCTTCTTTGGTCACTGTTGTTGCCTCTTTAGAGCATTTCTTGTCAAAGCATCTTCTG 1739
consensus_7160#1 GATCCTTCTTTGGTCACTGTTGTTGCCTCTTTAGAGCATTTCTTGTCAAAGCATCTTCTG 197
************************************************************
consensus_7160#0 GTGGTTGTTCCTATTGTTGGCATCCTCTCAGATATAGAAGCATTTAAGCCTGTTCTTAAT 1799
consensus_7160#1 GTGGTTGTTCCTATTGTTGGCATCCTCTCAGATATAGAAGCATTTAAGCCTGTTCTTAAT 257
************************************************************
consensus_7160#0 GTCGATGAGGTAGATGACATTTTTGATGTACCGCTGGAGATGTTCCTCAAGGATGAAAAT 1859
consensus_7160#1 GTCGATGAGGTAGATGACATTTTTGATGTACCGCTGGAGATGTTCCTCAAGGATGAAAAT 317
************************************************************
consensus_7160#0 AGGACATCTGAGGAGCGCGAAAAGATGGGGCAGACATTCACAATTCATTACTTCAATTAT 1919
consensus_7160#1 ACGACATCTGAGGAGCGCGAAAAGATGGGGCAGACATTCACAATTCATTACTTCAATTAT 377
* **********************************************************
consensus_7160#0 GAGAAAGAGAACCAAAAGTACTTAATCTGGGGCCTGACTGCACGCATCTTAATTCATGCT 1979
consensus_7160#1 GAGAAAGAGAACCAAAAGTACTTAATCT-------------------------------- 405
****************************
consensus_7160#0 GCTTCAGTTGTATACCAGCGCCCACCAGACTTTCCCGAGCGAAGAGTACATTTCAACCTG 2039
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 CCAAAGTTCTGAAGGGGTCGTTGGCAGTGCCATGGATCAGCATATACTAAATACTGTTAA 2099
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 CTTACTATGGAGACTCAATTATACCGATTGAAGAGCATGGCGGAAAAAAAATCCCAAAAA 2159
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 AGGTTGCTGGAGAATATATATTTTCTATTCTTTGCACCATTCTTTACATAACACGCTGAT 2219
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GTTAACATTTGTTGATGCTGAGTTATCTGAGTAACCTCCATTTGCTCCCTGTTGATGTCA 2279
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 CCAAACAGTTGCACTAATACAGTTGGGTTTTATATGTGAAGTATAAATCCAATTTAGTGT 2339
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 GTTGAGTGCGTTGTTCAGTCACTCATTAGGATCAGATGTTTGTGAAAACCTACCCAATTG 2399
consensus_7160#1 ------------------------------------------------------------
consensus_7160#0 CTGATACTGTTGATGCTCCATTGTCTCCCTTCCTTCTGAAAAAAAAAA 2447
consensus_7160#1 ------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||