These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1648 fasta sequence [TTCATAATGAGATTTGTGAGAGGATGAGTACCAACATTCAACAACAATGGCATCATCATCCTTGGAAGCCTACCTCGTACGGCTGTCCGGCGCCGACGCCCCGGACGGACAAGTACACCACCCACCCGGACACGAAGCACCACCGCACCACCTGCCCCGCCACCGCCACCGCCGCCTCACTTCGCCGGCGGAAGCCGTCCACCGTGCACATCACCACCCCGTTGAAGGTCTCCGCGCCGGCGTCCACGTGCCTCTCGACGCGCCGCGCGCGCGTCCCGAACCGGCCGTCCATGATCCGCCTCGCCATCTCCTCCCGCCGCACCGCCCAGTCCGCGCCCTGCCGCCCGAGGTGGTAGCTCACGTGGACGGGCGGCGGCGGCGGCGGCGTCGTGCGCGGTGCGTCCCTCGCCGGGCTGTCCCACTCGGCGACCACGTAGAGGACGTGCTCCGGCAGCGCCGCCACCGATGCCGGCTCGTCGCCGTATCCGGCGGCCATCCACTCCGGCTGCTCGTACCGGGACGGCTGGCTGCAGTAGTGCGCGTCCCACGCTGGGAGGTGGTCGCCGCCGCCGTCGTCCTGCGTCATGGCCTGCAGGCGGTGGAAGCTCCCGAAGGCGGCGGCGGAGGCGAAGCGGAAGTGCGGCGGCAGCGCGTCCATGGAGGACAGAGCGAGCGCCATGACGTCAGCGCTCTCAGAGAGGTCGAGCTCCACGAACAGCTCCAGCTTCTCGCCGGTGCCGCCGCCGTCCGCGTACAGGAACACGACGTGCGCGCGCGGGCGGCGCCAAGGTGATGTGAGGTCCGGGAACGCGAACGCGTGCGCCGTGGCGCCCGGCGACGCCGGCGGCTTGACGGAGAAGCTCACCGCTCTCCGCGCGAGCAGCGACGCCGCGACCGGCTGGAACGGCACAAACCGCTTGGCGCGGCCGCCGCTCTCGACGAGCTTCACGAAGTCGCCGACGCCGTCCGCCAGCCGCTCGAACCGCCGCACGGTGCCGCCGCTCAGCCGCTGCTCGTCTCCGCCGCCGAAGGCGAAG-AGCTTCTTGCCGGCGGCCCGAGCAACGCGCCTCGGAAACCAAAGGCGGCGCGCATCATCATCGGCGACACACAGGCGCCGCCGCCGCCGCCGCCTGTACTCCCGCGGGACGCACTCGCCCTCGTCGGCGGCGCGCTTGAGCTTGTCGCGCCACCGCACGAGCGGGCGGTTGGTGATGTGCCAGCCGTCGGCCTCCTCGACGGCGGCCTGAATCCTGAGCAGCGCCACCTCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCACCGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCGCCGAGCCGACGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTGGTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGATAAACAATGTATTCATGAGTAGTGTGAAACTGAAATCTTACATGTTTTGGATTATTATTAATTATATTTGATTTGCATGGGGTTAAGTTTAACCCTTTCATTGTCGATGGATGACCTAAAGATCCAAGAAATAATATTCTTATGTATT] [+] EMBL AK070697 [TTCATAATGAGATTTGTGAGAGGATGAGTACCAACATTCAACAACAATGGCATCATCATCCTTGGAAGCCTACCTCGTACGGCTGTCCGGCGCCGACGCCCCGGACGGACAAGTACACCACCCACCCGGACACGAAGCACCACCGCACCACCTGCCCCGCCACCGCCACCGCCGCCTCACTTCGCCGGCGGAAGCCGTCCACCGTGCACATCACCACCCCGTTGAAGGTCTCCGCGCCGGCGTCCACGTGCCTCTCGACGCGCCGCGCGCGCGTCCCGAACCGGCCGTCCATGATCCGCCTCGCCATCTCCTCCCGCCGCACCGCCCAGTCCGCGCCCTGCCGCCCGAGGTGGTAGCTCACGTGGACGGGCGGCGGCGGCGGCGGCGTCGTGCGCGGTGCGTCCCTCGCCGGGCTGTCCCACTCGGCGACCACGTAGAGGACGTGCTCCGGCAGCGCCGCCACCGATGCCGGCTCGTCGCCGTATCCGGCGGCCATCCACTCCGGCTGCTCGTACCGGGACGGCTGGCTGCAGTAGTGCGCGTCCCACGCTGGGAGGTGGTCGCCGCCGCCGTCGTCCTGCGTCATGGCCTGCAGGCGGTGGAAGCTCCCGAAGGCGGCGGCGGAGGCGAAGCGGAAGTGCGGCGGCAGCGCGTCCATGGAGGACAGAGCGAGCGCCATGACGTCAGCGCTCTCAGAGAGGTCGAGCTCCACGAACAGCTCCAGCTTCTCGCCGGTGCCGCCGCCGTCCGCGTACAGGAACACGACGTGCGCGCGCGGGCGGCGCCAAGGTGATGTGAGGTCCGGGAACGCGAACGCGTGCGCCGTGGCGCCCGGCGACGCCGGCGGCTTGACGGAGAAGCTCACCGCTCTCCGCGCGAGCAGCGACGCCGCGACCGGCTGGAACGGCACAAACCGCTTGGCGCGGCCGCCGCTCTCGACGAGCTTCACGAAGTCGCCGACGCCGTCCGCCAGCCGCTCGAACCGCCGCACGGTGCCGCCGCTCAGCCGCTGCTCGTCTCCGCCGCCGAAGGCGAAG AGCTTCTTGCCGGCGGCCCGAGCAACGCGCCTCGGAAACCAAAGGCGGCGCGCATCATCATCGGCGACACACAGGCGCCGCCGCCGCCGCCGCCTGTACTCCCGCGGGACGCACTCGCCCTCGTCGGCGGCGCGCTTGAGCTTGTCGCGCCACCGCACGAGCGGGCGGTTGGTGATGTGCCAGCCGTCGGCCTCCTCGACGGCGGCCTGAATCCTGAGCAGCGCCACCTCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCACCGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCGCCGAGCCGACGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTGGTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGATAAACAATGTATTCATGAGTAGTGTGAAACTGAAATCTTACATGTTTTGGATTATTATTAATTATATTTGATTTGCATGGGGTTAAGTTTAACCCTTTCATTGTCGATGGATGACCTAAAGATCCAAGAAATAATATTCTTATGTATT] [+] EMBL BI809746 [ ACCGGGACGGCTGGCT CAGTAGTGCGCGTCCCACGCTGGGAGGTGGT TCC CC CCCTCGTCCTGCGTCATGGCCTGCAGGCGGTGGAAGCTCCCGAA GC GCGGCGGAGGCGAA CGGAAGT C GC GCAGCGCGTCCATGGAGGACAGAGCGAGCGCCATGACGTCAGCGCTCTCAGAGAGGTCGAGCTCCACGAACAGCTCCAGCTTCTCGCCGGTTCC CCCCCCTCCGCGTACAGGGACACGACGTGCGCGC C GGCGGCGCCACGGTGATGTGAGGTCCGGGAACGCGAACGCGTGC CCGTGGCGCCCGGCGACGCC GCGGCTTGACGGAGAAGCTCACCGCTCTCCGCGCGAGCAGCGACGCCGCGACCGGCTGGAACGGCACGAA ] [+] EMBL AU162208 [ TCTCGACGAGCTTCACGAAGTCGCCGACGCCGTCCGCCAGCCGCTCGAACCGCCGCACGGTGCCGCCGCTCAGCCGCTGCTCGTCTCCGCCGCCGAAGG AAAGNAGCTTCTTGCCGGCGGCCCGAGCAACGCGCCTCGGAAACCAAAGGCGGCGCGCATCATCATCGGCGACACACAGGCGCCGCCGCCGCCGCCGCCTGTACTCCCGCAGGACGCACTCGCCCTCGTCGGCGGCGCGCTTGAGCTTGTCGCGCCACCGCACGAGCGGGCGGTTGGTGAT ] consensusID : consensus_7181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [CAACCNCACGATCGGCGGTGGTGATGTGCCAGCCGTCGGCTTCTTCGACGGCGGCNTGAATCCTGAGCAGCGCCACTCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCACCGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCNCCGAGCCGACGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTGGTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGATAAACAATGTATTCATGAGTAATGTGAAACTGAAATCTTACATGTTTTGGATTATTATTAATTATATTTGATTTGCATGCGGTTAAGTTTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99116 [CAACCNCACGATCGGCGGTGGTGATGTGCCAGCCGTCGGCTTCTTCGACGGCGGCNTGAATCCTGAGCAGCGCCACTCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCACCGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCNCCGAGCCGACGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTGGTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGATAAACAATGTATTCATGAGTAATGTGAAACTGAAATCTTACATGTTTTGGATTATTATTAATTATATTTGATTTGCATGCGGTTAAGTTTAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7181#0 TTCATAATGAGATTTGTGAGAGGATGAGTACCAACATTCAACAACAATGGCATCATCATC 60 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 CTTGGAAGCCTACCTCGTACGGCTGTCCGGCGCCGACGCCCCGGACGGACAAGTACACCA 120 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 CCCACCCGGACACGAAGCACCACCGCACCACCTGCCCCGCCACCGCCACCGCCGCCTCAC 180 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 TTCGCCGGCGGAAGCCGTCCACCGTGCACATCACCACCCCGTTGAAGGTCTCCGCGCCGG 240 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 CGTCCACGTGCCTCTCGACGCGCCGCGCGCGCGTCCCGAACCGGCCGTCCATGATCCGCC 300 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 TCGCCATCTCCTCCCGCCGCACCGCCCAGTCCGCGCCCTGCCGCCCGAGGTGGTAGCTCA 360 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 CGTGGACGGGCGGCGGCGGCGGCGGCGTCGTGCGCGGTGCGTCCCTCGCCGGGCTGTCCC 420 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 ACTCGGCGACCACGTAGAGGACGTGCTCCGGCAGCGCCGCCACCGATGCCGGCTCGTCGC 480 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 CGTATCCGGCGGCCATCCACTCCGGCTGCTCGTACCGGGACGGCTGGCTGCAGTAGTGCG 540 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 CGTCCCACGCTGGGAGGTGGTCGCCGCCGCCGTCGTCCTGCGTCATGGCCTGCAGGCGGT 600 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 GGAAGCTCCCGAAGGCGGCGGCGGAGGCGAAGCGGAAGTGCGGCGGCAGCGCGTCCATGG 660 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 AGGACAGAGCGAGCGCCATGACGTCAGCGCTCTCAGAGAGGTCGAGCTCCACGAACAGCT 720 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 CCAGCTTCTCGCCGGTGCCGCCGCCGTCCGCGTACAGGAACACGACGTGCGCGCGCGGGC 780 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 GGCGCCAAGGTGATGTGAGGTCCGGGAACGCGAACGCGTGCGCCGTGGCGCCCGGCGACG 840 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 CCGGCGGCTTGACGGAGAAGCTCACCGCTCTCCGCGCGAGCAGCGACGCCGCGACCGGCT 900 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 GGAACGGCACAAACCGCTTGGCGCGGCCGCCGCTCTCGACGAGCTTCACGAAGTCGCCGA 960 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 CGCCGTCCGCCAGCCGCTCGAACCGCCGCACGGTGCCGCCGCTCAGCCGCTGCTCGTCTC 1020 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 CGCCGCCGAAGGCGAAGAGCTTCTTGCCGGCGGCCCGAGCAACGCGCCTCGGAAACCAAA 1080 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 GGCGGCGCGCATCATCATCGGCGACACACAGGCGCCGCCGCCGCCGCCGCCTGTACTCCC 1140 consensus_7181#1 ------------------------------------------------------------ consensus_7181#0 GCGGGACGCACTCGCCCTCGTCGGCGGCGCGCTTGAGCTTGTCGCGCCACCGCACGAGCG 1200 consensus_7181#1 ----------------------------------------------CAACCNCACGATCG 14 * *** ***** ** consensus_7181#0 GGCGGTTGGTGATGTGCCAGCCGTCGGCCTCCTCGACGGCGGCCTGAATCCTGAGCAGCG 1260 consensus_7181#1 G-CGGT-GGTGATGTGCCAGCCGTCGGCTTCTTCGACGGCGGCNTGAATCCTGAGCAGCG 72 * **** ********************* ** *********** **************** consensus_7181#0 CCACCTCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCAC 1320 consensus_7181#1 CCAC-TCCATCCTCTCCTCGTCATGCTCGGCTCCATCGCCGGCGGCCACCTCCTCCTCAC 131 **** ******************************************************* consensus_7181#0 CGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCGCCGAGCCGA 1380 consensus_7181#1 CGCGGCTGATGAGGTACGAGCATATCCGGCCGACGGCCTCGCCGACGACCNCCGAGCCGA 191 ************************************************** ********* consensus_7181#0 CGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTG 1440 consensus_7181#1 CGATCTCCACCACCGACGGTCGCTGCATATTCTTCGCTTACAAGTACTCCAACTATGGTG 251 ************************************************************ consensus_7181#0 GTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGA 1500 consensus_7181#1 GTCTCTACGCACATGGTCATGTCAATATTCCAAAAGTTTTGACAAAATTACACCGAAAGA 311 ************************************************************ consensus_7181#0 TAAACAATGTATTCATGAGTAGTGTGAAACTGAAATCTTACATGTTTTGGATTATTATTA 1560 consensus_7181#1 TAAACAATGTATTCATGAGTAATGTGAAACTGAAATCTTACATGTTTTGGATTATTATTA 371 ********************* ************************************** consensus_7181#0 ATTATATTTGATTTGCATGGGGTTAAGTTTAACCCTTTCATTGTCGATGGATGACCTAAA 1620 consensus_7181#1 ATTATATTTGATTTGCATGCGGTTAAGTTTAAAAAAAAAAAAAAAAAAAAAA-------- 423 ******************* ************ * * * consensus_7181#0 GATCCAAGAAATAATATTCTTATGTATT 1648 consensus_7181#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||