These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1946 fasta sequence [GAGGTGACGAGGTGTAATTAAGATGAAGATTACAAGCACGGCGATGCTGGCGCCGGTGTACGGCACGCCGCACCCGCTCGCCGGCGCGGAGGTCCAGCTCACCGTGTTCGACCGGGCGGCGTTCGACCTGTACGTACCCAGCGTGCTCGCGTACCGGGCGCCGGCGCCGTCGAACGAGGCGATCAAGGAGGGCCTCCTCAGGGCCGTCGCGGCGTACCCTCACCTCGCCGGCCGCCTCGCCGTCGACCACCACGGCCGCCGCTTCCTCCACGTGAACGACCAGGGCGTGCTCGTCGTCGAGGCCACCGTCGACGGCGCCGACCTAGACGACGTGCTCGCCAACAGCGGCCGCGCCATGGCCACCGACGTCGCCGACCTCTACCCCGCGTTGCCGGAGGACAACGTCGGCGCCGCGCTGCTGCAGGTGAAGCTCGTCCGGTACAGGTGCGGCGGCCTCGTCGTCGGCAGCATCTGCCACCACCACACCGCCGACGGCCACTCCATGAGCGCCTTCTTCACCGCGTGGGCGACCGCGGTGCGCGAGGGGGAGGGCTTCACCGCGCCGACGCCTTTCCTCGACCGCGCCGCCACGGCCGTGCCCCGCACCCCGCCGGTGCCGGCGTTCGACCACCGTTCCATCGAGTTCGACGGAGGAGAAGCCGCCGCCGCCGGTGGCGGCAGGTCGTCCTACGCCGCCGTGTCCCTGGACAAGATCAAGGACCTGACCGTGCACTTCACGGCGGAGTTCGTCGGCGAGCTCAAGGCCCGCGCCGGCGGCCGGTGCAGCACGTTCCAGTGCCTGCTCGCGCACGTGTGGAAGAAGATCACGGCGGCGAGGGACCTGAGCCCGGAGGAGTTCACGCAGGTGAGGGTGGCGGTGAACTGCCGGGGCAGAGCCAACCCGCCCGTGCCCATGGACTTCTTCGGCAACATGGTGCTCTGGGCGTTCCCGAGGATGCGGGCGCGCGAGCTCCTCCGCGCCACCTACGGCGCCGTCGTGGGCGCCATCCGCGACGCCGTGGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGCGGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTGCCCAGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCACCGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGTCCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGTCGAGGCGTTCGAGCGCATCATCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCCGTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTGCCCCAATTTAAGTGTAGTCGTGGTTTTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAAAAAATAGTTTCACATAAAGTAATATTCATGTTTTATCATATAATAACAATAAAAATACTAATCATAAAAGTTTTTACAAATAAGACAGATGGTAAATGTTGAACACAACCAATGCAAAACTGCAGTCTTCTGGGATGGAAGTAGTATAAAACTATGGCGTGCGGGTGGCAAACTGATGTGATTAGCCACTTGTCTTTCCACGATGCTGTTTTCTCGAGCTTGTGTTGATGTTAAGCGTGATTAGCCACAGTCTAATGTGCAAATTTGTTCTGTAAATATATATAAGATTGATGGCTTGATGGGGAGAACAGCAAGTTTATGTACAGTGGAGTATGTAAGAGATATAAAACGAATATCTTGTATTTTGTGCTGGATGATTATGACTGTTCAGCATTGCTTATGACAAACGCATTACCCAAAGAATTAAAGTATAGAGGCGTTTTGAA] [+] EMBL AK108939 [GAGGTGACGAGGTGTAATTAAGATGAAGATTACAAGCACGGCGATGCTGGCGCCGGTGTACGGCACGCCGCACCCGCTCGCCGGCGCGGAGGTCCAGCTCACCGTGTTCGACCGGGCGGCGTTCGACCTGTACGTACCCAGCGTGCTCGCGTACCGGGCGCCGGCGCCGTCGAACGAGGCGATCAAGGAGGGCCTCCTCAGGGCCGTCGCGGCGTACCCTCACCTCGCCGGCCGCCTCGCCGTCGACCACCACGGCCGCCGCTTCCTCCACGTGAACGACCAGGGCGTGCTCGTCGTCGAGGCCACCGTCGACGGCGCCGACCTAGACGACGTGCTCGCCAACAGCGGCCGCGCCATGGCCACCGACGTCGCCGACCTCTACCCCGCGTTGCCGGAGGACAACGTCGGCGCCGCGCTGCTGCAGGTGAAGCTCGTCCGGTACAGGTGCGGCGGCCTCGTCGTCGGCAGCATCTGCCACCACCACACCGCCGACGGCCACTCCATGAGCGCCTTCTTCACCGCGTGGGCGACCGCGGTGCGCGAGGGGGAGGGCTTCACCGCGCCGACGCCTTTCCTCGACCGCGCCGCCACGGCCGTGCCCCGCACCCCGCCGGTGCCGGCGTTCGACCACCGTTCCATCGAGTTCGACGGAGGAGAAGCCGCCGCCGCCGGTGGCGGCAGGTCGTCCTACGCCGCCGTGTCCCTGGACAAGATCAAGGACCTGACCGTGCACTTCACGGCGGAGTTCGTCGGCGAGCTCAAGGCCCGCGCCGGCGGCCGGTGCAGCACGTTCCAGTGCCTGCTCGCGCACGTGTGGAAGAAGATCACGGCGGCGAGGGACCTGAGCCCGGAGGAGTTCACGCAGGTGAGGGTGGCGGTGAACTGCCGGGGCAGAGCCAACCCGCCCGTGCCCATGGACTTCTTCGGCAACATGGTGCTCTGGGCGTTCCCGAGGATGCGGGCGCGCGAGCTCCTCCGCGCCACCTACGGCGCCGTCGTGGGCGCCATCCGCGACGCCGTGGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGCGGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTGCCCAGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCACCGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGTCCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGTCGAGGCGTTCGAGCGCATCATCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCCGTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTGCCCCAATTTAAGTGTAGTCGTGGTTTTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAAAAAATAGTTTCACATAAAGTAATATTCATGTTTTATCATATAATAACAATAAAAATACTAATCATAAAAGTTTTTACAAATAAGACAGATGGTAAATGTTGAACACAACCAATGCAAAACTGCAGTCTTCTGGGATGGAAGTAGTATAAAACTATGGCGTGCGGGTGGCAAACTGATGTGATTAGCCACTTGTCTTTCCACGATGCTGTTTTCTCGAGCTTGTGTTGATGTTAAGCGTGATTAGCCACAGTCTAATGTGCAAATTTGTTCTGTAAATATATATAAGATTGATGGCTTGATGGGGAGAACAGCAAGTTTATGTACAGTGGAGTATGTAAGAGATATAAAACGAATATCTTGTATTTTGTGCTGGATGATTATGACTGTTCAGCATTGCTTATGACAAACGCATTACCCAAAGAATTAAAGTATAGAGGCGTTTTGAA] [+] EMBL AU070667 [ AATTAAGATGAAGATTACAAGCACGGCGATGCTGGCGCCGGTGTACGGCACGCCGCACCCGCTCGCCGGCGCGGAGGTCCAGCTCACCGTGTTCGACCGGGCGGCGTTCGACCTGTACGTACCCAGCGTGCTCGCGTACCGGGCGCCGGCGCCGTCGAACGAGGCGATCAAGGAGGGCCTCCTCAGGGCCGTCGCGGCGTACCCTCACCTCGCCGGCCGCCTCGCCGTCGACCACCACGGCCGCCGCTTCCTCCACGTGAACGACCAGGGCGTGCTCGTCGTCGAGGCCACCGTCGACGGCGCCGACCTAGACGACGTG ] [+] EMBL AU163456 [ AGATGAAGATTACAAGCACGGCGATGNTGGCGCCGGTGTACGGCACGCCGCACCCGCTCGCCGGCGCGGAGGTCCAGCTCACCGTGTTCGACCGGGCGGCGTTCGACCTGTACGTACCCAGCGTGCTCGCGTACCGGGCGCCGGCGCCGTCGAACGAGGCGATCAAGGAGGGCCTCCTCAGGGCCGTCGCGGCGTACCCTCACCTCGCCGGCCGCCTCGCCGTCGACCACCACGGCCGCCGCTTCCTCCACGTGAACGACCAGGGCGTGCTCGTCGTCGAGGCCACCGTCGACGGCGCCGACCTAGACGACGTGC ] consensusID : consensus_7192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [GCCGTCGTGGGCGCCATCCGCGACGCCGTGGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGCGGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTGCCCGGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCACCGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGTCCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGTCGAGGCGTTCGAGCGCATCGTCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCCGTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTGTCCCAATTTAAGTGTAGTCGGGTATTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAAAAAATAGTTTCACATTNAAAANANNNNNNNNNNNNNNNANNNNNNATATANNTAATATNNAAAN] [+] EMBL BE041116 [GCCGTCGTGGGCGCCATCCGCGACGCCGTGGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGCGGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTGCCCGGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCACCGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGTCCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGTCGAGGCGTTCGAGCGCATCGTCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCCGTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTGTCCCAATTTAAGTGTAGTCGGGTATTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAAAAAATAGTTTCACATTNAAAANANNNNNNNNNNNNNNNANNNNNNATATANNTAATATNNAAAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7192#0 GAGGTGACGAGGTGTAATTAAGATGAAGATTACAAGCACGGCGATGCTGGCGCCGGTGTA 60 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 CGGCACGCCGCACCCGCTCGCCGGCGCGGAGGTCCAGCTCACCGTGTTCGACCGGGCGGC 120 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 GTTCGACCTGTACGTACCCAGCGTGCTCGCGTACCGGGCGCCGGCGCCGTCGAACGAGGC 180 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 GATCAAGGAGGGCCTCCTCAGGGCCGTCGCGGCGTACCCTCACCTCGCCGGCCGCCTCGC 240 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 CGTCGACCACCACGGCCGCCGCTTCCTCCACGTGAACGACCAGGGCGTGCTCGTCGTCGA 300 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 GGCCACCGTCGACGGCGCCGACCTAGACGACGTGCTCGCCAACAGCGGCCGCGCCATGGC 360 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 CACCGACGTCGCCGACCTCTACCCCGCGTTGCCGGAGGACAACGTCGGCGCCGCGCTGCT 420 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 GCAGGTGAAGCTCGTCCGGTACAGGTGCGGCGGCCTCGTCGTCGGCAGCATCTGCCACCA 480 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 CCACACCGCCGACGGCCACTCCATGAGCGCCTTCTTCACCGCGTGGGCGACCGCGGTGCG 540 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 CGAGGGGGAGGGCTTCACCGCGCCGACGCCTTTCCTCGACCGCGCCGCCACGGCCGTGCC 600 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 CCGCACCCCGCCGGTGCCGGCGTTCGACCACCGTTCCATCGAGTTCGACGGAGGAGAAGC 660 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 CGCCGCCGCCGGTGGCGGCAGGTCGTCCTACGCCGCCGTGTCCCTGGACAAGATCAAGGA 720 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 CCTGACCGTGCACTTCACGGCGGAGTTCGTCGGCGAGCTCAAGGCCCGCGCCGGCGGCCG 780 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 GTGCAGCACGTTCCAGTGCCTGCTCGCGCACGTGTGGAAGAAGATCACGGCGGCGAGGGA 840 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 CCTGAGCCCGGAGGAGTTCACGCAGGTGAGGGTGGCGGTGAACTGCCGGGGCAGAGCCAA 900 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 CCCGCCCGTGCCCATGGACTTCTTCGGCAACATGGTGCTCTGGGCGTTCCCGAGGATGCG 960 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 GGCGCGCGAGCTCCTCCGCGCCACCTACGGCGCCGTCGTGGGCGCCATCCGCGACGCCGT 1020 consensus_7192#1 -------------------------------GCCGTCGTGGGCGCCATCCGCGACGCCGT 29 ***************************** consensus_7192#0 GGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGC 1080 consensus_7192#1 GGCGAGGGTCGACGGCGAGTACATCCAGTCGTTCGTCGACTTCGGCGGCGCGGCGGCGGC 89 ************************************************************ consensus_7192#0 GGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTG 1140 consensus_7192#1 GGGCGGCGGCGGCGGCGGGGATCTCGTGGCGACGGCGGCGGCGGCGGGCACGATGTTGTG 149 ************************************************************ consensus_7192#0 CCCAGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCAC 1200 consensus_7192#1 CCCGGACCTGGAGGTGGATAGCTGGCTCGGGTTCAGGTTCCACCAGATGGACCTCGGCAC 209 *** ******************************************************** consensus_7192#0 CGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGT 1260 consensus_7192#1 CGGCTCGCCGGCGGCGTTCCTGCCGCCGGACCTGCCCGTGGAGGGGCTGATGGTGTTCGT 269 ************************************************************ consensus_7192#0 CCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGT 1320 consensus_7192#1 CCCGTCGCGCGCGGCGAAGGGCGGCGTCGACGTGTTCATGGCCGTGGCGGAGCACCACGT 329 ************************************************************ consensus_7192#0 CGAGGCGTTCGAGCGCATCATCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCC 1380 consensus_7192#1 CGAGGCGTTCGAGCGCATCGTCTACTCCTTGGAGGAAGGACATGGGCATCATGTCGGCCC 389 ******************* **************************************** consensus_7192#0 GTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTG 1440 consensus_7192#1 GTGTCACCTCTAGACAACGATGCATAATGCATTAGATCACTCTAAACTCTACTACCTCTG 449 ************************************************************ consensus_7192#0 CCCCAATTTAAGTGTAGTCGTGGTTTTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAA 1500 consensus_7192#1 TCCCAATTTAAGTGTAGTCG-GGTATTTCGTGTTCAAGTTTGATCGCCCATCTTATTAAA 508 ******************* *** *********************************** consensus_7192#0 AAAATAGTTTCACATAAAGTAATATTCATGTTTTATCATATAATAACAATAAAAATACTA 1560 consensus_7192#1 AAAATAGTTTCACATT---NAAAANANNNNNNNNNNNNNNNANNNNNNATATANNTAATA 565 *************** ** * * *** * ** ** consensus_7192#0 ATCATAAAAGTTTTTACAAATAAGACAGATGGTAAATGTTGAACACAACCAATGCAAAAC 1620 consensus_7192#1 TNNAAAN----------------------------------------------------- 572 * * consensus_7192#0 TGCAGTCTTCTGGGATGGAAGTAGTATAAAACTATGGCGTGCGGGTGGCAAACTGATGTG 1680 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 ATTAGCCACTTGTCTTTCCACGATGCTGTTTTCTCGAGCTTGTGTTGATGTTAAGCGTGA 1740 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 TTAGCCACAGTCTAATGTGCAAATTTGTTCTGTAAATATATATAAGATTGATGGCTTGAT 1800 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 GGGGAGAACAGCAAGTTTATGTACAGTGGAGTATGTAAGAGATATAAAACGAATATCTTG 1860 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 TATTTTGTGCTGGATGATTATGACTGTTCAGCATTGCTTATGACAAACGCATTACCCAAA 1920 consensus_7192#1 ------------------------------------------------------------ consensus_7192#0 GAATTAAAGTATAGAGGCGTTTTGAA 1946 consensus_7192#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||