|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2012 fasta sequence
[CTTCTACATGCTCTTCAACCTCGGCCTCACCGCCTACCTCATCGGCAACATGACCAACCTCGTCGTTGAGGGCACCCGCCGTACCATGGAATTCAGGAACAGCATTCGTGCTGCCTCCAATTTCGTGGGCCGGAACCACCTGCCGCCTAGGCTGAAGCAGCAGATACTGGCCTACATGTGCCTCAAGTTCAGGGCAGAGAGCCTGAACCAGCAGCAGCTGATGGATCAGCTCCCCAAATCCATCTGCAAGGGCATCTGCGAGTACCTCTTCCTCCCCGTCGTCAAGGACGTCTACCTCTTCAAGGGTGTCTCAAGAGAAGTGCTCCTTCTCATGGTTACGAAGATGAAGCCGGAGTACATACCGCCGAAGGAGGACGTGATCGTGCAGAACGAGGCGCCGGACGACGTCTACATCGTGGTGTCCGGCGAGGTGGAGGTGATCTACTCCGACGGCGAAGCCGAGGAGCGGGTGGTGGCGACGCTGGGGACGAGGGGCGTGTTCGGCGAGGTGAGCGCGCTCAGCGACCGCCCGCAGAGCTTCACGCTGCGGACGCGGACGCTGTGCCAGCTGCTGCGCCTGCGCCAGGCCGCGCTCAAGGAGGCCATGCAGAGCAAGCCCGAGGACAGCGTCGTCATCATCAAGAACTTCCTCAAGCATCAGATCGAGATGCACGACATGAAGGTGGAGGACTTGCTCGGGGAGGACGCCGCCGGCGAGTACGACCACGGCAACATACCGTGCAATCTGCTGACGGTGGCAGCCACCGGGAACAGCAGCTTCCTTGAGGATCTCCTGAAAGTTGGAATGGATCCTGACGTCGGTGACTCCAAGGGAAGAACTGCACTGCATATAGCGGCATCGAAGGGGTACGAGGACTGCGTGCTGGTTCTCCTCAAGCAAGCGTGCAACGTAAACATCAAAGACGCGCAGGGCAACACGGCGCTGTGGAACGCCATCGCCGCGAGGCACCACAAGATCTTCAACATCCTGTACCACTTCGCGCGCGTCTCGAGCCCGCACCACGCCGCCGGCGACCTCCTCTGCCTCGCCGCGCGCCGGGGCGACCTCGACACGCTCCGGGAGCTCCTCAAGCACGGCCTCGCCGTCGACTCGGAGGACCGGGACGGCGCCACGGCGCTCCGCGTCGCGCTCGCCGAGGGCCACGCCGACGTCGCCAGGCTCCTCGTCCTCAACGGCGCCAGCGTCGACAGGGCGGCCAGCCACAACGAGCAGCAGGCGGCGGCGGCGGTGTCGGTCGACGAGCTGCGGGAGCTCATGAAGACGCGCGAGCTCGCGCACCCGGTCACCATCGTCGTCGACTCGCCGTCGCCGGCCGCCGCAGCCGTCATCCGGGAGGTCGGCTCGTCGGGGGACAGCCGGA-ATGGGCGGCGCCAGAGCGCGAGATCAGA-CGGCGCGCACTGGCCACGGGTGAGCATATACAGGGGCCATCCATT-CGTCAGAAACCGTAGCTCAGAAGCCGGCAAGCTGATCAACCTGCCCGGCA-CCAT-GGAAGAATTCAGAATCATCATAGAGGAGAAACTGAAAGTCGACGCGAGGAAGACGCTGATCATGAACGACGAAGGAGCGGAGATTGACTCGATCGACGTGATCCGGGACAACGATAAGCTGTTCATAGTGACCGAGGAGCATATGACAGCAGTAGCATCGATGGACTCGGTGTCTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCACAATAGGTGTAAAACTAGTCTCCCCAATCTGTTCCTTTTA-GGATTAACCGAAC-AAGCCTAATCAAGTTTTCTATTGGCGAC-ATCCCACAATGTGAGAAGTGCC-ATATAATTGAAGTGATTAATGGTTTTGTAGTGTATTGGATTAGGAGATAGATATGCCATAAACAGATTCACAATTGCTACTACCTCCGTTTCAAAATTGTACTCCATCTATTTTATATTATAAAACGTTTTGATTTTTTTTAAAAAA]
[+] EMBL AK061594 [CTTCTACATGCTCTTCAACCTCGGCCTCACCGCCTACCTCATCGGCAACATGACCAACCTCGTCGTTGAGGGCACCCGCCGTACCATGGAATTCAGGAACAGCATTCGTGCTGCCTCCAATTTCGTGGGCCGGAACCACCTGCCGCCTAGGCTGAAGCAGCAGATACTGGCCTACATGTGCCTCAAGTTCAGGGCAGAGAGCCTGAACCAGCAGCAGCTGATGGATCAGCTCCCCAAATCCATCTGCAAGGGCATCTGCGAGTACCTCTTCCTCCCCGTCGTCAAGGACGTCTACCTCTTCAAGGGTGTCTCAAGAGAAGTGCTCCTTCTCATGGTTACGAAGATGAAGCCGGAGTACATACCGCCGAAGGAGGACGTGATCGTGCAGAACGAGGCGCCGGACGACGTCTACATCGTGGTGTCCGGCGAGGTGGAGGTGATCTACTCCGACGGCGAAGCCGAGGAGCGGGTGGTGGCGACGCTGGGGACGAGGGGCGTGTTCGGCGAGGTGAGCGCGCTCAGCGACCGCCCGCAGAGCTTCACGCTGCGGACGCGGACGCTGTGCCAGCTGCTGCGCCTGCGCCAGGCCGCGCTCAAGGAGGCCATGCAGAGCAAGCCCGAGGACAGCGTCGTCATCATCAAGAACTTCCTCAAGCATCAGATCGAGATGCACGACATGAAGGTGGAGGACTTGCTCGGGGAGGACGCCGCCGGCGAGTACGACCACGGCAACATACCGTGCAATCTGCTGACGGTGGCAGCCACCGGGAACAGCAGCTTCCTTGAGGATCTCCTGAAAGTTGGAATGGATCCTGACGTCGGTGACTCCAAGGGAAGAACTGCACTGCATATAGCGGCATCGAAGGGGTACGAGGACTGCGTGCTGGTTCTCCTCAAGCAAGCGTGCAACGTAAACATCAAAGACGCGCAGGGCAACACGGCGCTGTGGAACGCCATCGCCGCGAGGCACCACAAGATCTTCAACATCCTGTACCACTTCGCGCGCGTCTCGAGCCCGCACCACGCCGCCGGCGACCTCCTCTGCCTCGCCGCGCGCCGGGGCGACCTCGACACGCTCCGGGAGCTCCTCAAGCACGGCCTCGCCGTCGACTCGGAGGACCGGGACGGCGCCACGGCGCTCCGCGTCGCGCTCGCCGAGGGCCACGCCGACGTCGCCAGGCTCCTCGTCCTCAACGGCGCCAGCGTCGACAGGGCGGCCAGCCACAACGAGCAGCAGGCGGCGGCGGCGGTGTCGGTCGACGAGCTGCGGGAGCTCATGAAGACGCGCGAGCTCGCGCACCCGGTCACCATCGTCGTCGACTCGCCGTCGCCGGCCGCCGCAGCCGTCATCCGGGAGGTCGGCTCGTCGGGGGACAGCCGGA ATGGGCGGCGCCAGAGCGCGAGATCAGA CGGCGCGCACTGGCCACGGGTGAGCATATACAGGGGCCATCCATT CGTCAGAAACCGTAGCTCAGAAGCCGGCAAGCTGATCAACCTGCCCGGCA CCAT GGAAGAATTCAGAATCATCATAGAGGAGAAACTGAAAGTCGACGCGAGGAAGACGCTGATCATGAACGACGAAGGAGCGGAGATTGACTCGATCGACGTGATCCGGGACAACGATAAGCTGTTCATAGTGACCGAGGAGCATATGACAGCAGTAGCATCGATGGACTCGGTGTCTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCACAATAGGTGTAAAACTAGTCTCCCCAATCTGTTCCTTTTA GGATTAACCGAACAAAGCCTAATCAAGTTTTCTATTG ]
[+] EMBL BM037853 [ CGTC GGGGNCACCCGGAGAT GGCCGCCCCAGAGC CGAGATCAGAGCNGCGCGCACT GCCACGGGTGAGCATATACCGGGCCCATCCATTCCGTCAGAAACCGTAGCTCAGAAGCCGGCAAGCTGATCAACCTGCCCGGCACCCATGGGAAGAATTCAGAATCATCATAGAGGAGAAACTGAAAGTCGACGCGAGGAAGACCCTGATCATGAACGACGAAGGAGCGGAGATTGACTCGATCGACGTGATCCGGGAC ACGATAAGCTGTTCATAGTGACCGAGGAGCATATGACA CAGTAGCATCGATGGACTCGGTGTCTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCAC ATAGGTGTAAAACTAGTCTCCCCAATCTGTTCCTTTTA GGATTAACCGAAC AAGCCTAATCAAGTTTTCTATTGGCGACAATCCCACAATGTGAGAAGTGCCAATATAATTGAAGTGATTAATGGTTTTGTAGTGTATTGGATTAGGAGATAGATATGCCATAAACAGATTCACAATTGCTACTACCTCCGTTTCAAAATTGTACTCCATCTATTTTATATTATAAAACGTTTTGATTTTTTTTAAAAAA]
[+] EMBL BI795831 [ GAGCATATGACAGCAGTAGCATCGATGGACTCGGTGTCTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCACAATAGGTGTAAAACTAGTCTCCCC ATCTGTTCCTTTTAGGGATTAACCGAAC AAGCCTAATCAAGTTTTCTATTGGCGAC ATCCAACAATGTGAGAAGTGCC ATATAATTGAAGTGATTAATGGTTTTGTAGAGTAaaaa ]
consensusID : consensus_7196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence
[ATTCGGCACGAGTAGCACGATGGACCGGTGTTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCACAATAGGTGTNAAACTAGTCTCCCCAATCTGTTCCTTTTAGGATTAACCGAACAAAGCCTAATCAAGTTTTCTATTGGCGACAATCCAACAAATGTGAGAAGTGCC]
[+] EMBL BE228338 [ATTCGGCACGAGTAGCACGATGGACCGGTGTTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTTGAGTGGGAATGTTTTTGCATCACAATAGGTGTNAAACTAGTCTCCCCAATCTGTTCCTTTTAGGATTAACCGAACAAAGCCTAATCAAGTTTTCTATTGGCGACAATCCAACAAATGTGAGAAGTGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7196#0 CTTCTACATGCTCTTCAACCTCGGCCTCACCGCCTACCTCATCGGCAACATGACCAACCT 60
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CGTCGTTGAGGGCACCCGCCGTACCATGGAATTCAGGAACAGCATTCGTGCTGCCTCCAA 120
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 TTTCGTGGGCCGGAACCACCTGCCGCCTAGGCTGAAGCAGCAGATACTGGCCTACATGTG 180
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CCTCAAGTTCAGGGCAGAGAGCCTGAACCAGCAGCAGCTGATGGATCAGCTCCCCAAATC 240
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CATCTGCAAGGGCATCTGCGAGTACCTCTTCCTCCCCGTCGTCAAGGACGTCTACCTCTT 300
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CAAGGGTGTCTCAAGAGAAGTGCTCCTTCTCATGGTTACGAAGATGAAGCCGGAGTACAT 360
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 ACCGCCGAAGGAGGACGTGATCGTGCAGAACGAGGCGCCGGACGACGTCTACATCGTGGT 420
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 GTCCGGCGAGGTGGAGGTGATCTACTCCGACGGCGAAGCCGAGGAGCGGGTGGTGGCGAC 480
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 GCTGGGGACGAGGGGCGTGTTCGGCGAGGTGAGCGCGCTCAGCGACCGCCCGCAGAGCTT 540
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CACGCTGCGGACGCGGACGCTGTGCCAGCTGCTGCGCCTGCGCCAGGCCGCGCTCAAGGA 600
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 GGCCATGCAGAGCAAGCCCGAGGACAGCGTCGTCATCATCAAGAACTTCCTCAAGCATCA 660
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 GATCGAGATGCACGACATGAAGGTGGAGGACTTGCTCGGGGAGGACGCCGCCGGCGAGTA 720
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CGACCACGGCAACATACCGTGCAATCTGCTGACGGTGGCAGCCACCGGGAACAGCAGCTT 780
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CCTTGAGGATCTCCTGAAAGTTGGAATGGATCCTGACGTCGGTGACTCCAAGGGAAGAAC 840
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 TGCACTGCATATAGCGGCATCGAAGGGGTACGAGGACTGCGTGCTGGTTCTCCTCAAGCA 900
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 AGCGTGCAACGTAAACATCAAAGACGCGCAGGGCAACACGGCGCTGTGGAACGCCATCGC 960
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CGCGAGGCACCACAAGATCTTCAACATCCTGTACCACTTCGCGCGCGTCTCGAGCCCGCA 1020
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CCACGCCGCCGGCGACCTCCTCTGCCTCGCCGCGCGCCGGGGCGACCTCGACACGCTCCG 1080
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 GGAGCTCCTCAAGCACGGCCTCGCCGTCGACTCGGAGGACCGGGACGGCGCCACGGCGCT 1140
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CCGCGTCGCGCTCGCCGAGGGCCACGCCGACGTCGCCAGGCTCCTCGTCCTCAACGGCGC 1200
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CAGCGTCGACAGGGCGGCCAGCCACAACGAGCAGCAGGCGGCGGCGGCGGTGTCGGTCGA 1260
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CGAGCTGCGGGAGCTCATGAAGACGCGCGAGCTCGCGCACCCGGTCACCATCGTCGTCGA 1320
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CTCGCCGTCGCCGGCCGCCGCAGCCGTCATCCGGGAGGTCGGCTCGTCGGGGGACAGCCG 1380
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 GAATGGGCGGCGCCAGAGCGCGAGATCAGACGGCGCGCACTGGCCACGGGTGAGCATATA 1440
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CAGGGGCCATCCATTCGTCAGAAACCGTAGCTCAGAAGCCGGCAAGCTGATCAACCTGCC 1500
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CGGCACCATGGAAGAATTCAGAATCATCATAGAGGAGAAACTGAAAGTCGACGCGAGGAA 1560
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 GACGCTGATCATGAACGACGAAGGAGCGGAGATTGACTCGATCGACGTGATCCGGGACAA 1620
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 CGATAAGCTGTTCATAGTGACCGAGGAGCATATGACAGCAGTAGCATCGATGGACTCGGT 1680
consensus_7196#1 -----------------------------ATTCGGCACGAGTAGCA-CGATGGAC-CGGT 29
** * ** ******* ******** ****
consensus_7196#0 GTCTGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTT 1740
consensus_7196#1 GT-TGGATCATAGCATATTCGAGTTTGCTGAATAAGGCCTTGTCCAGCTTGGAGGGATTT 88
** *********************************************************
consensus_7196#0 GAGTGGGAATGTTTTTGCATCACAATAGGTGTAAAACTAGTCTCCCCAATCTGTTCCTTT 1800
consensus_7196#1 GAGTGGGAATGTTTTTGCATCACAATAGGTGTNAAACTAGTCTCCCCAATCTGTTCCTTT 148
******************************** ***************************
consensus_7196#0 TAGGATTAACCGAACAA-GCCTAATCAAGTTTTCTATTGGCGACATCCCAC--AATGTGA 1857
consensus_7196#1 TAGGATTAACCGAACAAAGCCTAATCAAGTTTTCTATTGGCGACAATCCAACAAATGTGA 208
***************** *************************** *** *******
consensus_7196#0 GAAGTGCCATATAATTGAAGTGATTAATGGTTTTGTAGTGTATTGGATTAGGAGATAGAT 1917
consensus_7196#1 GAAGTGCC---------------------------------------------------- 216
********
consensus_7196#0 ATGCCATAAACAGATTCACAATTGCTACTACCTCCGTTTCAAAATTGTACTCCATCTATT 1977
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 TTATATTATAAAACGTTTTGATTTTTTTTAAAAAA 2012
consensus_7196#1 -----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||