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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1931 fasta sequence
[TAGTCGCGTGTCGCGAAATGTCCCGTCTCGTTGTCTCCTCTGCTCCTTGCGCCGCCGCCAAGGCGA-GT-CGCGGCTGAGCCGGGAGGGGGCGGCGATCTCCATTTGGCGAGCAGAGCAGGGGAGGGGATTCTGGTCTGAACTGATCATCATGGTGAAAGAACATGCAGAGAAAGGAGATGGCGTTCAAGAATGCCAATCGTCTCCTGCGCTTTCAGAAGATAACTTGAGGCACAGTTTCCGATTGGGAGATATTACATGGGTTAAGCACAC-TGGCTCGTGGTGGCCAGCACAGGTCGTTGAAAATTCATGTATCAGCAGCAAGCCTAA-GAAGACGGCCAAGCATCATG-TTCCAGTTCGTTTGTATGGCACTTGTGTACACATGTACGTAGACCCTTGGAAGTCTAACATGGAATTCAAAATGATGCTGAAGCGAGAGAATAAAAGTGCAATGGAAGCATTCCATGAGGCCGTTAAGAAGGAGCTGTCCCACGTTAATTCACCTTGCGATTCTACTGAAGAAGCTGGCAACTTGAAAGCCAAGACCTCTTCCAAGAAAGTCAGAAAGCAAAAGGGCTTAAAGGAATCACCAGCCTCTGAGCATATGGGAGAGGATACAAAAGACCAGCATAGTGCAGAGCAGCACCAAGAACTTGGATATACTGCAACAACTGGAGTTGCCACTCGTAAAGGAAGAAGAACGCGAGAAGGTGCAAGACAACTCAGTCCTACTGATGGTGAAGATCAAGCCAGTGGTAAAAAAGCTTCTATTGAGGGTTCAAGTTATAAGACAGAAAAACAAGTTGGTTCTGTATATGATGAAGAGGCTTGTAAGATGACAACGACAGAGAGATCAGTGGGTAGAAGGGAAGGACTGAGACGATCTGCTTGTACACCCATGAAGGCATATTTAGATCCATCGGAGGATAGAACATCACTTTTCAGTGATACAAGTGCAAGTGAAGGTGCAAATGAAGTAAATAGAACACCAGAGAATTCAAATCAGCATGAAGATGATTCAACCATAGATGGAACTTTGGCTTCTCATGCAGAAATAAGGGTTATGGTTAGGGATATACTGTTCAGTGACATTATTGCCAAGCAGCATGCTGCTGAGATGGCATATGTAGATGAAGTGATCAATGGCATTTGCTGCGCTAGTGAATTGAACATAACTGGTGATCCTACTCCTGTTGCAAAGGGTGGACGAGGCATCAAACGAGGTGGTAGTAGGGCAGAGGCGGAGTCAAGTAACATTACACAGAGATCTAGAAAAGGGAGAATAGATCAAGCAAGTAGCAATGGAAAGAAAAGAGCTAAGGACACCTCAGAAACCATGAATCATGACAACAGT-CCCAACTCTTTGAGAGGGCCTTTCGATAGTACT-----GGATGCAGCCATGGAGGAACTGGGGCAAGTTAGCGCGCGTCAAATCAGGATCATGCAGAGTCTTGCTTTGATTGCTCCGTCAGGATCCCCGTTTGGCAAAAATGGACTGGTTGCATCAACCAGTTTATAATTCTGAGTTAATTCGAATATCCTTGAAAGGTATTCGACAGATATTCGAAAGCTATCATAACTCATGAACTCAGCTTCGGTTACACCTAACCAGTTGCTCGCTTAGGTCTTTTGGAGAAACCCACAACGCTACATGGTCTTCTAGAATGCAATGCGATTGCCTTTATGTGTAGTAGAATCGACTGAATTTAATTGCAATGTGAGCACAACATTGTATCTGTAAGGCCACAAAATGGTCCCAGTATACTGCCAACTGAATTCATACATGAGTACACTATTATTATGTTAGTACTAGTACCAAGTTAAGGCTCAAAAAATGGTCCCAGTATACTGCCAACTGAATTCATACATGAGTACACTATTATTATGTTAGTACTAGTACCAAGTTAAGGCTCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK066304 [TAGTCGCGTGTCGCGAAATGTCCCGTCTCGTTGTCTCCTCTGCTCCTTGCGCCGCCGCCAAGGCGA GT CGCGGCTGAGCCGGGAGGGGGCGGCGATCTCCATTTGGCGAGCAGAGCAGGGGAGGGGATTCTGGTCTGAACTGATCATCATGGTGAAAGAACATGCAGAGAAAGGAGATGGCGTTCAAGAATGCCAATCGTCTCCTGCGCTTTCAGAAGATAACTTGAGGCACAGTTTCCGATTGGGAGATATTACATGGGTTAAGCACAC TGGCTCGTGGTGGCCAGCACAGGTCGTTGAAAATTCATGTATCAGCAGCAAGCCTAA GAAGACGGCCAAGCATCATG TTCCAGTTCGTTTGTATGGCACTTGTGTACACATGTACGTAGACCCTTGGAAGTCTAACATGGAATTCAAAATGATGCTGAAGCGAGAGAATAAAAGTGCAATGGAAGCATTCCATGAGGCCGTTAAGAAGGAGCTGTCCCACGTTAATTCACCTTGCGATTCTACTGAAGAAGCTGGCAACTTGAAAGCCAAGACCTCTTCCAAGAAAGTCAGAAAGCAAAAGGGCTTAAAGGAATCACCAGCCTCTGAGCATATGGGAGAGGATACAAAAGACCAGCATAGTGCAGAGCAGCACCAAGAACTTGGATATACTGCAACAACTGGAGTTGCCACTCGTAAAGGAAGAAGAACGCGAGAAGGTGCAAGACAACTCAGTCCTACTGATGGTGAAGATCAAGCCAGTGGTAAAAAAGCTTCTATTGAGGGTTCAAGTTATAAGACAGAAAAACAAGTTGGTTCTGTATATGATGAAGAGGCTTGTAAGATGACAACGACAGAGAGATCAGTGGGTAGAAGGGAAGGACTGAGACGATCTGCTTGTACACCCATGAAGGCATATTTAGATCCATCGGAGGATAGAACATCACTTTTCAGTGATACAAGTGCAAGTGAAGGTGCAAATGAAGTAAATAGAACACCAGAGAATTCAAATCAGCATGAAGATGATTCAACCATAGATGGAACTTTGGCTTCTCATGCAGAAATAAGGGTTATGGTTAGGGATATACTGTTCAGTGACATTATTGCCAAGCAGCATGCTGCTGAGATGGCATATGTAGATGAAGTGATCAATGGCATTTGCTGCGCTAGTGAATTGAACATAACTGGTGATCCTACTCCTGTTGCAAAGGGTGGACGAGGCATCAAACGAGGTGGTAGTAGGGCAGAGGCGGAGTCAAGTAACATTACACAGAGATCTAGAAAAGGGAGAATAGATCAAGCAAGTAGCAATGGAAAGAAAAGAGCTAAGGACACCTCAGAAACCATGAATCATGACAACAGT CCCAACTCTTTGAGAGGGCCTTTCGATAGTACT GGATGCAGCCATGGAGGAACTGGGGCAAGTTAGCGCGCGTCAAATCAGGATCATGCAGAGTCTTGCTTTGATTGCTCCGTCAGGATCCCCGTTTGGCAAAAATGGACTGGTTGCATCAACCAGTTTATAATTCTGAGTTAATTCGAATATCCTTGAAAGGTATTCGACAGATATTCGAAAGCTATCATAACTCATGAACTCAGCTTCGGTTACACCTAACCAGTTGCTCGCTTAGGTCTTTTGGAGAAACCCACAACGCTACATGGTCTTCTAGAATGCAATGCGATTGCCTTTATGTGTAGTAGAATCGACTGAATTTAATTGCAATGTGAGCACAACATTGTATCTGTAAGGCCACAAAATGGTCCCAGTATACTGCCAACTGAATTCATACATGAGTACACTATTATTATGTTAGTACTAGTACCAA ]
[+] EMBL C28796 [ TCCCGTCTCGTTGTCTCCTCTGCTCCTTGNGCCGCCGCCAAGG GATGTNCGCGGCTGANCCGGGAGGGGGCGGCGATCTCCATTTGGCGAGCAGAGCAGGGGAGGGGATTCTGGTCTGAACTGATCATNATGGTGAAAGAACATGCAGAGAAAGGAGATGGCGTTCAAGAATGCCAATCGTCTCCTGCGCTTTCAGAAGATAACTTGAGGCACAGTTTCCGATTGGNNGATATTACATGGGTTANGCACACTTGGCTCGTGGTGGCCAGCACAGGTCGTTGAAAATTCATGTATCAGCAGCAAGCCTAAGGAAGACGGCCAAGCATCATGTTTCCGTTTCGTTTGTATGGCACTTGTG ]
[+] EMBL AU081272 [ CCATGAATCATG CAACAGTCCCCAACTCTTTGANAGGGCCTTTCGATAGTACTAGCAGGGATGCAGCCATGGAGGAACTGGGGCAAGTTAGCGCGCGTCAAATCAGGATCATGCAGAGTCTTGCTTTGATTGCTCCGTCAGGATCCCCGTTTGGCAAAAATGGACTGGTTGCATCAACCAGTTTATAATTCTGAGTTAATTCGAATATCCTTGAAAGGTATTCGACAGATATTCGAAAGCTATCATAACTCATGAACTCAGCTTCGGTTACACCTAACCAGTTGCTCGCTTAGGTCTTTTGGAGAAACCCACAACGCTACATGGTCTTNTAGAATGCAATGCGATTGCCTTTATGTGTAGTAGAATCGACTGAATTTAATTGCAATGTGAGCACAACATTGTATCTGTAAGGCCACAAAATGGTCCCAGTATACTGCCAACTGAATTCATACATGAGTACACTATTATTATGTTAGTACTAGTACCAAGTTAAGGCTCAAAAAATGGTCCCAGTATACTGCCAACTGAATTCATACATGAGTACACTATTATTATGTTAGTACTAGTACCAAGTTAAGGCTCAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[AGAGGACGAGACAAGGGGTAATAGATCAAGCAAGTAGCAATGGAAAGAAAAGGGCTAAGGACACCTCAGAAACCATGAATCATGACAACAGTCCCAACTCTTTGAGAGGGCCTTTCGATAGTACTAGCAGGGATGCAGCCATGGAGGAACTGGGGCAAGTTAGCGCGCGTCAAATCAGGATCATGCAGAGTCTTGCTTTGATTGCTCCGTCAGGATCCCCGTTTGGCAAAAATGGACTGGTTGCATCAACCAGTTTATAATTCTGAGTTAATTCGAATATCCTTGAAAGGTTCGGAGCAATACTTCCAACGTTTTGCCGTCCTTGGTTCCACAGCATTTTGGATACAGATATTCGAAAGCTATCATAACTCATGAACTCAGCTTCGGTTACACCTAACCAGTTGCTCGCTTGGGTCTTTTGGAGAAACCCACAACGCTACATGGTCTTCTAGAATGCAATGCGATTGCCTTTATGTGTAGTAGAATCGACTGAATTTAATTGCAATGTGAGCACAACATTGTATCTGTAAGGCCACAAAATGGTCCCAGTATACTGCCAACTGAATTCATACATGAGTACACTATTATTATGTTAGTACTAGTACCAAAAAAAAAAA]
[-] EMBL CA761888 [AGAGGACGAGACAAGGGGTAATAGATCAAGCAAGTAGCAATGGAAAGAAAAGGGCTAAGGACACCTCAGAAACCATGAATCATGACAACAGTCCCAACTCTTTGAGAGGGCCTTTCGATAGTACTAGCAGGGATGCAGCCATGGAGGAACTGGGGCAAGTTAGCGCGCGTCAAATCAGGATCATGCAGAGTCTTGCTTTGATTGCTCCGTCAGGATCCCCGTTTGGCAAAAATGGACTGGTTGCATCAACCAGTTTATAATTCTGAGTTAATTCGAATATCCTTGAAAGGTTCGGAGCAATACTTCCAACGTTTTGCCGTCCTTGGTTCCACAGCATTTTGGATACAGATATTCGAAAGCTATCATAACTCATGAACTCAGCTTCGGTTACACCTAACCAGTTGCTCGCTTGGGTCTTTTGGAGAAACCCACAACGCTACATGGTCTTCTAGAATGCAATGCGATTGCCTTTATGTGTAGTAGAATCGACTGAATTTAATTGCAATGTGAGCACAACATTGTATCTGTAAGGCCACAAAATGGTCCCAGTATACTGCCAACTGAATTCATACATGAGTACACTATTATTATGTTAGTACTAGTACCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7201#0 TAGTCGCGTGTCGCGAAATGTCCCGTCTCGTTGTCTCCTCTGCTCCTTGCGCCGCCGCCA 60
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 AGGCGAGTCGCGGCTGAGCCGGGAGGGGGCGGCGATCTCCATTTGGCGAGCAGAGCAGGG 120
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 GAGGGGATTCTGGTCTGAACTGATCATCATGGTGAAAGAACATGCAGAGAAAGGAGATGG 180
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 CGTTCAAGAATGCCAATCGTCTCCTGCGCTTTCAGAAGATAACTTGAGGCACAGTTTCCG 240
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 ATTGGGAGATATTACATGGGTTAAGCACACTGGCTCGTGGTGGCCAGCACAGGTCGTTGA 300
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 AAATTCATGTATCAGCAGCAAGCCTAAGAAGACGGCCAAGCATCATGTTCCAGTTCGTTT 360
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 GTATGGCACTTGTGTACACATGTACGTAGACCCTTGGAAGTCTAACATGGAATTCAAAAT 420
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 GATGCTGAAGCGAGAGAATAAAAGTGCAATGGAAGCATTCCATGAGGCCGTTAAGAAGGA 480
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 GCTGTCCCACGTTAATTCACCTTGCGATTCTACTGAAGAAGCTGGCAACTTGAAAGCCAA 540
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 GACCTCTTCCAAGAAAGTCAGAAAGCAAAAGGGCTTAAAGGAATCACCAGCCTCTGAGCA 600
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 TATGGGAGAGGATACAAAAGACCAGCATAGTGCAGAGCAGCACCAAGAACTTGGATATAC 660
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 TGCAACAACTGGAGTTGCCACTCGTAAAGGAAGAAGAACGCGAGAAGGTGCAAGACAACT 720
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 CAGTCCTACTGATGGTGAAGATCAAGCCAGTGGTAAAAAAGCTTCTATTGAGGGTTCAAG 780
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 TTATAAGACAGAAAAACAAGTTGGTTCTGTATATGATGAAGAGGCTTGTAAGATGACAAC 840
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 GACAGAGAGATCAGTGGGTAGAAGGGAAGGACTGAGACGATCTGCTTGTACACCCATGAA 900
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 GGCATATTTAGATCCATCGGAGGATAGAACATCACTTTTCAGTGATACAAGTGCAAGTGA 960
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 AGGTGCAAATGAAGTAAATAGAACACCAGAGAATTCAAATCAGCATGAAGATGATTCAAC 1020
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 CATAGATGGAACTTTGGCTTCTCATGCAGAAATAAGGGTTATGGTTAGGGATATACTGTT 1080
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 CAGTGACATTATTGCCAAGCAGCATGCTGCTGAGATGGCATATGTAGATGAAGTGATCAA 1140
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 TGGCATTTGCTGCGCTAGTGAATTGAACATAACTGGTGATCCTACTCCTGTTGCAAAGGG 1200
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 TGGACGAGGCATCAAACGAGGTGGTAGTAGGGCAGAGGCGGAGTCAAGTAACATTACACA 1260
consensus_7201#1 -----------------------------------------------------------A 1
*
consensus_7201#0 GAGATCTAGAAAAGGGAGAATAGATCAAGCAAGTAGCAATGGAAAGAAAAGAGCTAAGGA 1320
consensus_7201#1 GAGGACGAGACAAGGGGTAATAGATCAAGCAAGTAGCAATGGAAAGAAAAGGGCTAAGGA 61
*** * *** ***** ********************************* ********
consensus_7201#0 CACCTCAGAAACCATGAATCATGACAACAGTCCCAACTCTTTGAGAGGGCCTTTCGATAG 1380
consensus_7201#1 CACCTCAGAAACCATGAATCATGACAACAGTCCCAACTCTTTGAGAGGGCCTTTCGATAG 121
************************************************************
consensus_7201#0 TACT-----GGATGCAGCCATGGAGGAACTGGGGCAAGTTAGCGCGCGTCAAATCAGGAT 1435
consensus_7201#1 TACTAGCAGGGATGCAGCCATGGAGGAACTGGGGCAAGTTAGCGCGCGTCAAATCAGGAT 181
**** ***************************************************
consensus_7201#0 CATGCAGAGTCTTGCTTTGATTGCTCCGTCAGGATCCCCGTTTGGCAAAAATGGACTGGT 1495
consensus_7201#1 CATGCAGAGTCTTGCTTTGATTGCTCCGTCAGGATCCCCGTTTGGCAAAAATGGACTGGT 241
************************************************************
consensus_7201#0 TGCATCAACCAGTTTATAATTCTGAGTTAATTCGAATATCCTTGAAAGGT---------- 1545
consensus_7201#1 TGCATCAACCAGTTTATAATTCTGAGTTAATTCGAATATCCTTGAAAGGTTCGGAGCAAT 301
**************************************************
consensus_7201#0 ------------------------ATTCGACAG--------------ATATTCGAAAGCT 1567
consensus_7201#1 ACTTCCAACGTTTTGCCGTCCTTGGTTCCACAGCATTTTGGATACAGATATTCGAAAGCT 361
*** **** *************
consensus_7201#0 ATCATAACTCATGAACTCAGCTTCGGTTACACCTAACCAGTTGCTCGCTTAGGTCTTTTG 1627
consensus_7201#1 ATCATAACTCATGAACTCAGCTTCGGTTACACCTAACCAGTTGCTCGCTTGGGTCTTTTG 421
************************************************** *********
consensus_7201#0 GAGAAACCCACAACGCTACATGGTCTTCTAGAATGCAATGCGATTGCCTTTATGTGTAGT 1687
consensus_7201#1 GAGAAACCCACAACGCTACATGGTCTTCTAGAATGCAATGCGATTGCCTTTATGTGTAGT 481
************************************************************
consensus_7201#0 AGAATCGACTGAATTTAATTGCAATGTGAGCACAACATTGTATCTGTAAGGCCACAAAAT 1747
consensus_7201#1 AGAATCGACTGAATTTAATTGCAATGTGAGCACAACATTGTATCTGTAAGGCCACAAAAT 541
************************************************************
consensus_7201#0 GGTCCCAGTATACTGCCAACTGAATTCATACATGAGTACACTATTATTATGTTAGTACTA 1807
consensus_7201#1 GGTCCCAGTATACTGCCAACTGAATTCATACATGAGTACACTATTATTATGTTAGTACTA 601
************************************************************
consensus_7201#0 GTACCAAGTTAAGGCTCAAAAAATGGTCCCAGTATACTGCCAACTGAATTCATACATGAG 1867
consensus_7201#1 GTACCAAAAAAAAAAA-------------------------------------------- 617
******* **
consensus_7201#0 TACACTATTATTATGTTAGTACTAGTACCAAGTTAAGGCTCAAAAAAAAAAAAAAAAAAA 1927
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 AAAA 1931
consensus_7201#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||