These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1089 fasta sequence [TGGCATTCCCCAGCTTTTCCCCCCATTCCCCCTCCCTCTCTCGCCATCCATTTGCACCCCCATCATCACTTGCGCAAAATTTATACTCCCAACGCGAGATCGCGAGATCGGGAGAGAGAGACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGGAAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGCCGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGGCGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGGCGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCGGCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGAAGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCTAGGACAAGAAGGACAAGAAGAAGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACTAGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCGTCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTCTTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGTGTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGCTTGCTTTTGGCCACTTGTATTTTGGGTTGGGCTAAGTATCAACCTTCCCAACGTAATGTACT] [+] EMBL AK101260 [TGGCATTCCCCAGCTTTTCCCCCCATTCCCCCTCCCTCTCTCGCCATCCATTTGCACCCCCATCATCACTTGCGCAAAATTTATACTCCCAACGCGAGATCGCGAGATCGGGAGAGAGAGACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGGAAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGCCGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGGCGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGGCGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCGGCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGAAGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCTAGGACAAGAAGGACAAGAAGAAGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACTAGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCGTCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTCTTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGTGTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGCTTGCTTTTGGCCACTTGTATTTTGGGTTGGGCTAAGTATCAACCTTCCCAACGTAATGTACT] consensusID : consensus_7207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 985 fasta sequence [CGCGAGATCGCGAGATCGGGAGAGAGAGACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGGAAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGGGCGCGGCGGCAGAGGCGGAGGGCGGGCGGGGGCAGCCACCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGCCGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGGCGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGGCGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCGGCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGAAGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCAAGGACAAGAAGGACAAGAAGAAGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACTAGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCGTCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTCTTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGTGTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGCAAAAAAA] [-] EMBL AK110710 [CGCGAGATCGCGAGATCGGGAGAGAGAGACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGGAAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGGGCGCGGCGGCAGAGGCGGAGGGCGGGCGGGGGCAGCCACCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGCCGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGGCGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGGCGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCGGCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGAAGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCAAGGACAAGAAGGACAAGAAGAAGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACTAGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCGTCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTCTTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGTGTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGC ] [+] EMBL AU093678 [ GCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGC GCCGAAGAAGCGNCGCCGGCGT GCCGCCGGGTGCAGNTCCTCCGACGGGGACTCCAAGAGCTCCGACGGCGAGAAGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCAAGGACAAGAAGGACAAGAAGAAGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACTAGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCGTCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTCTTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGTGTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAAAAAAAAAAAAAAA] consensusID : consensus_7207#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [AGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACNCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCGCGGAGAANCTGCCGCAGCGC] [+] EMBL AU093677 [AGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACNCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCGCGGAGAANCTGCCGCAGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7207#0 TGGCATTCCCCAGCTTTTCCCCCCATTCCCCCTCCCTCTCTCGCCATCCATTTGCACCCC 60 consensus_7207#1 ------------------------------------------------------------ consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 CATCATCACTTGCGCAAAATTTATACTCCCAACGCGAGATCGCGAGATCGGGAGAGAGAG 120 consensus_7207#1 --------------------------------CGCGAGATCGCGAGATCGGGAGAGAGAG 28 consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 ACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGG 180 consensus_7207#1 ACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGG 88 consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 AAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCG 240 consensus_7207#1 AAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCG 148 consensus_7207#2 ------------------------AGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCG 36 ************************************ consensus_7207#0 GCGGAAGCGGCAGGGGATCGAGGTTCAG-------------------------------- 268 consensus_7207#1 GCGGAAGCGGCAGGGGATCGAGGTTCAGGGCGCGGCGGCAGAGGCGGAGGGCGGGCGGGG 208 consensus_7207#2 GCGGAAGCGGCAGGGGATCGAGGTTCAGCA-GCAGCAGCAGCAGCAGCAGCAGCAGCAGC 95 **************************** consensus_7207#0 -----------CAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGT 317 consensus_7207#1 GCAGCCACCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGT 268 consensus_7207#2 AGCAGCAGCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGT 155 ************************************************* consensus_7207#0 CGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCC 377 consensus_7207#1 CGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCC 328 consensus_7207#2 CGTCGGAGGAGACGGTGCCGCTGC-GGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCC 214 ************************ *********************************** consensus_7207#0 CCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGC 437 consensus_7207#1 CCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGC 388 consensus_7207#2 CCGACGACNCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCC-GCGGAGAANCTGC 273 ******** ************************************* ******** **** consensus_7207#0 CGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGG 497 consensus_7207#1 CGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGG 448 consensus_7207#2 CGCAGC-GC--------------------------------------------------- 281 ****** ** consensus_7207#0 CGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGG 557 consensus_7207#1 CGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGG 508 consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 CGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCG 617 consensus_7207#1 CGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCG 568 consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 GCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGA 677 consensus_7207#1 GCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGA 628 consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 AGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCTAGGACAAGAAGGACAAGAAGA 737 consensus_7207#1 AGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCAAGGACAAGAAGGACAAGAAGA 688 consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 AGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACT 797 consensus_7207#1 AGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACT 748 consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 AGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCG 857 consensus_7207#1 AGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCG 808 consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 TCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTC 917 consensus_7207#1 TCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTC 868 consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 TTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGT 977 consensus_7207#1 TTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGT 928 consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 GTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGCTTGCTTTTGG 1037 consensus_7207#1 GTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGCAAAAAAA--- 985 consensus_7207#2 ------------------------------------------------------------ consensus_7207#0 CCACTTGTATTTTGGGTTGGGCTAAGTATCAACCTTCCCAACGTAATGTACT 1089 consensus_7207#1 ---------------------------------------------------- consensus_7207#2 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||