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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1089 fasta sequence
[TGGCATTCCCCAGCTTTTCCCCCCATTCCCCCTCCCTCTCTCGCCATCCATTTGCACCCCCATCATCACTTGCGCAAAATTTATACTCCCAACGCGAGATCGCGAGATCGGGAGAGAGAGACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGGAAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGCCGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGGCGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGGCGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCGGCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGAAGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCTAGGACAAGAAGGACAAGAAGAAGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACTAGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCGTCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTCTTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGTGTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGCTTGCTTTTGGCCACTTGTATTTTGGGTTGGGCTAAGTATCAACCTTCCCAACGTAATGTACT]
[+] EMBL AK101260 [TGGCATTCCCCAGCTTTTCCCCCCATTCCCCCTCCCTCTCTCGCCATCCATTTGCACCCCCATCATCACTTGCGCAAAATTTATACTCCCAACGCGAGATCGCGAGATCGGGAGAGAGAGACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGGAAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGCCGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGGCGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGGCGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCGGCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGAAGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCTAGGACAAGAAGGACAAGAAGAAGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACTAGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCGTCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTCTTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGTGTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGCTTGCTTTTGGCCACTTGTATTTTGGGTTGGGCTAAGTATCAACCTTCCCAACGTAATGTACT]
consensusID : consensus_7207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 985 fasta sequence
[CGCGAGATCGCGAGATCGGGAGAGAGAGACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGGAAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGGGCGCGGCGGCAGAGGCGGAGGGCGGGCGGGGGCAGCCACCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGCCGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGGCGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGGCGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCGGCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGAAGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCAAGGACAAGAAGGACAAGAAGAAGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACTAGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCGTCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTCTTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGTGTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGCAAAAAAA]
[-] EMBL AK110710 [CGCGAGATCGCGAGATCGGGAGAGAGAGACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGGAAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGGGCGCGGCGGCAGAGGCGGAGGGCGGGCGGGGGCAGCCACCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGCCGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGGCGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGGCGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCGGCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGAAGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCAAGGACAAGAAGGACAAGAAGAAGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACTAGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCGTCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTCTTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGTGTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGC ]
[+] EMBL AU093678 [ GCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGC GCCGAAGAAGCGNCGCCGGCGT GCCGCCGGGTGCAGNTCCTCCGACGGGGACTCCAAGAGCTCCGACGGCGAGAAGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCAAGGACAAGAAGGACAAGAAGAAGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACTAGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCGTCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTCTTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGTGTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAAAAAAAAAAAAAAA]
consensusID : consensus_7207#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence
[AGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACNCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCGCGGAGAANCTGCCGCAGCGC]
[+] EMBL AU093677 [AGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCGGCGGAAGCGGCAGGGGATCGAGGTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGTCGTCGGAGGAGACGGTGCCGCTGCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCCCCGACGACNCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCGCGGAGAANCTGCCGCAGCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7207#0 TGGCATTCCCCAGCTTTTCCCCCCATTCCCCCTCCCTCTCTCGCCATCCATTTGCACCCC 60
consensus_7207#1 ------------------------------------------------------------
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 CATCATCACTTGCGCAAAATTTATACTCCCAACGCGAGATCGCGAGATCGGGAGAGAGAG 120
consensus_7207#1 --------------------------------CGCGAGATCGCGAGATCGGGAGAGAGAG 28
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 ACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGG 180
consensus_7207#1 ACGGTGCATGGTTTGTGGCGCCAGTAGCCGAGATAAATATGGACGTCCTGGTTCACACGG 88
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 AAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCG 240
consensus_7207#1 AAGATGACGAGGAGGAGCAGCAGCAGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCG 148
consensus_7207#2 ------------------------AGCAGCAGCAGCTGGAGGAGGAGAAGCGCTACGGCG 36
************************************
consensus_7207#0 GCGGAAGCGGCAGGGGATCGAGGTTCAG-------------------------------- 268
consensus_7207#1 GCGGAAGCGGCAGGGGATCGAGGTTCAGGGCGCGGCGGCAGAGGCGGAGGGCGGGCGGGG 208
consensus_7207#2 GCGGAAGCGGCAGGGGATCGAGGTTCAGCA-GCAGCAGCAGCAGCAGCAGCAGCAGCAGC 95
****************************
consensus_7207#0 -----------CAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGT 317
consensus_7207#1 GCAGCCACCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGT 268
consensus_7207#2 AGCAGCAGCAGCAGCTGCTGCTCATGGACTGCGTCGGCAGCGGGAAGGAGGGCGGGGCGT 155
*************************************************
consensus_7207#0 CGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCC 377
consensus_7207#1 CGTCGGAGGAGACGGTGCCGCTGCCGGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCC 328
consensus_7207#2 CGTCGGAGGAGACGGTGCCGCTGC-GGAGTACGAGCGGCTGTCGCAGTCGGCGCGGCTCC 214
************************ ***********************************
consensus_7207#0 CCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGC 437
consensus_7207#1 CCGACGACGCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCCCGCGGAGAAGCTGC 388
consensus_7207#2 CCGACGACNCGGACCCGCTGATGAAGAGCGACGCCCCGGCGCCGCC-GCGGAGAANCTGC 273
******** ************************************* ******** ****
consensus_7207#0 CGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGG 497
consensus_7207#1 CGCAGCCGCAGACGCCGACGCCGACGGGGACGCCGAAGCTGCAGGCGGCGGAGCGGAAGG 448
consensus_7207#2 CGCAGC-GC--------------------------------------------------- 281
****** **
consensus_7207#0 CGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGG 557
consensus_7207#1 CGCAGAAGCCGGCCAAGGAGCCCCCGTCCCCGCCGCGGTCGCAGCAGCCGAAGCCGGCGG 508
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 CGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCG 617
consensus_7207#1 CGTGGAGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGGCGGAGGAGGCGGCG 568
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 GCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGA 677
consensus_7207#1 GCGGCGTGGCCGCCGGGTGCAGCTCCTCCGACGGCGACTCCAAGAGCTCCGACGGCGAGA 628
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 AGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCTAGGACAAGAAGGACAAGAAGA 737
consensus_7207#1 AGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCAAGGACAAGAAGGACAAGAAGA 688
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 AGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACT 797
consensus_7207#1 AGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACT 748
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 AGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCG 857
consensus_7207#1 AGCTCGCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCG 808
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 TCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTC 917
consensus_7207#1 TCGCACATGTGTACAATTCGGTGCTAGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTC 868
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 TTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGT 977
consensus_7207#1 TTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTTCTCCTCCTCCTTTGT 928
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 GTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGCTTGCTTTTGG 1037
consensus_7207#1 GTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGCAAAAAAA--- 985
consensus_7207#2 ------------------------------------------------------------
consensus_7207#0 CCACTTGTATTTTGGGTTGGGCTAAGTATCAACCTTCCCAACGTAATGTACT 1089
consensus_7207#1 ----------------------------------------------------
consensus_7207#2 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||