These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2093 fasta sequence [AAATCCAGCCGCCACACCATCGGGGCGCCGCTCTACCAGAGCCGCCGCCGACTACCGCCGCACCGGAGCCTTCCCCCGCAACCCCGTCGACGACGACCGCTGCGCCGGAGCCTTCCCGTGCAAACCGATCGACGACGACCGCTGCACCAGATCCGTCCCCTACTTCCTCGTCGTCGACAGCCGCCGCAACGACGCCTTCCGCTGCAACCCCGTCGACGACGACCGCTGCACCAGATCCTTCCCCCACTACGCCGTCGACGACTTCCACTGCATCGGAGCCGGTACCCCGTCGACGACTACTGCCGCACCGAAGCCATCTCCCACAACACCGTTGACGCCTACCGCCGCACCGGAGCCGGGTACCCCATCGACAAGGTCCCTGCACCGTCGCCGTACCTAGCTGATGGGAAGACGTCGACGTCCAGTAGCACGAGTACCCTCGACAAACTAGACGAAAGAAGTGTGCGACGAAGAAGAAACCTACCCTCAAGATGCCACCAGGAGTAAGGATATCAAAGAGAGTGAGGGCGGGTGCTCCAACCGAAATGCCTCCTGGAGTCTCAACAAGGTCAGCGAAAAGGCAACTCATAGCAGAACAAGGTAAAGGTAATGGCCATGAAGAACTGCCTCTAGAAACAGAAAACAATGGTGATGAAGATGTGGGCAGTGGACATTTGCTTCAAGATAATGATGTGAACAGGCCCCCGAGCCCGGTGATGGACTGGTCATATGGACATGATGCCAACCATAAAGAGCAACCTGCACAGCAAACCAATTCTGATGTTGAAGTACCTATACGAAGAGGCACAAGAAAATCAAGGCCACCAACTGCAGGAATAATGCTTGACAAGATGACCAAAGCTATGGGAAGAATGCCCATTGCTGTTGCCGAAGGGAAGAAAAGGCCAGATGAACCGGTGCAAGCTGCCAAGTTTGCATCAGAGGCTGGTGTTATCATTAGGACTAAAGTTCCTGTCTTCCCTCATTGGAAGCAGTACAAGGATGATGAAGGCTATATTAACAACTTCATGGGCAAGTTATCTGTCAGGTTGGCCATTAACCAAAAAAACCAGCCAACAAGGGATGCTTGTGCTGATGTATTGCAGAAAGGGATACGACAAACACGGTATAATTTGAAGAAGGCCTACTTCAATGGAGTACCTGCTAACGAGATTAGAACTACCTCTCCCATAAGTAGCATGACTGATGAACAGTGGCTGGAACTTGTTGCAAAGTGGTCAAATCCAAAGAATATGCAAATCTCTGAACAGAACAAGCAAAACCGGCTTAATGTTAGGTTCCATCAGGCTACGGGATCTCGCAGCTATGCTGCACACTTGCACGCTTACAAGGAGAAGAACAAGGTTGTAGAGCTTGATGTTGTGGATGCCTTTGAGGACTGCCATACCAGTAGGGAAAAAGGTCTAAGTGATGCTGCCAAAGATGCAATTTCAAGTATGAAAGCTATTATGGAAGAACCTGTACCTGATGGTGAGACACCAAGAACTAGTGCAGAAGTTGTGTCCAAGGTTCTCTCTCGGGACAATTCCAATACCACGTTTTTGAAAAATGCTGGTCTGCAGATGAGCTCCAAGAAATCAGTGACACCGACAGAAGCAGCACTTCAGGAAGAACTTGCAGCTGAAAAGCAAAGTTCAGCCATTCTCCATGCAGAAGTTGTCGAACTAAAAGAACAAGCAAATCTTGCAAATGAAGCACTGGCAAAGACTCAAAAGGAGTTGGCAGAGTTCAAGCAGCAGCAGGAAGAGAACAATTTGCTCCTTCGACGTATCTTGAGCCTTTCCCAGGGTAACTTAAATCTGTCCTAGTCTCCTTTATGATCTTCTGCACTGTGATGAACTCCATCTACTTATATTAGTTGTTTGAT-GGTTCTGTGAACTTATTGTCATGTGGTGGACTTGATTA-TGTGAAATGATGTTTGGTGCTATGGTGGACTTAATGTCCTCCTATGGCAAACTTTTGTGGACTTAATGTGAACATATGTGTGCTAGGTTC--TGAACTTTTTTGTAATATGGTGCTATGTGAAGTTGGTATATGTGATATATGTTGATGTTGGGCCTATTTGTAAAAAA] [+] EMBL AK107262 [AAATCCAGCCGCCACACCATCGGGGCGCCGCTCTACCAGAGCCGCCGCCGACTACCGCCGCACCGGAGCCTTCCCCCGCAACCCCGTCGACGACGACCGCTGCGCCGGAGCCTTCCCGTGCAAACCGATCGACGACGACCGCTGCACCAGATCCGTCCCCTACTTCCTCGTCGTCGACAGCCGCCGCAACGACGCCTTCCGCTGCAACCCCGTCGACGACGACCGCTGCACCAGATCCTTCCCCCACTACGCCGTCGACGACTTCCACTGCATCGGAGCCGGTACCCCGTCGACGACTACTGCCGCACCGAAGCCATCTCCCACAACACCGTTGACGCCTACCGCCGCACCGGAGCCGGGTACCCCATCGACAAGGTCCCTGCACCGTCGCCGTACCTAGCTGATGGGAAGACGTCGACGTCCAGTAGCACGAGTACCCTCGACAAACTAGACGAAAGAAGTGTGCGACGAAGAAGAAACCTACCCTCAAGATGCCACCAGGAGTAAGGATATCAAAGAGAGTGAGGGCGGGTGCTCCAACCGAAATGCCTCCTGGAGTCTCAACAAGGTCAGCGAAAAGGCAACTCATAGCAGAACAAGGTAAAGGTAATGGCCATGAAGAACTGCCTCTAGAAACAGAAAACAATGGTGATGAAGATGTGGGCAGTGGACATTTGCTTCAAGATAATGATGTGAACAGGCCCCCGAGCCCGGTGATGGACTGGTCATATGGACATGATGCCAACCATAAAGAGCAACCTGCACAGCAAACCAATTCTGATGTTGAAGTACCTATACGAAGAGGCACAAGAAAATCAAGGCCACCAACTGCAGGAATAATGCTTGACAAGATGACCAAAGCTATGGGAAGAATGCCCATTGCTGTTGCCGAAGGGAAGAAAAGGCCAGATGAACCGGTGCAAGCTGCCAAGTTTGCATCAGAGGCTGGTGTTATCATTAGGACTAAAGTTCCTGTCTTCCCTCATTGGAAGCAGTACAAGGATGATGAAGGCTATATTAACAACTTCATGGGCAAGTTATCTGTCAGGTTGGCCATTAACCAAAAAAACCAGCCAACAAGGGATGCTTGTGCTGATGTATTGCAGAAAGGGATACGACAAACACGGTATAATTTGAAGAAGGCCTACTTCAATGGAGTACCTGCTAACGAGATTAGAACTACCTCTCCCATAAGTAGCATGACTGATGAACAGTGGCTGGAACTTGTTGCAAAGTGGTCAAATCCAAAGAATATGCAAATCTCTGAACAGAACAAGCAAAACCGGCTTAATGTTAGGTTCCATCAGGCTACGGGATCTCGCAGCTATGCTGCACACTTGCACGCTTACAAGGAGAAGAACAAGGTTGTAGAGCTTGATGTTGTGGATGCCTTTGAGGACTGCCATACCAGTAGGGAAAAAGGTCTAAGTGATGCTGCCAAAGATGCAATTTCAAGTATGAAAGCTATTATGGAAGAACCTGTACCTGATGGTGAGACACCAAGAACTAGTGCAGAAGTTGTGTCCAAGGTTCTCTCTCGGGACAATTCCAATACCACGTTTTTGAAAAATGCTGGTCTGCAGATGAGCTCCAAGAAATCAGTGACACCGACAGAAGCAGCACTTCAGGAAGAACTTGCAGCTGAAAAGCAAAGTTCAGCCATTCTCCATGCAGAAGTTGTCGAACTAAAAGAACAAGCAAATCTTGCAAATGAAGCGCTGGCAAAGACTCAAAAGGAGTTGGCAGAGTTCAAGCAGCAGCAGGAAGAGAACAATTTGCTCCTTCGACGTATCTTGAGCCTTTCCCAGGGTAACTTAAATCTGTCCTAGTCTCCTTTATGATCTTCTGCACTGTGATGAACTCCATCTACTTATATTAGTTGTTTGAT GGTTCTGTGAACTTATTGTCATGTGGTGGACTTGATTA TGTGAAATGATGTTTGGTGCTATGGTGGACTTAATGTCCTCCTATGGCAAACTTTTGTGGACTTAATGTGAACATATGTGTGCTAGGTTC TGAACTTTTTTGTAATATGGTGCTATGTGAAGTTGG ] [+] EMBL CB097101 [ GGTTGTAGAGCTTGATGCTGTGGATGCCTTTGAGGACTGCCATACCAGTAGGGAAAAAGGTCTAAGTGATGCTGCCAAAGATGCAATTTCAAGTATGAAAGCTATTATGGAAGAACCTGTACCTGATGGTGAGACACCAAGAACTAGTGCAGAAGTTGTGTCCAAGGTTCTCTCTCGGGACAACTCCAATACCACGTTTTTGAAAAATGCTGGTCTGCAGATGAGCTCCAAGAAATCAGTGACACCGACAGAAGCAGCACTTCAGGAAGAACTTGCAGCTGAAAAGCAAAGTTCAGCCATTCTCCATGCAGAAGTTGTCGAACTAAAAGAACAAGCAAATCTTGCAAATGAAGCACTGGCAAAGACTCAAAAGGAGTTGGCAGAGTTTAAGCAGCAGCAGGAAGAGAACAATTTGCTCCTTCGACGTATCTTGAGCCTTTCCCAGGGTAACTTAAATCTGTCCTAGTCTCTTTTATGATCTTCTGCACTGTGATGAACTCCATCTACTTATATTAGTTGGTTGATGGGTTCTGTGAACTTATTGTCATGTGGTGGACTTGATTA TGTGAAATGA ] [+] EMBL BI803043 [ AGATGAGCTCCAAGAAATCAGTGACACCGACAGAAGCAGCACTTCAGGAAGAACTTGCAGCTGAAAAGCAAAGTTCAGCCATTCTCCATGCAGAAGTTGTCGAACTAAAAGAACAAGCAAATCTTGCAAATGAAGCACTGGCAAAGACTCAAAAGGAGTTGGCAGAGTTCAAGCAGCAGCAGGAAGAGAACAATTTGCTCCTTCGACGTATCTTGAGCCTTTCCCAGGGTAACTTAAATCTGTCCTAGTCTCCTTTATGATCTTCTGCACTGTGATGAACTCTATCTACTTATATTAGTTGTTTGAT GGTTCTGTGAACTTATTGTCATGTGGTGGACTTGATTACTGTGAAATGATGTTTGGTGCTATGGTGGACTTAATGTCATCCTATGGCAAACTTTTGTGGACTTAATGTGAACATATGTGTGCTAGGTTCTATGAACTTTTTTGTAATATGGTGCTATGTGAAGTTGGTATATGTGATATATGTTGATGTTGGGCCTATTTGTAAAAAA] consensusID : consensus_7212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [AGCTCTGAGTCAGAGCTTCTGGAGTNCGGGTGGTCCGCCGGATGAGACCGGGAGGGATCTTTGATCCGGGCCGATCGCAGCCGGTCACGGAGCTCGAGGCGGCGGCGGGCGGCGCCCCGTCGACCTGGAGAGGGACATGGACAAGCTGCAGGGGTCGTGTGGAGTGCATAATTGACACTGGCGGCGAGCCGACAGTGCGCCCCAGCCCTAGGATGACCCAAATGAAGCACTAGCAAGACTTGAAAGGAGTTAGCGGAGTTCAAGCTGCAGCAGGAAGAGAACNATCTGCTCCTTCGACATATCTTGAGCCTATCCCAGAGTAACTTAAAGTTGTTCTAGTCTCCTTTCTTATCTTATGCACTTTGATGAACTCCATCTACTTATTTTAGTTGTGTTGATGGTTCTATGAGCTTACTGTCATGTGGTGGACTTGGTTATGTAAAATGATGTTTGGTGCTATGGTGGACTTAATTATCATCTTGTGGTAAACTTTTGTGGCCTTAAATGTGAACATATGTGTACTATGTTCTGTGAAAAAAAA] [+] EMBL BM037810 [AGCTCTGAGTCAGAGCTTCTGGAGTNCGGGTGGTCCGCCGGATGAGACCGGGAGGGATCTTTGATCCGGGCCGATCGCAGCCGGTCACGGAGCTCGAGGCGGCGGCGGGCGGCGCCCCGTCGACCTGGAGAGGGACATGGACAAGCTGCAGGGGTCGTGTGGAGTGCATAATTGACACTGGCGGCGAGCCGACAGTGCGCCCCAGCCCTAGGATGACCCAAATGAAGCACTAGCAAGACTTGAAAGGAGTTAGCGGAGTTCAAGCTGCAGCAGGAAGAGAACNATCTGCTCCTTCGACATATCTTGAGCCTATCCCAGAGTAACTTAAAGTTGTTCTAGTCTCCTTTCTTATCTTATGCACTTTGATGAACTCCATCTACTTATTTTAGTTGTGTTGATGGTTCTATGAGCTTACTGTCATGTGGTGGACTTGGTTATGTAAAATGATGTTTGGTGCTATGGTGGACTTAATTATCATCTTGTGGTAAACTTTTGTGGCCTTAAATGTGAACATATGTGTACTATGTTCTGTGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7212#0 AAATCCAGCCGCCACACCATCGGGGCGCCGCTCTACCAGAGCCGCCGCCGACTACCGCCG 60 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 CACCGGAGCCTTCCCCCGCAACCCCGTCGACGACGACCGCTGCGCCGGAGCCTTCCCGTG 120 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 CAAACCGATCGACGACGACCGCTGCACCAGATCCGTCCCCTACTTCCTCGTCGTCGACAG 180 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 CCGCCGCAACGACGCCTTCCGCTGCAACCCCGTCGACGACGACCGCTGCACCAGATCCTT 240 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 CCCCCACTACGCCGTCGACGACTTCCACTGCATCGGAGCCGGTACCCCGTCGACGACTAC 300 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 TGCCGCACCGAAGCCATCTCCCACAACACCGTTGACGCCTACCGCCGCACCGGAGCCGGG 360 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 TACCCCATCGACAAGGTCCCTGCACCGTCGCCGTACCTAGCTGATGGGAAGACGTCGACG 420 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 TCCAGTAGCACGAGTACCCTCGACAAACTAGACGAAAGAAGTGTGCGACGAAGAAGAAAC 480 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 CTACCCTCAAGATGCCACCAGGAGTAAGGATATCAAAGAGAGTGAGGGCGGGTGCTCCAA 540 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 CCGAAATGCCTCCTGGAGTCTCAACAAGGTCAGCGAAAAGGCAACTCATAGCAGAACAAG 600 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 GTAAAGGTAATGGCCATGAAGAACTGCCTCTAGAAACAGAAAACAATGGTGATGAAGATG 660 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 TGGGCAGTGGACATTTGCTTCAAGATAATGATGTGAACAGGCCCCCGAGCCCGGTGATGG 720 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 ACTGGTCATATGGACATGATGCCAACCATAAAGAGCAACCTGCACAGCAAACCAATTCTG 780 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 ATGTTGAAGTACCTATACGAAGAGGCACAAGAAAATCAAGGCCACCAACTGCAGGAATAA 840 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 TGCTTGACAAGATGACCAAAGCTATGGGAAGAATGCCCATTGCTGTTGCCGAAGGGAAGA 900 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 AAAGGCCAGATGAACCGGTGCAAGCTGCCAAGTTTGCATCAGAGGCTGGTGTTATCATTA 960 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 GGACTAAAGTTCCTGTCTTCCCTCATTGGAAGCAGTACAAGGATGATGAAGGCTATATTA 1020 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 ACAACTTCATGGGCAAGTTATCTGTCAGGTTGGCCATTAACCAAAAAAACCAGCCAACAA 1080 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 GGGATGCTTGTGCTGATGTATTGCAGAAAGGGATACGACAAACACGGTATAATTTGAAGA 1140 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 AGGCCTACTTCAATGGAGTACCTGCTAACGAGATTAGAACTACCTCTCCCATAAGTAGCA 1200 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 TGACTGATGAACAGTGGCTGGAACTTGTTGCAAAGTGGTCAAATCCAAAGAATATGCAAA 1260 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 TCTCTGAACAGAACAAGCAAAACCGGCTTAATGTTAGGTTCCATCAGGCTACGGGATCTC 1320 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 GCAGCTATGCTGCACACTTGCACGCTTACAAGGAGAAGAACAAGGTTGTAGAGCTTGATG 1380 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 TTGTGGATGCCTTTGAGGACTGCCATACCAGTAGGGAAAAAGGTCTAAGTGATGCTGCCA 1440 consensus_7212#1 ------------------------------------------------------------ consensus_7212#0 AAGATGCAATTTCAAGTATGAAAGCTATTATGGAAGAACCTGTACC-TGATGGTGAGACA 1499 consensus_7212#1 ----------------------AGCTCTGA-GTCAGAGCTTCTGGAGTNCGGGTGGTCCG 37 **** * * * *** * * * * **** * consensus_7212#0 CCAAGAACTAGTGCAGAAGTTGTGTCCAAGGTTCTCTCTCGGGACAATTCCAATACCACG 1559 consensus_7212#1 CC--GGATGAGACCGGGAGGGATCTTTGA--------TCCGGGCCGATCGCAGC----CG 83 ** * * ** * * ** * * * **** * ** ** ** consensus_7212#0 TTTTTGAAAAATGCTG-GTCTGCAGATGAGCTCCAAGAAATCAGTGACACCGACAGAAGC 1618 consensus_7212#1 GTCACGGAGCTCGAGGCGGCGGCGGGCGGCGCCCCGTCGACCTG-GAGAGGGACATGGAC 142 * * * * * * * ** * * ** * * * ** * **** * consensus_7212#0 AGCACTTCAGGAAGAACTTGCAGCTGAAAAGCAAAGTTCAGCCATTCTCCATGCAGAAGT 1678 consensus_7212#1 AA-GCTGCAGG--GGTCGTG----TGGAGTGCATAATTGACACTGGCGGCGAGCCGACAG 195 * ** **** * * ** ** * *** * ** * * * * ** ** consensus_7212#0 TGTCGAACTAAAAGAACAAGCAAATCTTGCAAATGAAGCACTGGCAAAGACTCAAAAGGA 1738 consensus_7212#1 TGC---GCCCCAGCCCTAGGATGACC---CAAATGAAGCACTAGCAA-GACTTGAAAGGA 248 ** * * * * * * ************* **** **** ****** consensus_7212#0 GTTGGCAGAGTTCAAGCAGCAGCAGGAAGAGAACAATTTGCTCCTTCGACGTATCTTGAG 1798 consensus_7212#1 GTTAGCGGAGTTCAAGCTGCAGCAGGAAGAGAACNATCTGCTCCTTCGACATATCTTGAG 308 *** ** ********** **************** ** ************ ********* consensus_7212#0 CCTTTCCCAGGGTAACTTAAATCTGTCCTAGTCTCCTTTATGATCTTCTGCACTGTGATG 1858 consensus_7212#1 CCTATCCCAGAGTAACTTAAAGTTGTTCTAGTCTCCTTTCTTATCTTATGCACTTTGATG 368 *** ****** ********** *** ************ * ***** ****** ***** consensus_7212#0 AACTCCATCTACTTATATTAGTTGT-TTGATGGTTCTGTGAACTTATTGTCATGTGGTGG 1917 consensus_7212#1 AACTCCATCTACTTATTTTAGTTGTGTTGATGGTTCTATGAGCTTACTGTCATGTGGTGG 428 **************** ******** *********** *** **** ************* consensus_7212#0 ACTTGATTATGTGAAATGATGTTTGGTGCTATGGTGGACTTAAT-GTCCTCCTATGGCAA 1976 consensus_7212#1 ACTTGGTTATGTAAAATGATGTTTGGTGCTATGGTGGACTTAATTATCATCTTGTGGTAA 488 ***** ****** ******************************* ** ** * *** ** consensus_7212#0 ACTTTTGTGGACTTAA-TGTGAACATATGTGTGCTAGGTTCTGAACTTTTTTGTAATATG 2035 consensus_7212#1 ACTTTTGTGGCCTTAAATGTGAACATATGTGTACTATGTTCTG--------TGAAAAAAA 540 ********** ***** *************** *** ****** ** ** * consensus_7212#0 GTGCTATGTGAAGTTGGTATATGTGATATATGTTGATGTTGGGCCTATTTGTAAAAAA 2093 consensus_7212#1 A--------------------------------------------------------- 541 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||