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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2093 fasta sequence
[AAATCCAGCCGCCACACCATCGGGGCGCCGCTCTACCAGAGCCGCCGCCGACTACCGCCGCACCGGAGCCTTCCCCCGCAACCCCGTCGACGACGACCGCTGCGCCGGAGCCTTCCCGTGCAAACCGATCGACGACGACCGCTGCACCAGATCCGTCCCCTACTTCCTCGTCGTCGACAGCCGCCGCAACGACGCCTTCCGCTGCAACCCCGTCGACGACGACCGCTGCACCAGATCCTTCCCCCACTACGCCGTCGACGACTTCCACTGCATCGGAGCCGGTACCCCGTCGACGACTACTGCCGCACCGAAGCCATCTCCCACAACACCGTTGACGCCTACCGCCGCACCGGAGCCGGGTACCCCATCGACAAGGTCCCTGCACCGTCGCCGTACCTAGCTGATGGGAAGACGTCGACGTCCAGTAGCACGAGTACCCTCGACAAACTAGACGAAAGAAGTGTGCGACGAAGAAGAAACCTACCCTCAAGATGCCACCAGGAGTAAGGATATCAAAGAGAGTGAGGGCGGGTGCTCCAACCGAAATGCCTCCTGGAGTCTCAACAAGGTCAGCGAAAAGGCAACTCATAGCAGAACAAGGTAAAGGTAATGGCCATGAAGAACTGCCTCTAGAAACAGAAAACAATGGTGATGAAGATGTGGGCAGTGGACATTTGCTTCAAGATAATGATGTGAACAGGCCCCCGAGCCCGGTGATGGACTGGTCATATGGACATGATGCCAACCATAAAGAGCAACCTGCACAGCAAACCAATTCTGATGTTGAAGTACCTATACGAAGAGGCACAAGAAAATCAAGGCCACCAACTGCAGGAATAATGCTTGACAAGATGACCAAAGCTATGGGAAGAATGCCCATTGCTGTTGCCGAAGGGAAGAAAAGGCCAGATGAACCGGTGCAAGCTGCCAAGTTTGCATCAGAGGCTGGTGTTATCATTAGGACTAAAGTTCCTGTCTTCCCTCATTGGAAGCAGTACAAGGATGATGAAGGCTATATTAACAACTTCATGGGCAAGTTATCTGTCAGGTTGGCCATTAACCAAAAAAACCAGCCAACAAGGGATGCTTGTGCTGATGTATTGCAGAAAGGGATACGACAAACACGGTATAATTTGAAGAAGGCCTACTTCAATGGAGTACCTGCTAACGAGATTAGAACTACCTCTCCCATAAGTAGCATGACTGATGAACAGTGGCTGGAACTTGTTGCAAAGTGGTCAAATCCAAAGAATATGCAAATCTCTGAACAGAACAAGCAAAACCGGCTTAATGTTAGGTTCCATCAGGCTACGGGATCTCGCAGCTATGCTGCACACTTGCACGCTTACAAGGAGAAGAACAAGGTTGTAGAGCTTGATGTTGTGGATGCCTTTGAGGACTGCCATACCAGTAGGGAAAAAGGTCTAAGTGATGCTGCCAAAGATGCAATTTCAAGTATGAAAGCTATTATGGAAGAACCTGTACCTGATGGTGAGACACCAAGAACTAGTGCAGAAGTTGTGTCCAAGGTTCTCTCTCGGGACAATTCCAATACCACGTTTTTGAAAAATGCTGGTCTGCAGATGAGCTCCAAGAAATCAGTGACACCGACAGAAGCAGCACTTCAGGAAGAACTTGCAGCTGAAAAGCAAAGTTCAGCCATTCTCCATGCAGAAGTTGTCGAACTAAAAGAACAAGCAAATCTTGCAAATGAAGCACTGGCAAAGACTCAAAAGGAGTTGGCAGAGTTCAAGCAGCAGCAGGAAGAGAACAATTTGCTCCTTCGACGTATCTTGAGCCTTTCCCAGGGTAACTTAAATCTGTCCTAGTCTCCTTTATGATCTTCTGCACTGTGATGAACTCCATCTACTTATATTAGTTGTTTGAT-GGTTCTGTGAACTTATTGTCATGTGGTGGACTTGATTA-TGTGAAATGATGTTTGGTGCTATGGTGGACTTAATGTCCTCCTATGGCAAACTTTTGTGGACTTAATGTGAACATATGTGTGCTAGGTTC--TGAACTTTTTTGTAATATGGTGCTATGTGAAGTTGGTATATGTGATATATGTTGATGTTGGGCCTATTTGTAAAAAA]
[+] EMBL AK107262 [AAATCCAGCCGCCACACCATCGGGGCGCCGCTCTACCAGAGCCGCCGCCGACTACCGCCGCACCGGAGCCTTCCCCCGCAACCCCGTCGACGACGACCGCTGCGCCGGAGCCTTCCCGTGCAAACCGATCGACGACGACCGCTGCACCAGATCCGTCCCCTACTTCCTCGTCGTCGACAGCCGCCGCAACGACGCCTTCCGCTGCAACCCCGTCGACGACGACCGCTGCACCAGATCCTTCCCCCACTACGCCGTCGACGACTTCCACTGCATCGGAGCCGGTACCCCGTCGACGACTACTGCCGCACCGAAGCCATCTCCCACAACACCGTTGACGCCTACCGCCGCACCGGAGCCGGGTACCCCATCGACAAGGTCCCTGCACCGTCGCCGTACCTAGCTGATGGGAAGACGTCGACGTCCAGTAGCACGAGTACCCTCGACAAACTAGACGAAAGAAGTGTGCGACGAAGAAGAAACCTACCCTCAAGATGCCACCAGGAGTAAGGATATCAAAGAGAGTGAGGGCGGGTGCTCCAACCGAAATGCCTCCTGGAGTCTCAACAAGGTCAGCGAAAAGGCAACTCATAGCAGAACAAGGTAAAGGTAATGGCCATGAAGAACTGCCTCTAGAAACAGAAAACAATGGTGATGAAGATGTGGGCAGTGGACATTTGCTTCAAGATAATGATGTGAACAGGCCCCCGAGCCCGGTGATGGACTGGTCATATGGACATGATGCCAACCATAAAGAGCAACCTGCACAGCAAACCAATTCTGATGTTGAAGTACCTATACGAAGAGGCACAAGAAAATCAAGGCCACCAACTGCAGGAATAATGCTTGACAAGATGACCAAAGCTATGGGAAGAATGCCCATTGCTGTTGCCGAAGGGAAGAAAAGGCCAGATGAACCGGTGCAAGCTGCCAAGTTTGCATCAGAGGCTGGTGTTATCATTAGGACTAAAGTTCCTGTCTTCCCTCATTGGAAGCAGTACAAGGATGATGAAGGCTATATTAACAACTTCATGGGCAAGTTATCTGTCAGGTTGGCCATTAACCAAAAAAACCAGCCAACAAGGGATGCTTGTGCTGATGTATTGCAGAAAGGGATACGACAAACACGGTATAATTTGAAGAAGGCCTACTTCAATGGAGTACCTGCTAACGAGATTAGAACTACCTCTCCCATAAGTAGCATGACTGATGAACAGTGGCTGGAACTTGTTGCAAAGTGGTCAAATCCAAAGAATATGCAAATCTCTGAACAGAACAAGCAAAACCGGCTTAATGTTAGGTTCCATCAGGCTACGGGATCTCGCAGCTATGCTGCACACTTGCACGCTTACAAGGAGAAGAACAAGGTTGTAGAGCTTGATGTTGTGGATGCCTTTGAGGACTGCCATACCAGTAGGGAAAAAGGTCTAAGTGATGCTGCCAAAGATGCAATTTCAAGTATGAAAGCTATTATGGAAGAACCTGTACCTGATGGTGAGACACCAAGAACTAGTGCAGAAGTTGTGTCCAAGGTTCTCTCTCGGGACAATTCCAATACCACGTTTTTGAAAAATGCTGGTCTGCAGATGAGCTCCAAGAAATCAGTGACACCGACAGAAGCAGCACTTCAGGAAGAACTTGCAGCTGAAAAGCAAAGTTCAGCCATTCTCCATGCAGAAGTTGTCGAACTAAAAGAACAAGCAAATCTTGCAAATGAAGCGCTGGCAAAGACTCAAAAGGAGTTGGCAGAGTTCAAGCAGCAGCAGGAAGAGAACAATTTGCTCCTTCGACGTATCTTGAGCCTTTCCCAGGGTAACTTAAATCTGTCCTAGTCTCCTTTATGATCTTCTGCACTGTGATGAACTCCATCTACTTATATTAGTTGTTTGAT GGTTCTGTGAACTTATTGTCATGTGGTGGACTTGATTA TGTGAAATGATGTTTGGTGCTATGGTGGACTTAATGTCCTCCTATGGCAAACTTTTGTGGACTTAATGTGAACATATGTGTGCTAGGTTC TGAACTTTTTTGTAATATGGTGCTATGTGAAGTTGG ]
[+] EMBL CB097101 [ GGTTGTAGAGCTTGATGCTGTGGATGCCTTTGAGGACTGCCATACCAGTAGGGAAAAAGGTCTAAGTGATGCTGCCAAAGATGCAATTTCAAGTATGAAAGCTATTATGGAAGAACCTGTACCTGATGGTGAGACACCAAGAACTAGTGCAGAAGTTGTGTCCAAGGTTCTCTCTCGGGACAACTCCAATACCACGTTTTTGAAAAATGCTGGTCTGCAGATGAGCTCCAAGAAATCAGTGACACCGACAGAAGCAGCACTTCAGGAAGAACTTGCAGCTGAAAAGCAAAGTTCAGCCATTCTCCATGCAGAAGTTGTCGAACTAAAAGAACAAGCAAATCTTGCAAATGAAGCACTGGCAAAGACTCAAAAGGAGTTGGCAGAGTTTAAGCAGCAGCAGGAAGAGAACAATTTGCTCCTTCGACGTATCTTGAGCCTTTCCCAGGGTAACTTAAATCTGTCCTAGTCTCTTTTATGATCTTCTGCACTGTGATGAACTCCATCTACTTATATTAGTTGGTTGATGGGTTCTGTGAACTTATTGTCATGTGGTGGACTTGATTA TGTGAAATGA ]
[+] EMBL BI803043 [ AGATGAGCTCCAAGAAATCAGTGACACCGACAGAAGCAGCACTTCAGGAAGAACTTGCAGCTGAAAAGCAAAGTTCAGCCATTCTCCATGCAGAAGTTGTCGAACTAAAAGAACAAGCAAATCTTGCAAATGAAGCACTGGCAAAGACTCAAAAGGAGTTGGCAGAGTTCAAGCAGCAGCAGGAAGAGAACAATTTGCTCCTTCGACGTATCTTGAGCCTTTCCCAGGGTAACTTAAATCTGTCCTAGTCTCCTTTATGATCTTCTGCACTGTGATGAACTCTATCTACTTATATTAGTTGTTTGAT GGTTCTGTGAACTTATTGTCATGTGGTGGACTTGATTACTGTGAAATGATGTTTGGTGCTATGGTGGACTTAATGTCATCCTATGGCAAACTTTTGTGGACTTAATGTGAACATATGTGTGCTAGGTTCTATGAACTTTTTTGTAATATGGTGCTATGTGAAGTTGGTATATGTGATATATGTTGATGTTGGGCCTATTTGTAAAAAA]
consensusID : consensus_7212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[AGCTCTGAGTCAGAGCTTCTGGAGTNCGGGTGGTCCGCCGGATGAGACCGGGAGGGATCTTTGATCCGGGCCGATCGCAGCCGGTCACGGAGCTCGAGGCGGCGGCGGGCGGCGCCCCGTCGACCTGGAGAGGGACATGGACAAGCTGCAGGGGTCGTGTGGAGTGCATAATTGACACTGGCGGCGAGCCGACAGTGCGCCCCAGCCCTAGGATGACCCAAATGAAGCACTAGCAAGACTTGAAAGGAGTTAGCGGAGTTCAAGCTGCAGCAGGAAGAGAACNATCTGCTCCTTCGACATATCTTGAGCCTATCCCAGAGTAACTTAAAGTTGTTCTAGTCTCCTTTCTTATCTTATGCACTTTGATGAACTCCATCTACTTATTTTAGTTGTGTTGATGGTTCTATGAGCTTACTGTCATGTGGTGGACTTGGTTATGTAAAATGATGTTTGGTGCTATGGTGGACTTAATTATCATCTTGTGGTAAACTTTTGTGGCCTTAAATGTGAACATATGTGTACTATGTTCTGTGAAAAAAAA]
[+] EMBL BM037810 [AGCTCTGAGTCAGAGCTTCTGGAGTNCGGGTGGTCCGCCGGATGAGACCGGGAGGGATCTTTGATCCGGGCCGATCGCAGCCGGTCACGGAGCTCGAGGCGGCGGCGGGCGGCGCCCCGTCGACCTGGAGAGGGACATGGACAAGCTGCAGGGGTCGTGTGGAGTGCATAATTGACACTGGCGGCGAGCCGACAGTGCGCCCCAGCCCTAGGATGACCCAAATGAAGCACTAGCAAGACTTGAAAGGAGTTAGCGGAGTTCAAGCTGCAGCAGGAAGAGAACNATCTGCTCCTTCGACATATCTTGAGCCTATCCCAGAGTAACTTAAAGTTGTTCTAGTCTCCTTTCTTATCTTATGCACTTTGATGAACTCCATCTACTTATTTTAGTTGTGTTGATGGTTCTATGAGCTTACTGTCATGTGGTGGACTTGGTTATGTAAAATGATGTTTGGTGCTATGGTGGACTTAATTATCATCTTGTGGTAAACTTTTGTGGCCTTAAATGTGAACATATGTGTACTATGTTCTGTGAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7212#0 AAATCCAGCCGCCACACCATCGGGGCGCCGCTCTACCAGAGCCGCCGCCGACTACCGCCG 60
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 CACCGGAGCCTTCCCCCGCAACCCCGTCGACGACGACCGCTGCGCCGGAGCCTTCCCGTG 120
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 CAAACCGATCGACGACGACCGCTGCACCAGATCCGTCCCCTACTTCCTCGTCGTCGACAG 180
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 CCGCCGCAACGACGCCTTCCGCTGCAACCCCGTCGACGACGACCGCTGCACCAGATCCTT 240
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 CCCCCACTACGCCGTCGACGACTTCCACTGCATCGGAGCCGGTACCCCGTCGACGACTAC 300
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 TGCCGCACCGAAGCCATCTCCCACAACACCGTTGACGCCTACCGCCGCACCGGAGCCGGG 360
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 TACCCCATCGACAAGGTCCCTGCACCGTCGCCGTACCTAGCTGATGGGAAGACGTCGACG 420
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 TCCAGTAGCACGAGTACCCTCGACAAACTAGACGAAAGAAGTGTGCGACGAAGAAGAAAC 480
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 CTACCCTCAAGATGCCACCAGGAGTAAGGATATCAAAGAGAGTGAGGGCGGGTGCTCCAA 540
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 CCGAAATGCCTCCTGGAGTCTCAACAAGGTCAGCGAAAAGGCAACTCATAGCAGAACAAG 600
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 GTAAAGGTAATGGCCATGAAGAACTGCCTCTAGAAACAGAAAACAATGGTGATGAAGATG 660
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 TGGGCAGTGGACATTTGCTTCAAGATAATGATGTGAACAGGCCCCCGAGCCCGGTGATGG 720
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 ACTGGTCATATGGACATGATGCCAACCATAAAGAGCAACCTGCACAGCAAACCAATTCTG 780
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 ATGTTGAAGTACCTATACGAAGAGGCACAAGAAAATCAAGGCCACCAACTGCAGGAATAA 840
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 TGCTTGACAAGATGACCAAAGCTATGGGAAGAATGCCCATTGCTGTTGCCGAAGGGAAGA 900
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 AAAGGCCAGATGAACCGGTGCAAGCTGCCAAGTTTGCATCAGAGGCTGGTGTTATCATTA 960
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 GGACTAAAGTTCCTGTCTTCCCTCATTGGAAGCAGTACAAGGATGATGAAGGCTATATTA 1020
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 ACAACTTCATGGGCAAGTTATCTGTCAGGTTGGCCATTAACCAAAAAAACCAGCCAACAA 1080
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 GGGATGCTTGTGCTGATGTATTGCAGAAAGGGATACGACAAACACGGTATAATTTGAAGA 1140
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 AGGCCTACTTCAATGGAGTACCTGCTAACGAGATTAGAACTACCTCTCCCATAAGTAGCA 1200
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 TGACTGATGAACAGTGGCTGGAACTTGTTGCAAAGTGGTCAAATCCAAAGAATATGCAAA 1260
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 TCTCTGAACAGAACAAGCAAAACCGGCTTAATGTTAGGTTCCATCAGGCTACGGGATCTC 1320
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 GCAGCTATGCTGCACACTTGCACGCTTACAAGGAGAAGAACAAGGTTGTAGAGCTTGATG 1380
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 TTGTGGATGCCTTTGAGGACTGCCATACCAGTAGGGAAAAAGGTCTAAGTGATGCTGCCA 1440
consensus_7212#1 ------------------------------------------------------------
consensus_7212#0 AAGATGCAATTTCAAGTATGAAAGCTATTATGGAAGAACCTGTACC-TGATGGTGAGACA 1499
consensus_7212#1 ----------------------AGCTCTGA-GTCAGAGCTTCTGGAGTNCGGGTGGTCCG 37
**** * * * *** * * * * **** *
consensus_7212#0 CCAAGAACTAGTGCAGAAGTTGTGTCCAAGGTTCTCTCTCGGGACAATTCCAATACCACG 1559
consensus_7212#1 CC--GGATGAGACCGGGAGGGATCTTTGA--------TCCGGGCCGATCGCAGC----CG 83
** * * ** * * ** * * * **** * ** ** **
consensus_7212#0 TTTTTGAAAAATGCTG-GTCTGCAGATGAGCTCCAAGAAATCAGTGACACCGACAGAAGC 1618
consensus_7212#1 GTCACGGAGCTCGAGGCGGCGGCGGGCGGCGCCCCGTCGACCTG-GAGAGGGACATGGAC 142
* * * * * * * ** * * ** * * * ** * **** *
consensus_7212#0 AGCACTTCAGGAAGAACTTGCAGCTGAAAAGCAAAGTTCAGCCATTCTCCATGCAGAAGT 1678
consensus_7212#1 AA-GCTGCAGG--GGTCGTG----TGGAGTGCATAATTGACACTGGCGGCGAGCCGACAG 195
* ** **** * * ** ** * *** * ** * * * * ** **
consensus_7212#0 TGTCGAACTAAAAGAACAAGCAAATCTTGCAAATGAAGCACTGGCAAAGACTCAAAAGGA 1738
consensus_7212#1 TGC---GCCCCAGCCCTAGGATGACC---CAAATGAAGCACTAGCAA-GACTTGAAAGGA 248
** * * * * * * ************* **** **** ******
consensus_7212#0 GTTGGCAGAGTTCAAGCAGCAGCAGGAAGAGAACAATTTGCTCCTTCGACGTATCTTGAG 1798
consensus_7212#1 GTTAGCGGAGTTCAAGCTGCAGCAGGAAGAGAACNATCTGCTCCTTCGACATATCTTGAG 308
*** ** ********** **************** ** ************ *********
consensus_7212#0 CCTTTCCCAGGGTAACTTAAATCTGTCCTAGTCTCCTTTATGATCTTCTGCACTGTGATG 1858
consensus_7212#1 CCTATCCCAGAGTAACTTAAAGTTGTTCTAGTCTCCTTTCTTATCTTATGCACTTTGATG 368
*** ****** ********** *** ************ * ***** ****** *****
consensus_7212#0 AACTCCATCTACTTATATTAGTTGT-TTGATGGTTCTGTGAACTTATTGTCATGTGGTGG 1917
consensus_7212#1 AACTCCATCTACTTATTTTAGTTGTGTTGATGGTTCTATGAGCTTACTGTCATGTGGTGG 428
**************** ******** *********** *** **** *************
consensus_7212#0 ACTTGATTATGTGAAATGATGTTTGGTGCTATGGTGGACTTAAT-GTCCTCCTATGGCAA 1976
consensus_7212#1 ACTTGGTTATGTAAAATGATGTTTGGTGCTATGGTGGACTTAATTATCATCTTGTGGTAA 488
***** ****** ******************************* ** ** * *** **
consensus_7212#0 ACTTTTGTGGACTTAA-TGTGAACATATGTGTGCTAGGTTCTGAACTTTTTTGTAATATG 2035
consensus_7212#1 ACTTTTGTGGCCTTAAATGTGAACATATGTGTACTATGTTCTG--------TGAAAAAAA 540
********** ***** *************** *** ****** ** ** *
consensus_7212#0 GTGCTATGTGAAGTTGGTATATGTGATATATGTTGATGTTGGGCCTATTTGTAAAAAA 2093
consensus_7212#1 A--------------------------------------------------------- 541
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||