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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1694 fasta sequence
[TCCCATCCCCCGATTCGCCACCGCGAATCCCACCACCACCCGCAGATCTCCGCCTCGGCGCCATTGCCCACCCTCCACGCCCCCGCCAGATTCGCCCAGATCCACAGCCGGGTGCATCCGGCGGCGTGGCTGGGGCGCCCTCGATCGGGAAGCTTTGATCTTCGTACCCTTTTTGCGGTGGGCGGGCGGCGGGCGGCGGAGGAGGAGGAGATGGGTGTCGGCGGGGAGAAGTTCCAGCTGGGGACGGTGGGGGCGCTGAGCCTCTCCGTGGTGTCATCCGTCTCCATTGTCATCTGCAACAAGGCGCTCATGAGCTCCCTCGGCTTCAACTTTGCCACTACCTTGACGAGTTGGCATCTTCTTGTCACATTTTGCTCCCTCCATGTAGCATTATGGATGAAGTTCTTCGAGCACAAGCCTTTCGACTCGAGAACTGTCATGGGATTTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTTGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGGTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCATTGTATTATCGTGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCTGTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGGTTATGTTTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGGAATGGTCTTATACTCATACTTCTGCACATTGGAGGGCCAGCAAAAAAACGCCGAAGTCTCCCCACAACAGGCGAAAGAAGGCGATTCGGCTCCTTTGATCTCAGACTCTCTGAGCAAAGTTGAGAATGGAGGTGGAGTGGTTGATGATGAGCCTCTCAAGGTACCGATGTGGAGCTCAAAGTACTCAAGGGCGTGAAAATACCTTCCTTTTAGAAGGCGGCATTATACAGGATTCAATTTGGTAGGCGGATAGTAGGGTTGGAAGCCAACCCAGATTGTAATGAACATTCCAGTTACATTTTTGGGTTTATTTAACATTACTATCTAGTATCTACTAGCAGTAAAAGGGTTCTTGGGAGGATTTTACCTTCAAGATAGCAGATCTGCCTTGAAACTTAGACAACAGATATTGTATGATTGTATCTGGATATGCTCCACATCTTTCTCACTGTAACTTCCTATGGGAACATAGATCCACAGATAGACTTCATTCTTTTGTACCAAAGATCCAGAGAACTAGAGATCTGCAAGGTTCAAGTTTGTGACTGTAAGTTTATGTTTACTTTGGACCCAGTGATGGAGCTTTTGTATATTTAGGACCAAGTGCAAAGAGGG]
[+] EMBL AK065618 [TCCCATCCCCCGATTCGCCACCGCGAATCCCACCACCACCCGCAGATCTCCGCCTCGGCGCCATTGCCCACCCTCCACGCCCCCGCCAGATTCGCCCAGATCCACAGCCGGGTGCATCCGGCGGCGTGGCTGGGGCGCCCTCGATCGGGAAGCTTTGATCTTCGTACCCTTTTTGCGGTGGGCGGGCGGCGGGCGGCGGAGGAGGAGGAGATGGGTGTCGGCGGGGAGAAGTTCCAGCTGGGGACGGTGGGGGCGCTGAGCCTCTCCGTGGTGTCATCCGTCTCCATTGTCATCTGCAACAAGGCGCTCATGAGCTCCCTCGGCTTCAACTTTGCCACTACCTTGACGAGTTGGCATCTTCTTGTCACATTTTGCTCCCTCCATGTAGCATTATGGATGAAGTTCTTCGAGCACAAGCCTTTCGACTCGAGAACTGTCATGGGATTTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTTGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGGTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCATTGTATTATCGTGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCTGTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGGTTATGTTTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGGAATGGTCTTATACTCATACTTCTGCACATTGGAGGGCCAGCAAAAAAACGCCGAAGTCTCCCCACAACAGGCGAAAGAAGGCGATTCGGCTCCTTTGATCTCAGACTCTCTGAGCAAAGTTGAGAATGGAGGTGGAGTGGTTGATGATGAGCCTCTCAAGGTACCGATGTGGAGCTCAAAGTACTCAAGGGCGTGAAAATACCTTCCTTTTAGAAGGCGGCATTATACAGGATTCAATTTGGTAGGCGGATAGTAGGGTTGGAAGCCAACCCAGATTGTAATGAACATTCCAGTTACATTTTTGGGTTTATTTAACATTACTATCTAGTATCTACTAGCAGTAAAAGGGTTCTTGGGAGGATTTTACCTTCAAGATAGCAGATCTGCCTTGAAACTTAGACAACAGATATTGTATGATTGTATCTGGATATGCTCCACATCTTTCTCACTGTAACTTCCTATGGGAACATAGATCCACAGATAGACTTCATTCTTTTGTACCAAAGATCCAGAGAACTAGAGATCTGCAAGGTTCAAGTTTGTGACTGTAAGTTTATGTTTACTTTGGACCCAGTGATGGAGCTTTTGTATATTTAGGACCAAGTGCAAAGAGGG]
[+] EMBL CB653286 [ ATCTTCTTACCCTTTTTGCGGTGGGCGGGCGGCGGGCGGCGGAGGAGGAGGAGATGGGTGTCGGCGGGGAGAAGTTCCAGCTGGGGACGGTGGGGGCGCTGAGCCTCTCCGTGGTGTCATCCGTCTCCATTGTCATCTGCAACAAGGCGCTCATGAGCTCCCTCGGCTTCAACTTTGCCACTACCTTGACGAGTTGGCATCTTCTTGTCACATTTTGCTCCCTCCATGTAGCATTATGGATGAAGTTCTTCGAGCACAAGCCTTTCGACTCGAGAACTGTCATGGGATTTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTTGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGGTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCCAGTTGTGTTTTTCATTGTATTATCGTGCTTG ]
[+] EMBL AB060277 [ GGCGGGGAGAAGTTCCAGCTGGGGACGGTGGGGGCGCTGAGCCTCTCCGTGGTGTCATCCGTCTCCATTGTCATCTGCAACAAGGCGCTCATGAGCTCCCTCGGCTTCAACTTTGCCACTACCTTGACGAGTTGGCATCTTCTTGTCACATTTTGCTCCCTCCATGTAGCATTATGGATGAAGTTCTTCGAGCACAAGCCTTTCGACTCGAGAACTGTCATGGGATTTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTTGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTCGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGGTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCATTGTATTATCGTGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCTGTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGATTTTTGGTTATGTTTTGCTTCATGACCCACTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGGAATGGTCTTATACTCATACTTCTGCACATTGGAGGGCCAGCAAAAAAACGCCGAAGTCTCCCCACAACAGGCGAAAGAAGGCGATTCGGCTCCTTTGATCTCAGACTCTCTGAGCAAAGTTGAGAATGGAGGTGGAGTGGTTGATGATGAGCCTCTCAAGGTACCGATGTGGAGCTCAAAGTACTC ]
consensusID : consensus_7213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[TGACTGGACTGAAGGAGTAGAAATTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTCGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGTTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCGTTGTATTATCGTGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCTGTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGGGTTATGTTTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGGGAATGGTCTTATAC]
[+] EMBL CF328775 [TGACTGGACTGAAGGAGTAGAAATTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTCGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGTTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCGTTGTATTATCGTGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCTGTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGGGTTATGTTTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGGGAATGGTCTTATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7213#0 TCCCATCCCCCGATTCGCCACCGCGAATCCCACCACCACCCGCAGATCTCCGCCTCGGCG 60
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 CCATTGCCCACCCTCCACGCCCCCGCCAGATTCGCCCAGATCCACAGCCGGGTGCATCCG 120
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 GCGGCGTGGCTGGGGCGCCCTCGATCGGGAAGCTTTGATCTTCGTACCCTTTTTGCGGTG 180
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 GGCGGGCGGCGGGCGGCGGAGGAGGAGGAGATGGGTGTCGGCGGGGAGAAGTTCCAGCTG 240
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 GGGACGGTGGGGGCGCTGAGCCTCTCCGTGGTGTCATCCGTCTCCATTGTCATCTGCAAC 300
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 AAGGCGCTCATGAGCTCCCTCGGCTTCAACTTTGCCACTACCTTGACGAGTTGGCATCTT 360
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 CTTGTCACATTTTGCTCCCTCCATGTAGCATTATGGATGAAGTTCTTCGAGCACAAGCCT 420
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 TTCGACTCGAGAACTGTCATGGGATTTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTC 480
consensus_7213#1 --TGACTGGACTGAAGGAGTAGAAATTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTC 58
**** ** * * * * ***********************************
consensus_7213#0 AACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATC 540
consensus_7213#1 AACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATC 118
************************************************************
consensus_7213#0 CCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAA 600
consensus_7213#1 CCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAA 178
************************************************************
consensus_7213#0 CTGTCCCTTTCAGTGCTCCTCTTTGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTC 660
consensus_7213#1 CTGTCCCTTTCAGTGCTCCTCTTCGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTC 238
*********************** ************************************
consensus_7213#0 AATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATT 720
consensus_7213#1 AATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATT 298
************************************************************
consensus_7213#0 ATGACAAACACTATCCAGAAGAAGTTCAAGGTTTCTTCAACCCAATTATTATACCAATCT 780
consensus_7213#1 ATGACAAACACTATCCAGAAGAAGTTCAAGTTTTCTTCAACCCAATTATTATACCAATCT 358
****************************** *****************************
consensus_7213#0 TGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACT 840
consensus_7213#1 TGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACT 418
************************************************************
consensus_7213#0 AACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCATTGTATTATCG 900
consensus_7213#1 AACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCGTTGTATTATCG 478
************************************************ ***********
consensus_7213#0 TGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCT 960
consensus_7213#1 TGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCT 538
************************************************************
consensus_7213#0 GTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGG-TTATGT 1019
consensus_7213#1 GTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGGGTTATGT 598
***************************************************** ******
consensus_7213#0 TTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGG 1079
consensus_7213#1 TTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGG 658
************************************************************
consensus_7213#0 -AATGGTCTTATACTCATACTTCTGCACATTGGAGGGCCAGCAAAAAAACGCCGAAGTCT 1138
consensus_7213#1 GAATGGTCTTATAC---------------------------------------------- 672
*************
consensus_7213#0 CCCCACAACAGGCGAAAGAAGGCGATTCGGCTCCTTTGATCTCAGACTCTCTGAGCAAAG 1198
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 TTGAGAATGGAGGTGGAGTGGTTGATGATGAGCCTCTCAAGGTACCGATGTGGAGCTCAA 1258
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 AGTACTCAAGGGCGTGAAAATACCTTCCTTTTAGAAGGCGGCATTATACAGGATTCAATT 1318
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 TGGTAGGCGGATAGTAGGGTTGGAAGCCAACCCAGATTGTAATGAACATTCCAGTTACAT 1378
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 TTTTGGGTTTATTTAACATTACTATCTAGTATCTACTAGCAGTAAAAGGGTTCTTGGGAG 1438
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 GATTTTACCTTCAAGATAGCAGATCTGCCTTGAAACTTAGACAACAGATATTGTATGATT 1498
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 GTATCTGGATATGCTCCACATCTTTCTCACTGTAACTTCCTATGGGAACATAGATCCACA 1558
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 GATAGACTTCATTCTTTTGTACCAAAGATCCAGAGAACTAGAGATCTGCAAGGTTCAAGT 1618
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 TTGTGACTGTAAGTTTATGTTTACTTTGGACCCAGTGATGGAGCTTTTGTATATTTAGGA 1678
consensus_7213#1 ------------------------------------------------------------
consensus_7213#0 CCAAGTGCAAAGAGGG 1694
consensus_7213#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||