These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1694 fasta sequence [TCCCATCCCCCGATTCGCCACCGCGAATCCCACCACCACCCGCAGATCTCCGCCTCGGCGCCATTGCCCACCCTCCACGCCCCCGCCAGATTCGCCCAGATCCACAGCCGGGTGCATCCGGCGGCGTGGCTGGGGCGCCCTCGATCGGGAAGCTTTGATCTTCGTACCCTTTTTGCGGTGGGCGGGCGGCGGGCGGCGGAGGAGGAGGAGATGGGTGTCGGCGGGGAGAAGTTCCAGCTGGGGACGGTGGGGGCGCTGAGCCTCTCCGTGGTGTCATCCGTCTCCATTGTCATCTGCAACAAGGCGCTCATGAGCTCCCTCGGCTTCAACTTTGCCACTACCTTGACGAGTTGGCATCTTCTTGTCACATTTTGCTCCCTCCATGTAGCATTATGGATGAAGTTCTTCGAGCACAAGCCTTTCGACTCGAGAACTGTCATGGGATTTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTTGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGGTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCATTGTATTATCGTGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCTGTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGGTTATGTTTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGGAATGGTCTTATACTCATACTTCTGCACATTGGAGGGCCAGCAAAAAAACGCCGAAGTCTCCCCACAACAGGCGAAAGAAGGCGATTCGGCTCCTTTGATCTCAGACTCTCTGAGCAAAGTTGAGAATGGAGGTGGAGTGGTTGATGATGAGCCTCTCAAGGTACCGATGTGGAGCTCAAAGTACTCAAGGGCGTGAAAATACCTTCCTTTTAGAAGGCGGCATTATACAGGATTCAATTTGGTAGGCGGATAGTAGGGTTGGAAGCCAACCCAGATTGTAATGAACATTCCAGTTACATTTTTGGGTTTATTTAACATTACTATCTAGTATCTACTAGCAGTAAAAGGGTTCTTGGGAGGATTTTACCTTCAAGATAGCAGATCTGCCTTGAAACTTAGACAACAGATATTGTATGATTGTATCTGGATATGCTCCACATCTTTCTCACTGTAACTTCCTATGGGAACATAGATCCACAGATAGACTTCATTCTTTTGTACCAAAGATCCAGAGAACTAGAGATCTGCAAGGTTCAAGTTTGTGACTGTAAGTTTATGTTTACTTTGGACCCAGTGATGGAGCTTTTGTATATTTAGGACCAAGTGCAAAGAGGG] [+] EMBL AK065618 [TCCCATCCCCCGATTCGCCACCGCGAATCCCACCACCACCCGCAGATCTCCGCCTCGGCGCCATTGCCCACCCTCCACGCCCCCGCCAGATTCGCCCAGATCCACAGCCGGGTGCATCCGGCGGCGTGGCTGGGGCGCCCTCGATCGGGAAGCTTTGATCTTCGTACCCTTTTTGCGGTGGGCGGGCGGCGGGCGGCGGAGGAGGAGGAGATGGGTGTCGGCGGGGAGAAGTTCCAGCTGGGGACGGTGGGGGCGCTGAGCCTCTCCGTGGTGTCATCCGTCTCCATTGTCATCTGCAACAAGGCGCTCATGAGCTCCCTCGGCTTCAACTTTGCCACTACCTTGACGAGTTGGCATCTTCTTGTCACATTTTGCTCCCTCCATGTAGCATTATGGATGAAGTTCTTCGAGCACAAGCCTTTCGACTCGAGAACTGTCATGGGATTTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTTGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGGTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCATTGTATTATCGTGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCTGTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGGTTATGTTTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGGAATGGTCTTATACTCATACTTCTGCACATTGGAGGGCCAGCAAAAAAACGCCGAAGTCTCCCCACAACAGGCGAAAGAAGGCGATTCGGCTCCTTTGATCTCAGACTCTCTGAGCAAAGTTGAGAATGGAGGTGGAGTGGTTGATGATGAGCCTCTCAAGGTACCGATGTGGAGCTCAAAGTACTCAAGGGCGTGAAAATACCTTCCTTTTAGAAGGCGGCATTATACAGGATTCAATTTGGTAGGCGGATAGTAGGGTTGGAAGCCAACCCAGATTGTAATGAACATTCCAGTTACATTTTTGGGTTTATTTAACATTACTATCTAGTATCTACTAGCAGTAAAAGGGTTCTTGGGAGGATTTTACCTTCAAGATAGCAGATCTGCCTTGAAACTTAGACAACAGATATTGTATGATTGTATCTGGATATGCTCCACATCTTTCTCACTGTAACTTCCTATGGGAACATAGATCCACAGATAGACTTCATTCTTTTGTACCAAAGATCCAGAGAACTAGAGATCTGCAAGGTTCAAGTTTGTGACTGTAAGTTTATGTTTACTTTGGACCCAGTGATGGAGCTTTTGTATATTTAGGACCAAGTGCAAAGAGGG] [+] EMBL CB653286 [ ATCTTCTTACCCTTTTTGCGGTGGGCGGGCGGCGGGCGGCGGAGGAGGAGGAGATGGGTGTCGGCGGGGAGAAGTTCCAGCTGGGGACGGTGGGGGCGCTGAGCCTCTCCGTGGTGTCATCCGTCTCCATTGTCATCTGCAACAAGGCGCTCATGAGCTCCCTCGGCTTCAACTTTGCCACTACCTTGACGAGTTGGCATCTTCTTGTCACATTTTGCTCCCTCCATGTAGCATTATGGATGAAGTTCTTCGAGCACAAGCCTTTCGACTCGAGAACTGTCATGGGATTTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTTGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGGTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCCAGTTGTGTTTTTCATTGTATTATCGTGCTTG ] [+] EMBL AB060277 [ GGCGGGGAGAAGTTCCAGCTGGGGACGGTGGGGGCGCTGAGCCTCTCCGTGGTGTCATCCGTCTCCATTGTCATCTGCAACAAGGCGCTCATGAGCTCCCTCGGCTTCAACTTTGCCACTACCTTGACGAGTTGGCATCTTCTTGTCACATTTTGCTCCCTCCATGTAGCATTATGGATGAAGTTCTTCGAGCACAAGCCTTTCGACTCGAGAACTGTCATGGGATTTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTTGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTCGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGGTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCATTGTATTATCGTGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCTGTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGATTTTTGGTTATGTTTTGCTTCATGACCCACTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGGAATGGTCTTATACTCATACTTCTGCACATTGGAGGGCCAGCAAAAAAACGCCGAAGTCTCCCCACAACAGGCGAAAGAAGGCGATTCGGCTCCTTTGATCTCAGACTCTCTGAGCAAAGTTGAGAATGGAGGTGGAGTGGTTGATGATGAGCCTCTCAAGGTACCGATGTGGAGCTCAAAGTACTC ] consensusID : consensus_7213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [TGACTGGACTGAAGGAGTAGAAATTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTCGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGTTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCGTTGTATTATCGTGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCTGTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGGGTTATGTTTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGGGAATGGTCTTATAC] [+] EMBL CF328775 [TGACTGGACTGAAGGAGTAGAAATTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTCAACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATCCCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAACTGTCCCTTTCAGTGCTCCTCTTCGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTCAATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATTATGACAAACACTATCCAGAAGAAGTTCAAGTTTTCTTCAACCCAATTATTATACCAATCTTGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACTAACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCGTTGTATTATCGTGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCTGTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGGGTTATGTTTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGGGAATGGTCTTATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7213#0 TCCCATCCCCCGATTCGCCACCGCGAATCCCACCACCACCCGCAGATCTCCGCCTCGGCG 60 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 CCATTGCCCACCCTCCACGCCCCCGCCAGATTCGCCCAGATCCACAGCCGGGTGCATCCG 120 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 GCGGCGTGGCTGGGGCGCCCTCGATCGGGAAGCTTTGATCTTCGTACCCTTTTTGCGGTG 180 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 GGCGGGCGGCGGGCGGCGGAGGAGGAGGAGATGGGTGTCGGCGGGGAGAAGTTCCAGCTG 240 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 GGGACGGTGGGGGCGCTGAGCCTCTCCGTGGTGTCATCCGTCTCCATTGTCATCTGCAAC 300 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 AAGGCGCTCATGAGCTCCCTCGGCTTCAACTTTGCCACTACCTTGACGAGTTGGCATCTT 360 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 CTTGTCACATTTTGCTCCCTCCATGTAGCATTATGGATGAAGTTCTTCGAGCACAAGCCT 420 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 TTCGACTCGAGAACTGTCATGGGATTTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTC 480 consensus_7213#1 --TGACTGGACTGAAGGAGTAGAAATTGGAGTGCTCAATGGCATCTCCATTGGCCTCCTC 58 **** ** * * * * *********************************** consensus_7213#0 AACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATC 540 consensus_7213#1 AACTTGAGTCTTGGTTTTAATTCTGTTGGATTTTACCAGATGACAAAGCTGGCTATCATC 118 ************************************************************ consensus_7213#0 CCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAA 600 consensus_7213#1 CCATGCACTGTTATTTTGGAGACTCTTTTCTTCAGGAAGAAGTTCAGCCGGAGTATCCAA 178 ************************************************************ consensus_7213#0 CTGTCCCTTTCAGTGCTCCTCTTTGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTC 660 consensus_7213#1 CTGTCCCTTTCAGTGCTCCTCTTCGGTGTCGGTGTTGCAACAGTGACTGATCTGCAACTC 238 *********************** ************************************ consensus_7213#0 AATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATT 720 consensus_7213#1 AATGCTGTGGGATCCGTATTGTCCTTGCTGGCAATTATTACAACCTGCATCGCGCAAATT 298 ************************************************************ consensus_7213#0 ATGACAAACACTATCCAGAAGAAGTTCAAGGTTTCTTCAACCCAATTATTATACCAATCT 780 consensus_7213#1 ATGACAAACACTATCCAGAAGAAGTTCAAGTTTTCTTCAACCCAATTATTATACCAATCT 358 ****************************** ***************************** consensus_7213#0 TGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACT 840 consensus_7213#1 TGCCCCTATCAATCACTGACCCTCTTCCTTATTGGTCCATTCCTTGATGGATTTTTGACT 418 ************************************************************ consensus_7213#0 AACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCATTGTATTATCG 900 consensus_7213#1 AACCAAAATGTATTTGCATTCGACTACACATCCCAAGTTGTGTTTTTCGTTGTATTATCG 478 ************************************************ *********** consensus_7213#0 TGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCT 960 consensus_7213#1 TGCTTGATATCTGTCTCAGTGAACTTCAGCACTTTCCTTGTGATCGGAAAGACTTCTCCT 538 ************************************************************ consensus_7213#0 GTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGG-TTATGT 1019 consensus_7213#1 GTCACTTACCAAGTCCTGGGCCATCTTAAAACATGCCTAGTACTGACCTTTGGGTTATGT 598 ***************************************************** ****** consensus_7213#0 TTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGG 1079 consensus_7213#1 TTTGCTTCATGACCCATTTAGCTGGAGAAACATACTCGGCATCCTAATTGCAGTAGTTGG 658 ************************************************************ consensus_7213#0 -AATGGTCTTATACTCATACTTCTGCACATTGGAGGGCCAGCAAAAAAACGCCGAAGTCT 1138 consensus_7213#1 GAATGGTCTTATAC---------------------------------------------- 672 ************* consensus_7213#0 CCCCACAACAGGCGAAAGAAGGCGATTCGGCTCCTTTGATCTCAGACTCTCTGAGCAAAG 1198 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 TTGAGAATGGAGGTGGAGTGGTTGATGATGAGCCTCTCAAGGTACCGATGTGGAGCTCAA 1258 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 AGTACTCAAGGGCGTGAAAATACCTTCCTTTTAGAAGGCGGCATTATACAGGATTCAATT 1318 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 TGGTAGGCGGATAGTAGGGTTGGAAGCCAACCCAGATTGTAATGAACATTCCAGTTACAT 1378 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 TTTTGGGTTTATTTAACATTACTATCTAGTATCTACTAGCAGTAAAAGGGTTCTTGGGAG 1438 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 GATTTTACCTTCAAGATAGCAGATCTGCCTTGAAACTTAGACAACAGATATTGTATGATT 1498 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 GTATCTGGATATGCTCCACATCTTTCTCACTGTAACTTCCTATGGGAACATAGATCCACA 1558 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 GATAGACTTCATTCTTTTGTACCAAAGATCCAGAGAACTAGAGATCTGCAAGGTTCAAGT 1618 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 TTGTGACTGTAAGTTTATGTTTACTTTGGACCCAGTGATGGAGCTTTTGTATATTTAGGA 1678 consensus_7213#1 ------------------------------------------------------------ consensus_7213#0 CCAAGTGCAAAGAGGG 1694 consensus_7213#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||