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Oryza sativa
cluster # 7216 cluster # 7216       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7216#0 length = 1694 sequences # 4  

consensusID : consensus_7216#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1694
fasta sequence
                              [GGAGCTCGTCACTGTCAATTGACAAAATTCAGTAGCAAATCCTACTCTGTCTGCATCAATGGCTGGCCCAACCATCGTCCTCCTCCCGGCCTGGGGATCCGGCCACTTCATGTCCGCGCTGGAAGCCGGCAAGCGGCTGCTCGTCGCCGGCGGGGGCGCCGTCTCCCTCACCGTGCTCGTCATGCAGGCGCCGACGGAGATAGAGGCGTCGGTGGTCGAGGCCCACGTGCGCCGGGAGG-GGC-TTCCGGGCTCGACGTCACCTTCCGGCGGCTCCCCG-CGTCGAGCACCCCACCGGCTGCGAGGCGACCGAGGAGTTCATGTCCCGGTACGTCGAGCGCCACGCGCACCACGTCAAGGCGGCCATCGCCGGCTTGGCGTCCCCCGTGGCCGCGGTCGTCGTGGACCTCTTCTTCACGCCCCTGCTCGACGCGGCGCACGAGCTCTCGCTCCCGGCGTACGTGTACTTCGCCTCCACCGCCGCGTTCCTCGCGCTCATGCTGCGGCTGCCGGAGCTCCGGGACGACCTGACCGTCGGGTTCGACGGCATGGAGGGAACCGTGGACGTGCCCGGGCTGCCGCCGGTGCCGCCGTCGTACATGCCGGTGTGCCTCGTGAGCAAGACGGTGAAGAACTACGACTGGTTCGAGTACCACGGCCGCCGCTTCACGGAGGCGAAGGGCATCATCGTGAACTCCTCCGTTGAGCTCGAGGGCGCGGTCCTCGCCGCGATCGCGGACGGCCGCCGCCCCGCTCCGGCGATCCACGCGATCGGGCCGGTGATCTGGTTCGACGCCACGCTGCCGCCCGAGCAGCCGCACGAGTGCGTGCGGTGGCTCGACGCGCAGCCGGCGGCGTCGGTGGTGTTCCTCTGCTTCGGGAGCATCGGCTTCCTCGACGCGGCGCAGGTGAGGGAGCTCGCCGCGGGCCTGGAGCGCAGCGGCCACCGCTTCCTGTGGGTCCTGCGCGGCGCGCCCGCCGGCGGCGTGCGGTACCCGACGGACGCGGACCCGGGCGAGCTGCTCCCGGAGGGGTTCCTGGAGGCGACCGCCGGGAGAGGGATGGTGTGGCCGAGGTGGGCGCCGCAGAAGGACATCCTGGGACACGCCGCCGTGGGCGGGTTCGTGACGCACTGCGGCTGGAACTCGGTGCTGGAGAGCCTGTGGTTCGGCGTGCCGATGGCGACATGGCCGCTCTACGGCGAGCAGCACCTCAACGCGTTCGAGGCCGTGGCCTCCATGGGCGTCGCGGTCGAGCTGAGGAGGACGACGGCGAAGGACGGCGACGCGGCGAGATCGCTCGTGGAGGCGGCGGAGGTGGAGCGCGCGGTGAGGAGGCTGATGGCGCCGCAGGGCGGCGGGTCGTCGGAGGCGAGGGAGAAGGCCGCGGAGGTGAGCGCGGCGTGCAGGAAGGCCGTGGAGGAGGGCGGGTCGTCGCACGCGGCGCTGCAACGGCTCGTGCGTGAGATCGTTCGTGTCGTGGCAGGCCTCACTAGGCCGGAATAGCTGGCTGGTTGCGGTTGGTTGGCCCATCTCACACGGTACTCGGCCCAGTCTAGACGAGAAAATTATACTAGAAACCAAGACGTCAACCACGTGATGCGGCTTAAGGGTGTGTTTGATTCGTGGTAGGGTATAGCCATCCCTACCCCTATGAGCAAATCCTGGAGAGATTGAAGTCAAAAAAAAAAAAAAAAA]

[+] EMBL AK107291             [GGAGCTCGTCACTGTCAATTGACAAAATTCAGTAGCAAATCCTACTCTGTCTGCATCAATGGCTGGCCCAACCATCGTCCTCCTCCCGGCCTGGGGATCCGGCCACTTCATGTCCGCGCTGGAAGCCGGCAAGCGGCTGCTCGTCGCCGGCGGGGGCGCCGTCTCCCTCACCGTGCTCGTCATGCAGGCGCCGACGGAGATAGAGGCGTCGGTGGTCGAGGCCCACGTGCGCCGGGAGGCGGC TTCCGGGCTCGACGTCACCTTCCGGCGGCTCCCCGCCGTCGAGCACCCCACCGGCTGCGAGGCGACCGAGGAGTTCATGTCCCGGTACGTCGAGCGCCACGCGCACCACGTCAAGGCGGCCATCGCCGGCTTGGCGTCCCCCGTGGCCGCGGTCGTCGTGGACCTCTTCTTCACGCCCCTGCTCGACGCGGCGCACGAGCTCTCGCTCCCGGCGTACGTGTACTTCGCCTCCACCGCCGCGTTCCTCGCGCTCATGCTGCGGCTGCCGGAGCTCCGGGACGACCTGACCGTCGGGTTCGACGGCATGGAGGGAACCGTGGACGTGCCCGGGCTGCCGCCGGTGCCGCCGTCGTACATGCCGGTGTGCCTCGTGAGCAAGACGGTGAAGAACTACGACTGGTTCGAGTACCACGGCCGCCGCTTCACGGAGGCGAAGGGCATCATCGTGAACTCCTCCGTTGAGCTCGAGGGCGCGGTCCTCGCCGCGATCGCGGACGGCCGCCGCCCCGCTCCGGCGATCCACGCGATCGGGCCGGTGATCTGGTTCGACGCCACGCTGCCGCCCGAGCAGCCGCACGAGTGCGTGCGGTGGCTCGACGCGCAGCCGGCGGCGTCGGTGGTGTTCCTCTGCTTCGGGAGCATCGGCTTCCTCGACGCGGCGCAGGTGAGGGAGCTCGCCGCGGGCCTGGAGCGCAGCGGCCACCGCTTCCTGTGGGTCCTGCGCGGCGCGCCCGCCGGCGGCGTGCGGTACCCGACGGACGCGGACCCGGGCGAGCTGCTCCCGGAGGGGTTCCTGGAGGCGACCGCCGGGAGAGGGATGGTGTGGCCGAGGTGGGCGCCGCAGAAGGACATCCTGGGACACGCCGCCGTGGGCGGGTTCGTGACGCACTGCGGCTGGAACTCGGTGCTGGAGAGCCTGTGGTTCGGCGTGCCGATGGCGACATGGCCGCTCTACGGCGAGCAGCACCTCAACGCGTTCGAGGCCGTGGCCTCCATGGGCGTCGCGGTCGAGCTGAGGAGGACGACGGCGAAGGACGGCGACGCGGCGAGATCGCTCGTGGAGGCGGCGGAGGTGGAGCGCGCGGTGAGGAGGCTGATGGCGCCGCAGGGCGGCGGGTCGTCGGAGGCGAGGGAGAAGGCCGCGGAGGTGAGCGCGGCGTGCAGGAAGGCCGTGGAGGAGGGCGGGTCGTCGCACGCGGCGCTGCAACGGCTCGTGCGTGAGATCGTTCGTGTCGTGGCAGGCCTCACTAGGCCGGAATAGCTGGCTGGTTGCGGTTGGTTGGCCCATCTCACACGGTACTCGGCCCAGTCTAGACGAGAAAATTATACTAGAAACCAAGACGTCAACCACGTGATGCGGCTTAAGGGTGTGTTTGATTCGTGGTAGGGTATAGCCATCCCTACCCCTATGAGCAAATCCTGGAGA                           ]
[+] EMBL C72161               [                AATTGACAAAATTCAGTAGCAAATCCTACTCTGTCTGCATCAATGGCTGGCCCAACCATCGTCCTCCTCCCGGCCTGGGGATCCGGCCACTTCATGTCCGCGCTGGAAGCCGGCAAGCGGCTGCTCGTCGCCGGCGGGGGCGCCGTCTCCCTCACCGTGCTCGTCATGCAGGCGCCGACGGAGATAGAGGCGTCGGTGGTCGAGGCCCACGTGCGCCGGGAGG GGCTTTCCGGGCTCGACGTCACCTTCCGGCGGCTCCCCG CGTCGAGCACCCCACCGGCTGCGAGGCGACCGAGGAGTTCATGTCCCGGTACGTCGAGCGCCACG GAACCACGTCAAGGCGGCCATTG CGGCTTTGNGTCCCCCGTGGCCGCGGTCGTCGTTGACCTCTTTTTtaaag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL C72035               [                 ATTGACAAAATTNAGTAGCAAATCCTACTCTGTCTGCATCAATGGCTGGCCCAACCATCGTCCTCCTCCCGGCCTGGGGATCCGGCCACTTNATGTCCGNGCTGGAAGCCGGCAAGCGGCTGCTCGTNGCCGGCGGGGGCGCCGTCTCCNTNACCGTGCTCGTAATGCAGGGGCCGACGGAGATAGAGGCGTCGGTGGTCGAGGCCCACGTNCGCCGGGAGG GCN TTCCGGNCTCGACGTCACCTTCCGGCGGCTCCCCG CGTCNAGCACCCCACCGGCTGCAAGGCGACCNAGGAGTTCATGTNCCGGTACGTCGAGCGCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU172441             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATGGCNCCGCAGGGCGGCGGGTCGTCGGAGGCGAGGGANAAGGCCCCGGAGGTGAGCNCGGCGTGCAGGAAGGCCGTGGAGGAGGGCGGGTNGTCGCACGCGGCGCTGCAACGGCTCGTGCGTGAGATCGTTCGTGTCGTGGCAGGCCNCACTAGGCCGGAATAGCTGGCTGGTTGCGGTTGGTTGGCCCATNTCACACGGTACTCGGCCCAGTNTAGACGAGAAAATTATACTAGAAACCAAGACGTCAACCACGTGATGCGGCTTAAGGGTGTGTTTGATTCGTGGTAGGGTATAGCCATCCCTACCCCTATGAGCAAATCCTGGAGAGATTGAAGTCAAAAAAAAAAAAAAAAA]


>consensus_7216#0 GGAGCTCGTCACTGTCAATTGACAAAATTCAGTAGCAAATCCTACTCTGTCTGCATCAAT GGCTGGCCCAACCATCGTCCTCCTCCCGGCCTGGGGATCCGGCCACTTCATGTCCGCGCT GGAAGCCGGCAAGCGGCTGCTCGTCGCCGGCGGGGGCGCCGTCTCCCTCACCGTGCTCGT CATGCAGGCGCCGACGGAGATAGAGGCGTCGGTGGTCGAGGCCCACGTGCGCCGGGAGGG GCTTCCGGGCTCGACGTCACCTTCCGGCGGCTCCCCGCGTCGAGCACCCCACCGGCTGCG AGGCGACCGAGGAGTTCATGTCCCGGTACGTCGAGCGCCACGCGCACCACGTCAAGGCGG CCATCGCCGGCTTGGCGTCCCCCGTGGCCGCGGTCGTCGTGGACCTCTTCTTCACGCCCC TGCTCGACGCGGCGCACGAGCTCTCGCTCCCGGCGTACGTGTACTTCGCCTCCACCGCCG CGTTCCTCGCGCTCATGCTGCGGCTGCCGGAGCTCCGGGACGACCTGACCGTCGGGTTCG ACGGCATGGAGGGAACCGTGGACGTGCCCGGGCTGCCGCCGGTGCCGCCGTCGTACATGC CGGTGTGCCTCGTGAGCAAGACGGTGAAGAACTACGACTGGTTCGAGTACCACGGCCGCC GCTTCACGGAGGCGAAGGGCATCATCGTGAACTCCTCCGTTGAGCTCGAGGGCGCGGTCC TCGCCGCGATCGCGGACGGCCGCCGCCCCGCTCCGGCGATCCACGCGATCGGGCCGGTGA TCTGGTTCGACGCCACGCTGCCGCCCGAGCAGCCGCACGAGTGCGTGCGGTGGCTCGACG CGCAGCCGGCGGCGTCGGTGGTGTTCCTCTGCTTCGGGAGCATCGGCTTCCTCGACGCGG CGCAGGTGAGGGAGCTCGCCGCGGGCCTGGAGCGCAGCGGCCACCGCTTCCTGTGGGTCC TGCGCGGCGCGCCCGCCGGCGGCGTGCGGTACCCGACGGACGCGGACCCGGGCGAGCTGC TCCCGGAGGGGTTCCTGGAGGCGACCGCCGGGAGAGGGATGGTGTGGCCGAGGTGGGCGC CGCAGAAGGACATCCTGGGACACGCCGCCGTGGGCGGGTTCGTGACGCACTGCGGCTGGA ACTCGGTGCTGGAGAGCCTGTGGTTCGGCGTGCCGATGGCGACATGGCCGCTCTACGGCG AGCAGCACCTCAACGCGTTCGAGGCCGTGGCCTCCATGGGCGTCGCGGTCGAGCTGAGGA GGACGACGGCGAAGGACGGCGACGCGGCGAGATCGCTCGTGGAGGCGGCGGAGGTGGAGC GCGCGGTGAGGAGGCTGATGGCGCCGCAGGGCGGCGGGTCGTCGGAGGCGAGGGAGAAGG CCGCGGAGGTGAGCGCGGCGTGCAGGAAGGCCGTGGAGGAGGGCGGGTCGTCGCACGCGG CGCTGCAACGGCTCGTGCGTGAGATCGTTCGTGTCGTGGCAGGCCTCACTAGGCCGGAAT AGCTGGCTGGTTGCGGTTGGTTGGCCCATCTCACACGGTACTCGGCCCAGTCTAGACGAG AAAATTATACTAGAAACCAAGACGTCAACCACGTGATGCGGCTTAAGGGTGTGTTTGATT CGTGGTAGGGTATAGCCATCCCTACCCCTATGAGCAAATCCTGGAGAGATTGAAGTCAAA AAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)