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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1607 fasta sequence
[CTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCTGCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGCCCGCTTTTGATTCACTTATCCTATTTTCTTATCATTGATATACTTGGTTTTGTTTCCTTGGTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTATCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGCTCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGACAGTAAGATGTTCCTTTCCTTTCTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTCAGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGACTCCCCAAACTCCATCCATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGTGTTTGTGGTGCTGGCATACATGATCATTATTCTTGTCACTGGTTCTCTATTGGTGTTCATGTACATAGCTCATGTTTCAAGTGCTAGAGATGTGCTAACAAGGAAAAGCATCAACAAAGCTCTCTTCTCGATATCGGTCACAGTCTCCTCATTCACAAATGGAGGGTTATTGCCGACAAATGAGAGTATGGTTGTATTCTCCTCAAACAATGGCCTCCTGTTGCTACTCATTGGCCAGATTCTTGCAGGCAGCACACTGTTCCCTGTGTTTCTGAGGTTGGTGATATGGGCATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAGCCTGACTTCATGATGAACAACAGCAGCGCAGTAGGTTTCAGTCACCTGCTGCCTAACTTGCAGACAATATTTCTTGCAGCTGTGGAGGTTGCTTTTGTAGCCATGACAGTCATCCTCTTCTGCTGCTTGAACTGGGATTCTGTAGTGTTTGCAGGGCTCAGCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCAGTGAATGCAAGGCAGGCAGGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACTATTCATGGTCATGATGTACACTCCATCCTTGACAAAGTTGTTCTCAGCATGTCAAGATCACAAACGAATCGGCCCAGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTCCTGAAGATGATGGCATTTTCACCACTCGGCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGAAAGGAGATCACTCTCCACTGACCCTCTCAATTTCTCCACATTTAACATCATCTTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCTGCAGCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCGGGGTGGTGGAGTGAACCAGGGAAACTGATTCTTGTTCTTGCGATGCTCTGCGGGAGGCTCAACTCAAAGGATTCCACAAGCGCACGAACTAGGTGATGATGATCAGAAGCGATCAGTATGCGATCGATGTTCTGCAAGAATCAAGAATGCAGTTAACGCCCATC]
[+] EMBL OSA491820 [CTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCTGCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGCCCGCTTTTGATTCACTTATCCTATTTTCTTATCATTGATATACTTGGTTTTGTTTCCTTGGTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTATCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGCTCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGACAGTAAGATGTTCCTTTCCTTTCTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTCAGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGACTCCCCAAACTCCATCCATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGTGTTTGTGGTGCTGGCATACATGATCATTATTCTTGTCACTGGTTCTCTATTGGTGTTCATGTACATAGCTCATGTTTCAAGTGCTAGAGATGTGCTAACAAGGAAAAGCATCAACAAAGCTCTCTTCTCGATATCGGTCACAGTCTCCTCATTCACAAATGGAGGGTTATTGCCGACAAATGAGAGTATGGTTGTATTCTCCTCAAACAATGGCCTCCTGTTGCTACTCATTGGCCAGATTCTTGCAGGCAGCACACTGTTCCCTGTGTTTCTGAGGTTGGTGATATGGGCATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAGCCTGACTTCATGATGAACAACAGCAGCGCAGTAGGTTTCAGTCACCTGCTGCCTAACTTGCAGACAATATTTCTTGCAGTTGTGGAGGTTGCTTTTGTAGCCATGACAGTCATCCTCTTCTGCTGCTTGAACTGGGATTCTGTAGTGTTTGCAGGGCTCAGCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCAGTGAATGCAAGGCAGGCAGGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACTATTCATGGTCATGATGTACACTCCATCCTTGACAAAGTTGTTCTCAGCATGTCAAGATCACAAACGAATCGGCCCAGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTCCTGAAGATGATGGCATTTTCACCACTCGGCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGAAAGGAGATCACTCTCCACTGACCCTCTCAATTTATCCACATTTAACATCATCTTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCTGCAGCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCGGGGTGGTGGAGTGAACCAGGGAAACTGATTCTTGTTCTTGCAATGCTCTGCGGGAGGCTCAACTCAAAGGATTCCACAAGCGCACGAACTAGGTGATGATGATCAGAAGCGATCAGTATGCGATC ]
[+] EMBL OSA491855 [ GCATACATGATTATTATTCTTGTCACTGGTTCTCTATTGGTGTTCATGTACATAGCTCATGTTTCAAGTGCTAGAGATGTGCTAACAAGGAAAAGCATCAACAAAGCTCTCTTCTCGATATCGGTCACAGTCTCCTCATTTACAAATGGAGGGTTATTGCCGACAAATGAGAGTATGGCTGTATTCTCCTCAAACAATGGCCTCCTGTTGCTACTCATCGGCCAGATTCTTGCAGGCAGCACACTGCTCCCTATGTTTCTGAGGTTGGTGATATGGGCATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAGCCAGACTTCATGATGAACAACAGCAGCTCAGTAGGTTTCAGTCACCTGCTACCTAACTTGCAGACAATATTTCTTGCAGCTGTGGAGGTTGCTTTTGTAGGCATGACAGTCATCCTCTTCTGCTGCTTGAACTGGGATTCTGCAGTGTTTGCAGGGCTAACCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCAGTGAGTGCAAGGCAGGCAGGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACTATTCATGGTCATGATGTACACTCCATCCTTGACAAAGTTGTTCTCAGCATGTCAAGATCACAAACAAATCGGCCCGGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTCCTGAAGACGATGGCATTTTCACCACTAGCCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGAAAGGAGATCGATCTCCACTGACCCTCTCAATTTCTCCACATTTAACATCATCTTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGACAGCTACAGCACCAGGATGGGATTGCTTGCCATGAGAAGCCATACAGCTTCTCGGGGTGGTGGAGTGAACCAGGGAAGCTGATTCTTGTTCTTGCGATGCTCTACGGGAGGCTCAACTCAAAGGATTCCACAAGCGCACGAACTAGGTG ]
[-] EMBL CB623166 [ ATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAGCCTGACTTCATGATGAACAACAGCAGCGCAGTAGGTNTCAGTCACCTGCTGCCTAACTTGCAGACAATATTTCTTGCAGCTGTGGAGGTTGCTTTTGTAGCCATGACAGTCATCCTCTTCTGCTGCTTGAACTGGGATTCTGTAGTGTTTGCAGGGCTCAGCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCAGTGAATGCAAGGCAGGCAGGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACTATTCATGGTCATGATGTACACTCCATCCTTGACAAAGTTGTTCTCAGCATGTCAAGATCACAAACGAATCGG CCAGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTCCTGAAGATGATGGCATTTTCACCCCTCGGCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGAAAGGAGATCACTCTCCACTGACCCTCTCAATTTCTCCACATTTAACATCATCTTTGAGGTGATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCTGCAGCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCGGGGTGGTGGAGTGAACCAGGGAAACTGATTCTTGTTCTTGCGATGCTCTGCGGGAGGCTCAACTCAAAGGATTCCACAAGCGCACGAACTAGGTGATGATGATCAGAAGCGATCAATGTGCGATCGATGTTCTGCAAGAATCAAGAATGCAGTTAACGCCCATC]
consensusID : consensus_7220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence
[AGCTAGAGGCTCTGCCCTCTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCTGCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGCCCGCTTTTGATTCACTTATCATATTTTTTTATCATTGATATACTTGGTTTTGTTTCCTTGGTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTATCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGCTCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGGCAGTAAGATGTTCCTTTCCTTTCTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTCAGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGATTCCCCAAACTCCATCCATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGGGTGAGTTTGAGAAGAAGGGGATTGAGAAGATTGGGAAGATACGTAAAACGAGGTGAGCCATTAGCGCATGATTAATTACGTATTAACTATTTAAAATTTTAAAAATGGATTAATATGATTTTTTAAAGCAACTTTCCTATAGAATTTTTTTGCAAAAAACGTATCGTTTAGTAGTTTGGGAAGCGTGCGCGCGGAATACGATGTCCTTTCTCACCCTATGTCACCCGAACGAACGCTCCCTTAGTGTTTGTGGTGCTGGCATACATGATCATTATTCTTGTCACTNGGTCTCTATTGGTGTTCATGTACATAG]
[+] EMBL CB623165 [AGCTAGAGGCTCTGCCCTCTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCTGCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGCCCGCTTTTGATTCACTTATCATATTTTTTTATCATTGATATACTTGGTTTTGTTTCCTTGGTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTATCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGCTCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGGCAGTAAGATGTTCCTTTCCTTTCTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTCAGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGATTCCCCAAACTCCATCCATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGGGTGAGTTTGAGAAGAAGGGGATTGAGAAGATTGGGAAGATACGTAAAACGAGGTGAGCCATTAGCGCATGATTAATTACGTATTAACTATTTAAAATTTTAAAAATGGATTAATATGATTTTTTAAAGCAACTTTCCTATAGAATTTTTTTGCAAAAAACGTATCGTTTAGTAGTTTGGGAAGCGTGCGCGCGGAATACGATGTCCTTTCTCACCCTATGTCACCCGAACGAACGCTCCCTTAGTGTTTGTGGTGCTGGCATACATGATCATTATTCTTGTCACTNGGTCTCTATTGGTGTTCATGTACATAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7220#0 ------------------CTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCT 42
consensus_7220#1 AGCTAGAGGCTCTGCCCTCTATCTCCAATGCCTATTCGGCTGCATATCTTTGTCAATTCT 60
******************************************
consensus_7220#0 GCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGC 102
consensus_7220#1 GCAAGGCATGCCATCAACTCATCGGCATTCATTTGTCGGTTCATCGCATACCATCTTAGC 120
************************************************************
consensus_7220#0 CCGCTTTTGATTCACTTATCCTATTTTCTTATCATTGATATACTTGGTTTTGTTTCCTTG 162
consensus_7220#1 CCGCTTTTGATTCACTTATCATATTTTTTTATCATTGATATACTTGGTTTTGTTTCCTTG 180
******************** ****** ********************************
consensus_7220#0 GTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTA 222
consensus_7220#1 GTGGTGCTCAGGCCAAGCAACCACAAGTACAATCCTCGCTATGTTGATATGTTTTTCCTA 240
************************************************************
consensus_7220#0 TCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGC 282
consensus_7220#1 TCGACATCTGCAGTTACAGTCATAGGATTAGCCACCATACAAATGGAGGATCTTTCCAGC 300
************************************************************
consensus_7220#0 TCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGACAGTAAGATGTTCCTTTCCTTT 342
consensus_7220#1 TCTCAGATAGCTATCCTGACTCTCTTGATGTTCTTAGGCAGTAAGATGTTCCTTTCCTTT 360
************************************* **********************
consensus_7220#0 CTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTC 402
consensus_7220#1 CTTGGCCTTGTCCTTGAGTCAAGCAAGCAAAACAAGCATGATCCTGAAAACCGTAGAGTC 420
************************************************************
consensus_7220#0 AGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGACTCCCCAAACTCCATCC 462
consensus_7220#1 AGTTCAGTTACTGTGTGCAAGCAATCACAGCTAGAAGAGGCGATTCCCCAAACTCCATCC 480
******************************************* ****************
consensus_7220#0 ATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGTGT----TTGTGGTGCT 518
consensus_7220#1 ATGAACTCCATTGATATCAAGAAGAGATGCCTCAAATACTTAGGGTGAGTTTGAGAAGAA 540
******************************************* ** *** * *
consensus_7220#0 GGCATACATGATCATT------ATTCTTGTCACT-GGTTCTCTATTGGTGT----TCATG 567
consensus_7220#1 GGGGATTGAGAAGATTGGGAAGATACGTAAAACGAGGTGAGCCATTAGCGCATGATTAAT 600
** ** *** ** * * ** *** * *** * * * *
consensus_7220#0 TACATAGCTCATGTTTCAAGTGCTAGAGATGTGCTAACAAGGAAAAGCATCAACAAAGCT 627
consensus_7220#1 TACGTATTAACTATTTAAAATTTTAAAAATGGATTAATATG---ATTTTTTAAAGCAACT 657
*** ** * *** ** * ** * *** *** * * * * ** * **
consensus_7220#0 CTCTTCTCGA---TATCGGTCACAGTCTCCTCATTCACAAATGGAGGGTTATTGCCGACA 684
consensus_7220#1 TTCCTATAGAATTTTTTTGCAAAAAACGTATCGTTTAGTAGTTTGGGAAGCGTGCGCGCG 717
** * * ** * * * * * * ** ** * * * ** *** *
consensus_7220#0 AATGAGAGTATGGTTG-------TATTCTCCTCAAACAATGGCCTCCTGTTGCTACTCAT 737
consensus_7220#1 GAATACGATGTCCTTTCTCACCCTATGTCACCCGAACGAACGCTCCCT--TAGTGTTTGT 775
* * * * ** *** * * *** * ** *** * * * *
consensus_7220#0 TGGCCAGATTCTTGCAGGCAGCACACTGTTCCCTGTGTTTCTGAGGTTGGTGATATGGGC 797
consensus_7220#1 GGTGCTGGCATACATGATCATTATTCTTGTCACTNGGTCTCTATTGGTGTTCATGTACAT 835
* * * ** * ** ** ** ** *** * ** * ** *
consensus_7220#0 ATTGAGAGGACTAAGATTAGCAAAAGCTGAAGAGCCTGACTTCATGATGAACAACAGCAG 857
consensus_7220#1 AG---------------------------------------------------------- 837
*
consensus_7220#0 CGCAGTAGGTTTCAGTCACCTGCTGCCTAACTTGCAGACAATATTTCTTGCAGCTGTGGA 917
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 GGTTGCTTTTGTAGCCATGACAGTCATCCTCTTCTGCTGCTTGAACTGGGATTCTGTAGT 977
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 GTTTGCAGGGCTCAGCTCCCTCCAGAAGATAACCAATGCATTGTTCATGGCAGTGAATGC 1037
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 AAGGCAGGCAGGAGAAAATTCCATTGATTGTTCCCTTGTTGCGCCAGCGGCTTTAGTACT 1097
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 ATTCATGGTCATGATGTACACTCCATCCTTGACAAAGTTGTTCTCAGCATGTCAAGATCA 1157
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 CAAACGAATCGGCCCAGAAAGCGACGATAGAACAAGCAAGGGGAAACCATTCCTGAAGAT 1217
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 GATGGCATTTTCACCACTCGGCTTCAACACCACAGTGATAATGCTGGTCTGCATCACTGA 1277
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 AAGGAGATCACTCTCCACTGACCCTCTCAATTTCTCCACATTTAACATCATCTTTGAGGT 1337
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 GATAAGTGCCTACGGGAACATTGGGTTGTCCACTGGCTACAGCTGCTCGAGGCAGCTGCA 1397
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 GCACCAGGAGGGGATTGCCTGCCATGAGAAGGCGTACAACTTCTCGGGGTGGTGGAGTGA 1457
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 ACCAGGGAAACTGATTCTTGTTCTTGCGATGCTCTGCGGGAGGCTCAACTCAAAGGATTC 1517
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 CACAAGCGCACGAACTAGGTGATGATGATCAGAAGCGATCAGTATGCGATCGATGTTCTG 1577
consensus_7220#1 ------------------------------------------------------------
consensus_7220#0 CAAGAATCAAGAATGCAGTTAACGCCCATC 1607
consensus_7220#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||