These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1699 fasta sequence [GTCCGTGTGGCGCCATAGGGGGCGACAGAGGGGATCTCTCTCCCCTCGGCTTTCGCCTCGGCTGCAGTTTCGCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCACGGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTGATCCCTTCCATTTCGTCCTAGTTCGCTCCGTGCTGTATAGCCTTTGCTGTGGGGATAATGGCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCGCCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCAAAGACTTCATGTTCCAGTCATTAACATGATAAGCCAGTTTATTTGGTCAAAAAAAATTCAATCCTTTCTTTTCAGAAAAGAGAGATATTTCAAGATCTGGCCCCACTTCTTTGGCATTCTTTTGGAACAGTTGCTGCACTTCTTCAGGAAATTGTGTCAATCTACTCTGCACTTTCACCCCCAACATTGTCACCAGGTGCATCGAACCGAGTCTGCAATGCACTTGCACTTCTTCAGCTCATATTCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACTTGTTAAGGTTGATGATACTGAAGTTATCAGTTTTCTGCTGCAAACTGAAATAATTCCTCTGTGTTTGCGTACCATGGAAATGGGAAGTGAGCTGTCAAAAACTGTGGCCACCTTCATTGTTCAGAAGATTCTCCTCGATGATGTTGGATTGCGCTACATTTGTGCCACTGCTGAGCGTTTCTTTGCTGTAGGCAGTGTTTTAGCAAACATGGTAGTTTCACTTGCTGAGCAGCCTTCCACAAGGTTGCTGAAGCACATTATCCGATGTTACCTTAGGCTGTCAGACAATTCCAGGGCATGTGCTGCACTACAAACTTGCCTCCCTGACATGCTGAAGGATGGCACGTTCAATAACTGTCTTAGGGATGATCCTACAACAAGGCGCTGGCTCCAGCAATTGCTTCTTAATGTGACAGGCGCAGGCATGGGAGCTGCTCCTCAGCCAGGCCTGGATCACATGATGGGGATATAAATCAGTCTGATTGCTGCAATTCACAACAATAATA-ACCTTATCTACCCGTGAATTGCAAGTAGGGAAGATCTCCTAGGT-ATTTAGGCTAGAAATAGGTAGCATGGTTAGTCCAACCTTCGAAAACAAGAGGAACTGTTTGTGTGTTAGTGTCATTGGCTGTTAAGGGTGCTGTGCTTATTCTTTAATGCTGTGGAAACAAGGACAGCAAGAAAGCTCATTTTTATGTTCTTGCACCAGAACTGCTTTTGCTTTGACAGTTCCAACGTTTAAGAAAAAAAGAGGAAGAGCTTAGGTTTGATAATTTATTCCATGAGGAGCATACCCGAAGGAAGACTATGTTGTATGCTGCCTTTGGGTGATGATGTTTAATTGTGGTGTGATGTGCAACCGTTTACAAGTAATGTTTGTACAGGCCAGCCTTGTCGTAGGCTTTGTCTTTGTAAAAAAAAAAA] [+] EMBL AK106782 [GTCCGTGTGGCGCCATAGGGGGCGACAGAGGGGATCTCTCTCCCCTCGGCTTTCGCCTCGGCTGCAGTTTCGCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCACGGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTGATCCCTTCCATTTCGTCCTAGTTCGCTCCGTGCTGTATAGCCTTTGCTGTGGGGATAATGGCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCGCCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCAAAGACTTCATGTTCCAGTCATTAACATGATAAGCCAGTTTATTTGGTCAAAAAAAATTCAATCCTTTCTTTTCAGAAAAGAGAGATATTTCAAGATCTGGCCCCACTTCTTTGGCATTCTTTTGGAACAGTTGCTGCACTTCTTCAGGAAATTGTGTCAATCTACTCTGCACTTTCACCCCCAACATTGTCACCAGGTGCATCGAACCGAGTCTGCAATGCACTTGCACTTCTTCAGCTCATATTCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACTTGTTAAGGTTGATGATACTGAAGTTATCAGTTTTCTGCTGCAAACTGAAATAATTCCTCTGTGTTTGCGTACCATGGAAATGGGAAGTGAGCTGTCAAAAACTGTGGCCACCTTCATTGTTCAGAAGATTCTCCTCGATGATGTTGGATTGCGCTACATTTGTGCCACTGCTGAGCGTTTCTTTGCTGTAGGCAGTGTTTTAGCAAACATGGTAGTTTCACTTGCTGAGCAGCCTTCCACAAGGTTGCTGAAGCACATTATCCGATGTTACCTTAGGCTGTCAGACAATTCCAGGGCATGTGCTGCACTACAAACTTGCCTCCCTGACATGCTGAAGGATGGCACGTTCAATAACTGTCTTAGGGATGATCCTACAACAAGGCGCTGGCTCCAGCAATTGCTTCTTAATGTGACAGGCGCAGGCATGGGAGCTGCTCCTCAGCCAGGCCTGGATCACATGATGGGGATATAAATCAGTCTGATTGCTGCAATTCACAACAATAATA ACCTTATCTACCCGTGAATTGCAAGTAGGGAAGATCTCCTAGGT ATTTAGGCTAGAAATAGGTAGCATGGTTAGTCCAACCTTCGAAAACAAGAGGAACTGTTTGTGTGTTAGTGTCATTGGCTGTTAAGGGTGCTGTGCTTATTCTTTAATGCTGTGGAAACAAGGACAGCAAGAAAGCTCATTTTTATGTTCTTGCACCAGAACTGCTTTTGCTTTGACAGTTCC ] [+] EMBL CB640418 [ GTCGTTCTCCTCCCGTCGCGGCGAGCCCACGGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTGATCCCTTCCATTTCGTCCTAGTTCGCTCCGTGCTGTATAGCCTTTGCTGTGGGGATAATGGCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCGCCTTCTCCGATCGGCGGCGGTGGCGTGGGCGG ] [-] EMBL CF279643 [ GGCGCAGGCATGGGAGCTGCTCCTCAGCCAGGCCTGGATCACATGATGGGGATATAAATCAGTCTGATTGCTGCAATTCACAACAATAATACACCTTATCTACCCGTGAATTGCAAGTAGGGAAGATCTCCTAGGTGATTTAGGCTAGAAATAGGTAGCATGGTTAGTCCAACCTTCGAAAACAAGAGGAACTGTTTGTGTGTTAGTGTCATTGGCTGTTAAGGGTGCTGTGCTTATTCTTTAATGCTGTGGAAACAAGGACAGCAAGAAAGCTCATTTTTATGTTCTTGCACCAGAACTGCTTTTGCTTTGACAGTTCCAACGTTTAAGAAAAAAAGAGGAAGAGCTTAGGTTTGATAATTTATTCCATGAGGAGCATACCCGAAGGAAGACTATGTTGTATGCTGCCTTTGGGTGATGATGTTTAATTGTGGTGTGATGTGCAACCGTTTACAAGTAATGTTTGTACAGGCCAGCCTTGTCGTAGGCTTTGTCTTTGTAAAAAAAAAAA] consensusID : consensus_7226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [AGTTTCTCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCACGGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTGATCCCTTCCATTTCGTCCTAGTTCGCTTCGTGCTGTATAGCCTTTGCTGTGGGGATAATGGCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCGCCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCAAAGAAAAGAGAGATATTTCAAGATCTGGCCCCCACTTCTTGGCATTCTTTTGGAACAGTT] [+] EMBL CF279644 [AGTTTCTCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCACGGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTGATCCCTTCCATTTCGTCCTAGTTCGCTTCGTGCTGTATAGCCTTTGCTGTGGGGATAATGGCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCGCCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATGAAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAACGCCCTCCTCGAGCTCTCAAAGAAAAGAGAGATATTTCAAGATCTGGCCCCCACTTCTTGGCATTCTTTTGGAACAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7226#0 GTCCGTGTGGCGCCATAGGGGGCGACAGAGGGGATCTCTCTCCCCTCGGCTTTCGCCTCG 60 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 GCTGCAGTTTCGCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCAC 120 consensus_7226#1 -----AGTTTCTCATTATTCCGACTTCGCCGTCGTTCTCCTCCCGTCGCGGCGAGCCCAC 55 ****** ************************************************ consensus_7226#0 GGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTG 180 consensus_7226#1 GGCGGCCGCGGCGCCGCCGGAGAGGAGCGGAGAGTGGTGATCCGTCGCGGAATTCGGGTG 115 ************************************************************ consensus_7226#0 ATCCCTTCCATTTCGTCCTAGTTCGCTCCGTGCTGTATAGCCTTTGCTGTGGGGATAATG 240 consensus_7226#1 ATCCCTTCCATTTCGTCCTAGTTCGCTTCGTGCTGTATAGCCTTTGCTGTGGGGATAATG 175 *************************** ******************************** consensus_7226#0 GCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCG 300 consensus_7226#1 GCGAATCTGCAGCCCTCGCTTTCCATTCCGCCCTCCTTCGCCGGGGCCTCGCCGCCATCG 235 ************************************************************ consensus_7226#0 CCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATG 360 consensus_7226#1 CCTTCTCCGATCGGCGGCGGTGGCGTGGGCGGCGGGGTGGGGCAGCCAGCCAAGGATATG 295 ************************************************************ consensus_7226#0 AAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAAC 420 consensus_7226#1 AAGATGGCGTCGGCGGAGCAGCTGGTGCTCGACCTCTGCGACCCCGAGCTTCGCGAGAAC 355 ************************************************************ consensus_7226#0 GCCCTCCTCGAGCTCTCAAAGACTTCATGTTCCAGTCATTAACATGATAAGCCAGTTTAT 480 consensus_7226#1 GCCCTCCTCGAGCTCTCAAAGA-------------------------------------- 377 ********************** consensus_7226#0 TTGGTCAAAAAAAATTCAATCCTTTCTTTTCAGAAAAGAGAGATATTTCAAGATCTGGCC 540 consensus_7226#1 ----------------------------------AAAGAGAGATATTTCAAGATCTGGCC 403 ************************** consensus_7226#0 CCACTTCTTTGGCATTCTTTTGGAACAGTTGCTGCACTTCTTCAGGAAATTGTGTCAATC 600 consensus_7226#1 CCCACTTCTTGGCATTCTTTTGGAACAGTT------------------------------ 433 ** * ********************** consensus_7226#0 TACTCTGCACTTTCACCCCCAACATTGTCACCAGGTGCATCGAACCGAGTCTGCAATGCA 660 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 CTTGCACTTCTTCAGCTCATATTCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCA 720 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 AGACAAGACCTTTTGAATACCTGCGACTCACCAGCCTGGGTGTCATCGGTGCACTTGTTA 780 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 AGGTTGATGATACTGAAGTTATCAGTTTTCTGCTGCAAACTGAAATAATTCCTCTGTGTT 840 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 TGCGTACCATGGAAATGGGAAGTGAGCTGTCAAAAACTGTGGCCACCTTCATTGTTCAGA 900 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 AGATTCTCCTCGATGATGTTGGATTGCGCTACATTTGTGCCACTGCTGAGCGTTTCTTTG 960 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 CTGTAGGCAGTGTTTTAGCAAACATGGTAGTTTCACTTGCTGAGCAGCCTTCCACAAGGT 1020 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 TGCTGAAGCACATTATCCGATGTTACCTTAGGCTGTCAGACAATTCCAGGGCATGTGCTG 1080 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 CACTACAAACTTGCCTCCCTGACATGCTGAAGGATGGCACGTTCAATAACTGTCTTAGGG 1140 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 ATGATCCTACAACAAGGCGCTGGCTCCAGCAATTGCTTCTTAATGTGACAGGCGCAGGCA 1200 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 TGGGAGCTGCTCCTCAGCCAGGCCTGGATCACATGATGGGGATATAAATCAGTCTGATTG 1260 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 CTGCAATTCACAACAATAATAACCTTATCTACCCGTGAATTGCAAGTAGGGAAGATCTCC 1320 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 TAGGTATTTAGGCTAGAAATAGGTAGCATGGTTAGTCCAACCTTCGAAAACAAGAGGAAC 1380 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 TGTTTGTGTGTTAGTGTCATTGGCTGTTAAGGGTGCTGTGCTTATTCTTTAATGCTGTGG 1440 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 AAACAAGGACAGCAAGAAAGCTCATTTTTATGTTCTTGCACCAGAACTGCTTTTGCTTTG 1500 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 ACAGTTCCAACGTTTAAGAAAAAAAGAGGAAGAGCTTAGGTTTGATAATTTATTCCATGA 1560 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 GGAGCATACCCGAAGGAAGACTATGTTGTATGCTGCCTTTGGGTGATGATGTTTAATTGT 1620 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 GGTGTGATGTGCAACCGTTTACAAGTAATGTTTGTACAGGCCAGCCTTGTCGTAGGCTTT 1680 consensus_7226#1 ------------------------------------------------------------ consensus_7226#0 GTCTTTGTAAAAAAAAAAA 1699 consensus_7226#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||