cluster # 7229

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7229 cluster # 7229 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7229#0 length = 608 sequences # 2

consensus_7229#1 length = 323 sequences # 1
consensus_7229#2 length = 310 sequences # 1

consensusID : consensus_7229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 608
fasta sequence

                              [CGGCCACCAGCCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCCGACGTCGACGCGCTGCTCCACCGCGCCGCCGAGTACATCTGCGCCCTGGAGGTCAAGGTCGCCGTCCTCCGCAAGCTCTCCGCCATCTACGGCGCTTAATTAGGCTCATGCATATGCACCACGGACAGCCATGTCGCCGCCGCCATCGCCGTTCTGCATGCATGCCAGTGTCGCCGGCCATGCACTGTACATGTAGCCTATGTAGGAAGGAGAACGAAGGCCGGGAGGAGCAGCTAGCCACCTCCATTTCTCTGATCTACCCCTTTCTCTCAGCTAGCTTAGCTCTCTCCCATCTTCTATCACCCCCCACAACTAGTAGTGTAGTAGCATATCATGTGCCTCCTGTAATACAATATGTGATTATTGGTTAATTGGTCACATATGGGAGTGCGTTAATTATCGATCACTTATTAATTAGCCTGGCTAGCTAAACTAGCTGCAGAATCAAAGCTAGCCAAACCGTTTATTCTCTTCAGTTGTTACTACCAAGGAAATGTTTTGACTGGTGTTTGTTAGTTGGCTGGGAAAATGAAGAAATATGCATGCATGATTCAAGTAAAA]

[+] EMBL AU183919             [CGGCCACCAGCCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCCGACGTCGACGCGCTGCTCCACCGCGCCGCCGAGTACATCTGCGCCCTGGAGGTCAAGGTCGCCGTCCTCCGCAAGCTCTCCGCCATCTACGGCGCTTAATTAGGCTCATGCATATGCACCACGGACAGCCATGTCGCCGCCGCCATCGCCGTTCTGCATGCATGCCAGTGTCGCCGGCCATGCACTGTACATGTAGCCTATGTAGGAAGGAGAACGAAGGCCGGGAGGAGCAGCTAGCCACCTCCATTTCTCTGATCTACCCCTTTCTCTCAGCTAGCTTAGCTCTCTCCCATCTTCTATCACCCCCCACAACTAGTAGTGTAGTAGCATATCATGTGCCTCCTGTAATACAATATGTGATTATTGGTTAATTGGTCACATAT                                                                                                                                                                                  ]
[+] EMBL AU058162             [                                                                                                                                                                                                                                                                                                                 ACCCCTTTCTCTCAGCTAGCTTAGCTCTCTCCCATCTTCTATCACCCCCCACAACTAGTAGTGTAGTAGCATATCATGTGCCTCCTGTAATACAATATGTGATTATTGGTTAATTGGTCACATATGGGAGTGCGTTAATTATCGATCACTTATTAATTAGCCTGGCTAGCTAAACTAGCTGCAGAATCAAAGCTAGCCAAACCGTTTATTCTCTTCAGTTGTTACTACCAAGGAAATGTTTTGACTGGTGTTTGTTAGTTGGCTGGGAAAATGAAGAAATATGCATGCATGATTCAAGTAAAA]




>consensus_7229#0
CGGCCACCAGCCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCCGACGTCGACGCGC
TGCTCCACCGCGCCGCCGAGTACATCTGCGCCCTGGAGGTCAAGGTCGCCGTCCTCCGCA
AGCTCTCCGCCATCTACGGCGCTTAATTAGGCTCATGCATATGCACCACGGACAGCCATG
TCGCCGCCGCCATCGCCGTTCTGCATGCATGCCAGTGTCGCCGGCCATGCACTGTACATG
TAGCCTATGTAGGAAGGAGAACGAAGGCCGGGAGGAGCAGCTAGCCACCTCCATTTCTCT
GATCTACCCCTTTCTCTCAGCTAGCTTAGCTCTCTCCCATCTTCTATCACCCCCCACAAC
TAGTAGTGTAGTAGCATATCATGTGCCTCCTGTAATACAATATGTGATTATTGGTTAATT
GGTCACATATGGGAGTGCGTTAATTATCGATCACTTATTAATTAGCCTGGCTAGCTAAAC
TAGCTGCAGAATCAAAGCTAGCCAAACCGTTTATTCTCTTCAGTTGTTACTACCAAGGAA
ATGTTTTGACTGGTGTTTGTTAGTTGGCTGGGAAAATGAAGAAATATGCATGCATGATTC
AAGTAAAA

consensusID : consensus_7229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [AACAAGCCTACAACTCATATTGTAGTAGTTGCAGACATTGTTGAGAGAGAGGGAGATGACAAGGAAGTCCATGGTGGCAGTGGGGAGGAGCAATGGGAGGAGCAGCGGTGGAGGGATGGTGTCATTGAGGAGGAGGAGGCCGTTCCAGCTGATGGTGCTGAGGCGGCTCCGGGAGCTGAAGAAGATCGTGCCGGCCACCAGNCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCNACGTNCGGACGCGCTGCTCCACCGCGCCGCCGAGTACATCTTNCGCCCTGGAGGTCAAGGTCGCCGTNCTTCGCAAGCTTTTCCG]

[+] EMBL OSC29292             [AACAAGCCTACAACTCATATTGTAGTAGTTGCAGACATTGTTGAGAGAGAGGGAGATGACAAGGAAGTCCATGGTGGCAGTGGGGAGGAGCAATGGGAGGAGCAGCGGTGGAGGGATGGTGTCATTGAGGAGGAGGAGGCCGTTCCAGCTGATGGTGCTGAGGCGGCTCCGGGAGCTGAAGAAGATCGTGCCGGCCACCAGNCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCNACGTNCGGACGCGCTGCTCCACCGCGCCGCCGAGTACATCTTNCGCCCTGGAGGTCAAGGTCGCCGTNCTTCGCAAGCTTTTCCG]




>consensus_7229#1
AACAAGCCTACAACTCATATTGTAGTAGTTGCAGACATTGTTGAGAGAGAGGGAGATGAC
AAGGAAGTCCATGGTGGCAGTGGGGAGGAGCAATGGGAGGAGCAGCGGTGGAGGGATGGT
GTCATTGAGGAGGAGGAGGCCGTTCCAGCTGATGGTGCTGAGGCGGCTCCGGGAGCTGAA
GAAGATCGTGCCGGCCACCAGNCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCNAC
GTNCGGACGCGCTGCTCCACCGCGCCGCCGAGTACATCTTNCGCCCTGGAGGTCAAGGTC
GCCGTNCTTCGCAAGCTTTTCCG

consensusID : consensus_7229#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence

                              [CGCCANTCGCCGTTCTGCATGNATGCCNGTNTCGCCGGCCATGCNNTGTACATGTAGCCTATGTAGGAAGGTGANCGAAGGCCGGGNGGTGCNGNTAGCCACCTCCATTTCTCTGATCTACCCCTTTCTCTCNGCTNGCTTAGCTCTCTCCCATCTTNTNTCNCCCCCCCCAACTNGTAGTGTAGTAGCATATCATGTGCCNCCTGTAATACAATATGTGATTATTGGTTAATTGGTCNCATATGGGGGTGNGTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU164762             [CGCCANTCGCCGTTCTGCATGNATGCCNGTNTCGCCGGCCATGCNNTGTACATGTAGCCTATGTAGGAAGGTGANCGAAGGCCGGGNGGTGCNGNTAGCCACCTCCATTTCTCTGATCTACCCCTTTCTCTCNGCTNGCTTAGCTCTCTCCCATCTTNTNTCNCCCCCCCCAACTNGTAGTGTAGTAGCATATCATGTGCCNCCTGTAATACAATATGTGATTATTGGTTAATTGGTCNCATATGGGGGTGNGTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7229#2
CGCCANTCGCCGTTCTGCATGNATGCCNGTNTCGCCGGCCATGCNNTGTACATGTAGCCT
ATGTAGGAAGGTGANCGAAGGCCGGGNGGTGCNGNTAGCCACCTCCATTTCTCTGATCTA
CCCCTTTCTCTCNGCTNGCTTAGCTCTCTCCCATCTTNTNTCNCCCCCCCCAACTNGTAG
TGTAGTAGCATATCATGTGCCNCCTGTAATACAATATGTGATTATTGGTTAATTGGTCNC
ATATGGGGGTGNGTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7229#0      CGGCCACCAGCCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCCGACGTCGACGCGC 60
consensus_7229#2      ------------------------------------------------------------
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      TGCTCCACCGCGCCGCCGAGTACATCTGCGCCCTGGAGGTCAAGGTCGCCGTCCTCCGCA 120
consensus_7229#2      ------------------------------------------------------------
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      AGCTCTCCGCCATCTACGGCGCTTAATTAGGCTCATGCATATGCACCACGGACAGCCATG 180
consensus_7229#2      ------------------------------------------------------------
consensus_7229#1      --------------------------------------------------------AACA 4
                                                                                  

consensus_7229#0      TCGCCGCCGCCATCGCCGTTCTGCATGCATGCCAGTGTCGCCGGCCATGCACTGTACATG 240
consensus_7229#2      ----CGCCAN--TCGCCGTTCTGCATGNATGCCNGTNTCGCCGGCCATGCNNTGTACATG 54
consensus_7229#1      AGCCTACAACTCATATTGTAGTAGTTGCAGACATTGTTGAGAGAGAGGGAGATGACAAGG 64
                            *          **  *   ** *  *     *    *     *   **   * *

consensus_7229#0      TAGCCTATGTAGGAAG-GAGAACGAAGGCCGGGAGGAGCAGCTA------GCCACCTCCA 293
consensus_7229#2      TAGCCTATGTAGGAAG-GTGANCGAAGGCCGGGNGGTGCNGNTA------GCCACCTCCA 107
consensus_7229#1      AAGTCCATGGTGGCAGTGGGGAGGAGCAATGGGAGGAGCAGCGGTGGAGGGATGGTGTCA 124
                       ** * ***  ** ** * *   **     *** ** ** *         *       **

consensus_7229#0      TTTCTCTGATCTACCCCTTTCTCTCAGCTAG--CTTAGCTCTCTCCC--ATCTTCT---- 345
consensus_7229#2      TTTCTCTGATCTACCCCTTTCTCTCNGCTNG--CTTAGCTCTCTCCC--ATCTTNT---- 159
consensus_7229#1      TTGAGGAGGAGGAGGCCGTTCCAGCTGATGGTGCTGAGGCGGCTCCGGGAGCTGAAGAAG 184
                      **     *    *  ** ***   * * * *  ** **    ****   * **       

consensus_7229#0      ATCACCCCCCACAACTAGTAGTGTAGTAGCATATCATGTGCCTCCTGTAATACAATATGT 405
consensus_7229#2      NTCNCCCCCCCCAACTNGTAGTGTAGTAGCATATCATGTGCCNCCTGTAATACAATATGT 219
consensus_7229#1      ATCGTGCCGGCCACCAGNCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCNACGTNC 244
                       **   **   ** *       * ** ***       * * *  * *     * *  *  

consensus_7229#0      GATTATTGGTTAATTGGTCACATATGGGAGTGCGTTAATTATCGATCACTTATTAATTAG 465
consensus_7229#2      GATTATTGGTTAATTGGTCNCATATGGGGGTGNGTTNAAAAAAAAAAAAAAAAAAAAAAA 279
consensus_7229#1      GGACGC--GCTGCTCCACCGCGCCGCCGAGTACATCTTNCGCCCTGGAGGTCAAGGTCGC 302
                      *       * *  *    * *      * **   *            *            

consensus_7229#0      CCTGGCTAGCTAAACTAGCTGCAGAATCAAAGCTAGCCAAACCGTTTATTCTCTTCAGTT 525
consensus_7229#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 310
consensus_7229#1      CGTNCTTCGCAAGCTTTTCCG--------------------------------------- 323
                                 *                                                

consensus_7229#0      GTTACTACCAAGGAAATGTTTTGACTGGTGTTTGTTAGTTGGCTGGGAAAATGAAGAAAT 585
consensus_7229#2      ------------------------------------------------------------
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      ATGCATGCATGATTCAAGTAAAA 608
consensus_7229#2      -----------------------
consensus_7229#1      -----------------------