These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence [CGGCCACCAGCCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCCGACGTCGACGCGCTGCTCCACCGCGCCGCCGAGTACATCTGCGCCCTGGAGGTCAAGGTCGCCGTCCTCCGCAAGCTCTCCGCCATCTACGGCGCTTAATTAGGCTCATGCATATGCACCACGGACAGCCATGTCGCCGCCGCCATCGCCGTTCTGCATGCATGCCAGTGTCGCCGGCCATGCACTGTACATGTAGCCTATGTAGGAAGGAGAACGAAGGCCGGGAGGAGCAGCTAGCCACCTCCATTTCTCTGATCTACCCCTTTCTCTCAGCTAGCTTAGCTCTCTCCCATCTTCTATCACCCCCCACAACTAGTAGTGTAGTAGCATATCATGTGCCTCCTGTAATACAATATGTGATTATTGGTTAATTGGTCACATATGGGAGTGCGTTAATTATCGATCACTTATTAATTAGCCTGGCTAGCTAAACTAGCTGCAGAATCAAAGCTAGCCAAACCGTTTATTCTCTTCAGTTGTTACTACCAAGGAAATGTTTTGACTGGTGTTTGTTAGTTGGCTGGGAAAATGAAGAAATATGCATGCATGATTCAAGTAAAA] [+] EMBL AU183919 [CGGCCACCAGCCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCCGACGTCGACGCGCTGCTCCACCGCGCCGCCGAGTACATCTGCGCCCTGGAGGTCAAGGTCGCCGTCCTCCGCAAGCTCTCCGCCATCTACGGCGCTTAATTAGGCTCATGCATATGCACCACGGACAGCCATGTCGCCGCCGCCATCGCCGTTCTGCATGCATGCCAGTGTCGCCGGCCATGCACTGTACATGTAGCCTATGTAGGAAGGAGAACGAAGGCCGGGAGGAGCAGCTAGCCACCTCCATTTCTCTGATCTACCCCTTTCTCTCAGCTAGCTTAGCTCTCTCCCATCTTCTATCACCCCCCACAACTAGTAGTGTAGTAGCATATCATGTGCCTCCTGTAATACAATATGTGATTATTGGTTAATTGGTCACATAT ] [+] EMBL AU058162 [ ACCCCTTTCTCTCAGCTAGCTTAGCTCTCTCCCATCTTCTATCACCCCCCACAACTAGTAGTGTAGTAGCATATCATGTGCCTCCTGTAATACAATATGTGATTATTGGTTAATTGGTCACATATGGGAGTGCGTTAATTATCGATCACTTATTAATTAGCCTGGCTAGCTAAACTAGCTGCAGAATCAAAGCTAGCCAAACCGTTTATTCTCTTCAGTTGTTACTACCAAGGAAATGTTTTGACTGGTGTTTGTTAGTTGGCTGGGAAAATGAAGAAATATGCATGCATGATTCAAGTAAAA] consensusID : consensus_7229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [AACAAGCCTACAACTCATATTGTAGTAGTTGCAGACATTGTTGAGAGAGAGGGAGATGACAAGGAAGTCCATGGTGGCAGTGGGGAGGAGCAATGGGAGGAGCAGCGGTGGAGGGATGGTGTCATTGAGGAGGAGGAGGCCGTTCCAGCTGATGGTGCTGAGGCGGCTCCGGGAGCTGAAGAAGATCGTGCCGGCCACCAGNCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCNACGTNCGGACGCGCTGCTCCACCGCGCCGCCGAGTACATCTTNCGCCCTGGAGGTCAAGGTCGCCGTNCTTCGCAAGCTTTTCCG] [+] EMBL OSC29292 [AACAAGCCTACAACTCATATTGTAGTAGTTGCAGACATTGTTGAGAGAGAGGGAGATGACAAGGAAGTCCATGGTGGCAGTGGGGAGGAGCAATGGGAGGAGCAGCGGTGGAGGGATGGTGTCATTGAGGAGGAGGAGGCCGTTCCAGCTGATGGTGCTGAGGCGGCTCCGGGAGCTGAAGAAGATCGTGCCGGCCACCAGNCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCNACGTNCGGACGCGCTGCTCCACCGCGCCGCCGAGTACATCTTNCGCCCTGGAGGTCAAGGTCGCCGTNCTTCGCAAGCTTTTCCG] consensusID : consensus_7229#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [CGCCANTCGCCGTTCTGCATGNATGCCNGTNTCGCCGGCCATGCNNTGTACATGTAGCCTATGTAGGAAGGTGANCGAAGGCCGGGNGGTGCNGNTAGCCACCTCCATTTCTCTGATCTACCCCTTTCTCTCNGCTNGCTTAGCTCTCTCCCATCTTNTNTCNCCCCCCCCAACTNGTAGTGTAGTAGCATATCATGTGCCNCCTGTAATACAATATGTGATTATTGGTTAATTGGTCNCATATGGGGGTGNGTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU164762 [CGCCANTCGCCGTTCTGCATGNATGCCNGTNTCGCCGGCCATGCNNTGTACATGTAGCCTATGTAGGAAGGTGANCGAAGGCCGGGNGGTGCNGNTAGCCACCTCCATTTCTCTGATCTACCCCTTTCTCTCNGCTNGCTTAGCTCTCTCCCATCTTNTNTCNCCCCCCCCAACTNGTAGTGTAGTAGCATATCATGTGCCNCCTGTAATACAATATGTGATTATTGGTTAATTGGTCNCATATGGGGGTGNGTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7229#0 CGGCCACCAGCCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCCGACGTCGACGCGC 60 consensus_7229#2 ------------------------------------------------------------ consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 TGCTCCACCGCGCCGCCGAGTACATCTGCGCCCTGGAGGTCAAGGTCGCCGTCCTCCGCA 120 consensus_7229#2 ------------------------------------------------------------ consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 AGCTCTCCGCCATCTACGGCGCTTAATTAGGCTCATGCATATGCACCACGGACAGCCATG 180 consensus_7229#2 ------------------------------------------------------------ consensus_7229#1 --------------------------------------------------------AACA 4 consensus_7229#0 TCGCCGCCGCCATCGCCGTTCTGCATGCATGCCAGTGTCGCCGGCCATGCACTGTACATG 240 consensus_7229#2 ----CGCCAN--TCGCCGTTCTGCATGNATGCCNGTNTCGCCGGCCATGCNNTGTACATG 54 consensus_7229#1 AGCCTACAACTCATATTGTAGTAGTTGCAGACATTGTTGAGAGAGAGGGAGATGACAAGG 64 * ** * ** * * * * * ** * * consensus_7229#0 TAGCCTATGTAGGAAG-GAGAACGAAGGCCGGGAGGAGCAGCTA------GCCACCTCCA 293 consensus_7229#2 TAGCCTATGTAGGAAG-GTGANCGAAGGCCGGGNGGTGCNGNTA------GCCACCTCCA 107 consensus_7229#1 AAGTCCATGGTGGCAGTGGGGAGGAGCAATGGGAGGAGCAGCGGTGGAGGGATGGTGTCA 124 ** * *** ** ** * * ** *** ** ** * * ** consensus_7229#0 TTTCTCTGATCTACCCCTTTCTCTCAGCTAG--CTTAGCTCTCTCCC--ATCTTCT---- 345 consensus_7229#2 TTTCTCTGATCTACCCCTTTCTCTCNGCTNG--CTTAGCTCTCTCCC--ATCTTNT---- 159 consensus_7229#1 TTGAGGAGGAGGAGGCCGTTCCAGCTGATGGTGCTGAGGCGGCTCCGGGAGCTGAAGAAG 184 ** * * ** *** * * * * ** ** **** * ** consensus_7229#0 ATCACCCCCCACAACTAGTAGTGTAGTAGCATATCATGTGCCTCCTGTAATACAATATGT 405 consensus_7229#2 NTCNCCCCCCCCAACTNGTAGTGTAGTAGCATATCATGTGCCNCCTGTAATACAATATGT 219 consensus_7229#1 ATCGTGCCGGCCACCAGNCGCCGCAGCAGCGGTGGTCGCGGCGGCGGCGGCGCNACGTNC 244 ** ** ** * * ** *** * * * * * * * * consensus_7229#0 GATTATTGGTTAATTGGTCACATATGGGAGTGCGTTAATTATCGATCACTTATTAATTAG 465 consensus_7229#2 GATTATTGGTTAATTGGTCNCATATGGGGGTGNGTTNAAAAAAAAAAAAAAAAAAAAAAA 279 consensus_7229#1 GGACGC--GCTGCTCCACCGCGCCGCCGAGTACATCTTNCGCCCTGGAGGTCAAGGTCGC 302 * * * * * * * ** * * consensus_7229#0 CCTGGCTAGCTAAACTAGCTGCAGAATCAAAGCTAGCCAAACCGTTTATTCTCTTCAGTT 525 consensus_7229#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 310 consensus_7229#1 CGTNCTTCGCAAGCTTTTCCG--------------------------------------- 323 * consensus_7229#0 GTTACTACCAAGGAAATGTTTTGACTGGTGTTTGTTAGTTGGCTGGGAAAATGAAGAAAT 585 consensus_7229#2 ------------------------------------------------------------ consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 ATGCATGCATGATTCAAGTAAAA 608 consensus_7229#2 ----------------------- consensus_7229#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||