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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1835 fasta sequence
[CACTGAACACCCCCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCCGTCTTCTTCCATCGCTGCCGCAACGGCGCGCGCTTGCGCGTCAGGAGGAGAAGTCGGCGGCGGCCATGGGGAGCTGCTTCTCATCGGAGGGCGGCAACGAGAGCAGGAAGGAGTCCGCGGAGAGGCCACAGATCACACCGGACGAGACGGCCGCCTCAGAGATGGATGTGAATTTAAATACCACAAATGCTGATTCCATCTCGAACCATGGTATGGAGAGGCTTATTCATGGCCAGTCATTCACCTACGGGGAGCTGTATGCGGCGACAGGGGGCTTCAGTGACGATCGCTTTCTAGGAGAGGGCGGGTTTGGCCAGGTGTATAGGGGCGTGCTGGATAACTCCCAGGAGGTGGCTATAAAGATTCTTAATCTACAAGGCAATCAAGGAGACAGGGAGTTCATCACCGAAGCTTCAGTGTTGAGTAAACTACATCACACAAATCTTGTCAAGCTTATTGGCTGTTGTCAGGATGGTGATCAGAGGCTTTTAGTTTATGAATACATGCCTTTGGGTTCCCTGAAAAGTCATCTCCATGATCTTTCCCCTGATAAGAAGCCTCTTGACTGGAACACAAGGATCAAGATACTTGTCGGGGCAGCTAAAGGCCTGCAGCACTTGCATGTCAATGTTGACCCTCCCGTCATAAACCGCGACGTGAAATCTGAAAACATTTTGCTTGGAGATGGATATCATCCAAAGCTTTCTGACTTTGGCTTGGCAAAGATGGGTCCAACTGGTGATGACACTCATATTTCGACTAGAGTGATGGGCACACTTGGATATTGTGCTCCTGATTATCTTGAGAGTGGTAAACTGACCGTCCAGTCAGATATTTACAGCTTTGGTGTGGTCATGTTGGAGGTCATCACAGGACAAAAGGTTATAGATGACAGTCGAGCTAAGCCTGAGCGAAATATTGTTGAATGGGCCATCCCCAAGATCAACAAAAAGGATTTTCCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTGTTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGATATCACAGCAGTAGTTGATGCTCTTACTCAGATCTCAGAGTCACAATCCAGCAGAAAGCGGTGGTCATCTCGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAAGATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGCAACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGATGGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATGGTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTCTTCTGTACATGGATGAGGCTTGT-CA-TTTTGTTGTCTTTCGACATAGAGCT-CCATACT-CCGAAAG-CAT-CT-CCAGATGGTTTCATGGC-ATTGCT-CCT-AT-GTTGAAA-TCAGGATGAGATGGGTCTCACGTTTGCTT-CCCTT-TGTTGTATGGATGTACTTAA-AAGGGAT-TAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGTTACA-CCGAAGTGTCAGTTCAACCTCTGTCCATTTGTTGTATGGATGGACTTAAAAGGGGTTAAAGCTTCTCTCTTTGGATACAACTTTGGTTCAAGGTTATACCCAAGT-GTCAGATCAAACTCAGTCCATTTGAGTATGGATGCACTTAAAAAAA]
[+] EMBL AK105569 [CACTGAACACCCCCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCCGTCTTCTTCCATCGCTGCCGCAACGGCGCGCGCTTGCGCGTCAGGAGGAGAAGTCGGCGGCGGCCATGGGGAGCTGCTTCTCATCGGAGGGCGGCAACGAGAGCAGGAAGGAGTCCGCGGAGAGGCCACAGATCACACCGGACGAGACGGCCGCCTCAGAGATGGATGTGAATTTAAATACCACAAATGCTGATTCCATCTCGAACCATGGTATGGAGAGGCTTATTCATGGCCAGTCATTCACCTACGGGGAGCTGTATGCGGCGACAGGGGGCTTCAGTGACGATCGCTTTCTAGGAGAGGGCGGGTTTGGCCAGGTGTATAGGGGCGTGCTGGATAACTCCCAGGAGGTGGCTATAAAGATTCTTAATCTACAAGGCAATCAAGGAGACAGGGAGTTCATCACCGAAGCTTCAGTGTTGAGTAAACTACATCACACAAATCTTGTCAAGCTTATTGGCTGTTGTCAGGATGGTGATCAGAGGCTTTTAGTTTATGAATACATGCCTTTGGGTTCCCTGAAAAGTCATCTCCATGATCTTTCCCCTGATAAGAAGCCTCTTGACTGGAACACAAGGATCAAGATACTTGTCGGGGCAGCTAAAGGCCTGCAGCACTTGCATGTCAATGTTGACCCTCCCGTCATAAACCGCGACGTGAAATCTGAAAACATTTTGCTTGGAGATGGATATCATCCAAAGCTTTCTGACTTTGGCTTGGCAAAGATGGGTCCAACTGGTGATGACACTCATATTTCGACTAGAGTGATGGGCACACTTGGATATTGTGCTCCTGATTATCTTGAGAGTGGTAAACTGACCGTCCAGTCAGATATTTACAGCTTTGGTGTGGTCATGTTGGAGGTCATCACAGGACAAAAGGTTATAGATGACAGTCGAGCTAAGCCTGAGCGAAATATTGTTGAATGGGCCATCCCCAAGATCAACAAAAAGGATTTTCCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTGTTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGATATCACAGCAGTAGTTGATGCTCTTACTCAGATCTCAGAGTCACAATCCAGCAGAAAGCGGTGGTCATCTCGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAAGATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGCAACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGATGGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATGGTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTCTTCTGTACATGGATGAGGCTTGT CA TTTTGTTGTCTTTCGACATAGAGCT CCATACT CCGAAAG CAT CT CCAGATGGTTTCATGGC ATTGCT CCT AT GTTGAAA TCAGGATGAGATGGGTCTCACGTTTGCTT CCCTT TGTTGTATGGATGTACTTAA AAGGGAT TAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGTTACA CCGAAGTGTCAGTTCAACCTCTGTCCATTTGTTGTAT ]
[+] EMBL CA765002 [ CCGAGGATAGAAGATTGGAACCAAGCCAAGGATCNGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGCAACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGATGGTTACTGCCTGAGAGTAGTAGAAACTGAAGTACAGCGCTGTTCCATTTCGGAACATATGGTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTCTTCTGTACATGGATGAGGCTTGT CA TTTTGTCGTCTTTCGACATAGAGCT CCATACT CCGAAAG CAT CT CCAGATGGTTTCATGGC ATTGCT CCT AT GTTGAAA TCAGGATGAGATGGGTCTCACGTTTGCTT CCCTT TGTTGTATGGATGTACTTAA AAGGGAT TAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGTTACACCCGAAGTGCCAGTTCAACCTCTGTCCATTTGTTGTATGGATGGACTTAAAAGGGGTTAAAGCTTCTCTCTTTGGATACAACTTTGGTTCAAGGTTATACCCAAGT GTCAGATCAAACTCAGTCCATTTGAGTATGGATGC ]
[+] EMBL BI800112 [ GGATGAGGCTTGTGCATTTTTGTTGTCTTTCGACATAGAGCTGCCATACTGCCGAAAGCCATGCTGCCAGATGGTTTCATGGCAATTGCTGCCTGATGGTTGAAATTCAGGATGAGATGGTTCTCACGTTTGCTTACCCTTGTGTTGTATGGATGTACTTAACAAGGGATGTAAAGTTTTTTTTGTGTTTGGATACTACTTTGTTTTAAGGTTACA CCGAAGTGTCAGTTCAACCTCTGTCCATTTGTTGTATGGATGCACTTAAAA GGGTTAAAGCTTCTCTCTTTGGATAC ACTTTGGTTCAAGGTTATACCCAAGTAGTCAGATC AACTCAGTCCATTTGAGTATGGATGCACTTAAAAAAA]
consensusID : consensus_7232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[ATCCCCAAGATCAACAAAAAGGATTTCCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTGTTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGATATCACAGCAGTAGTTGATGCTCTTACTCAGATCTNAGAGTCACAATCCAGCAGAAAGCGGTGGTCATCTNGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAAGATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGCAACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGATGGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATGGTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTTTTCTGTACATGGATGAGGCTTGTCATTTTGTTGTCTTTCGACATAGAGCTCCATACTCCGAAAGCATCTCCAGATGGTTTCATGGCATTGCTCCTATGTTGAAATCAGGATGAGATGGGTCTCACGTTTGCTTCCCTTTGTTGTATGGATGTACTTAAAAGGGATTAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGTTAAAAAAAAAAAAAA]
[-] EMBL CA759924 [ATCCCCAAGATCAACAAAAAGGATTTCCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTGTTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGATATCACAGCAGTAGTTGATGCTCTTACTCAGATCTNAGAGTCACAATCCAGCAGAAAGCGGTGGTCATCTNGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAAGATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGCAACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGATGGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATGGTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTTTTCTGTACATGGATGAGGCTTGTCATTTTGTTGTCTTTCGACATAGAGCTCCATACTCCGAAAGCATCTCCAGATGGTTTCATGGCATTGCTCCTATGTTGAAATCAGGATGAGATGGGTCTCACGTTTGCTTCCCTTTGTTGTATGGATGTACTTAAAAGGGATTAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGTTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7232#0 CACTGAACACCCCCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 60
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 CTCTTCCCCCGTCTTCTTCCATCGCTGCCGCAACGGCGCGCGCTTGCGCGTCAGGAGGAG 120
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 AAGTCGGCGGCGGCCATGGGGAGCTGCTTCTCATCGGAGGGCGGCAACGAGAGCAGGAAG 180
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 GAGTCCGCGGAGAGGCCACAGATCACACCGGACGAGACGGCCGCCTCAGAGATGGATGTG 240
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 AATTTAAATACCACAAATGCTGATTCCATCTCGAACCATGGTATGGAGAGGCTTATTCAT 300
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 GGCCAGTCATTCACCTACGGGGAGCTGTATGCGGCGACAGGGGGCTTCAGTGACGATCGC 360
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 TTTCTAGGAGAGGGCGGGTTTGGCCAGGTGTATAGGGGCGTGCTGGATAACTCCCAGGAG 420
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 GTGGCTATAAAGATTCTTAATCTACAAGGCAATCAAGGAGACAGGGAGTTCATCACCGAA 480
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 GCTTCAGTGTTGAGTAAACTACATCACACAAATCTTGTCAAGCTTATTGGCTGTTGTCAG 540
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 GATGGTGATCAGAGGCTTTTAGTTTATGAATACATGCCTTTGGGTTCCCTGAAAAGTCAT 600
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 CTCCATGATCTTTCCCCTGATAAGAAGCCTCTTGACTGGAACACAAGGATCAAGATACTT 660
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 GTCGGGGCAGCTAAAGGCCTGCAGCACTTGCATGTCAATGTTGACCCTCCCGTCATAAAC 720
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 CGCGACGTGAAATCTGAAAACATTTTGCTTGGAGATGGATATCATCCAAAGCTTTCTGAC 780
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 TTTGGCTTGGCAAAGATGGGTCCAACTGGTGATGACACTCATATTTCGACTAGAGTGATG 840
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 GGCACACTTGGATATTGTGCTCCTGATTATCTTGAGAGTGGTAAACTGACCGTCCAGTCA 900
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 GATATTTACAGCTTTGGTGTGGTCATGTTGGAGGTCATCACAGGACAAAAGGTTATAGAT 960
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 GACAGTCGAGCTAAGCCTGAGCGAAATATTGTTGAATGGGCCATCCCCAAGATCAACAAA 1020
consensus_7232#1 ------------------------------------------ATCCCCAAGATCAACAAA 18
******************
consensus_7232#0 AAGGATTTTCCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTG 1080
consensus_7232#1 AAGGATTT-CCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTG 77
******** ***************************************************
consensus_7232#0 TTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGAT 1140
consensus_7232#1 TTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGAT 137
************************************************************
consensus_7232#0 ATCACAGCAGTAGTTGATGCTCTTACTCAGATCTCAGAGTCACAATCCAGCAGAAAGCGG 1200
consensus_7232#1 ATCACAGCAGTAGTTGATGCTCTTACTCAGATCTNAGAGTCACAATCCAGCAGAAAGCGG 197
********************************** *************************
consensus_7232#0 TGGTCATCTCGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAA 1260
consensus_7232#1 TGGTCATCTNGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAA 257
********* **************************************************
consensus_7232#0 GATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGC 1320
consensus_7232#1 GATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGC 317
************************************************************
consensus_7232#0 AACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGAT 1380
consensus_7232#1 AACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGAT 377
************************************************************
consensus_7232#0 GGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATG 1440
consensus_7232#1 GGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATG 437
************************************************************
consensus_7232#0 GTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTCTTCTGTACATGGATGAGGCTTGTCAT 1500
consensus_7232#1 GTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTTTTCTGTACATGGATGAGGCTTGTCAT 497
********************************* **************************
consensus_7232#0 TTTGTTGTCTTTCGACATAGAGCTCCATACTCCGAAAGCATCTCCAGATGGTTTCATGGC 1560
consensus_7232#1 TTTGTTGTCTTTCGACATAGAGCTCCATACTCCGAAAGCATCTCCAGATGGTTTCATGGC 557
************************************************************
consensus_7232#0 ATTGCTCCTATGTTGAAATCAGGATGAGATGGGTCTCACGTTTGCTTCCCTTTGTTGTAT 1620
consensus_7232#1 ATTGCTCCTATGTTGAAATCAGGATGAGATGGGTCTCACGTTTGCTTCCCTTTGTTGTAT 617
************************************************************
consensus_7232#0 GGATGTACTTAAAAGGGATTAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGT 1680
consensus_7232#1 GGATGTACTTAAAAGGGATTAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGT 677
************************************************************
consensus_7232#0 TACACCGAAGTGTCAGTTCAACCTCTGTCCATTTGTTGTATGGATGGACTTAAAAGGGGT 1740
consensus_7232#1 TAAAAAAAAAAAAAA--------------------------------------------- 692
** * ** *
consensus_7232#0 TAAAGCTTCTCTCTTTGGATACAACTTTGGTTCAAGGTTATACCCAAGTGTCAGATCAAA 1800
consensus_7232#1 ------------------------------------------------------------
consensus_7232#0 CTCAGTCCATTTGAGTATGGATGCACTTAAAAAAA 1835
consensus_7232#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||