These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1835 fasta sequence [CACTGAACACCCCCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCCGTCTTCTTCCATCGCTGCCGCAACGGCGCGCGCTTGCGCGTCAGGAGGAGAAGTCGGCGGCGGCCATGGGGAGCTGCTTCTCATCGGAGGGCGGCAACGAGAGCAGGAAGGAGTCCGCGGAGAGGCCACAGATCACACCGGACGAGACGGCCGCCTCAGAGATGGATGTGAATTTAAATACCACAAATGCTGATTCCATCTCGAACCATGGTATGGAGAGGCTTATTCATGGCCAGTCATTCACCTACGGGGAGCTGTATGCGGCGACAGGGGGCTTCAGTGACGATCGCTTTCTAGGAGAGGGCGGGTTTGGCCAGGTGTATAGGGGCGTGCTGGATAACTCCCAGGAGGTGGCTATAAAGATTCTTAATCTACAAGGCAATCAAGGAGACAGGGAGTTCATCACCGAAGCTTCAGTGTTGAGTAAACTACATCACACAAATCTTGTCAAGCTTATTGGCTGTTGTCAGGATGGTGATCAGAGGCTTTTAGTTTATGAATACATGCCTTTGGGTTCCCTGAAAAGTCATCTCCATGATCTTTCCCCTGATAAGAAGCCTCTTGACTGGAACACAAGGATCAAGATACTTGTCGGGGCAGCTAAAGGCCTGCAGCACTTGCATGTCAATGTTGACCCTCCCGTCATAAACCGCGACGTGAAATCTGAAAACATTTTGCTTGGAGATGGATATCATCCAAAGCTTTCTGACTTTGGCTTGGCAAAGATGGGTCCAACTGGTGATGACACTCATATTTCGACTAGAGTGATGGGCACACTTGGATATTGTGCTCCTGATTATCTTGAGAGTGGTAAACTGACCGTCCAGTCAGATATTTACAGCTTTGGTGTGGTCATGTTGGAGGTCATCACAGGACAAAAGGTTATAGATGACAGTCGAGCTAAGCCTGAGCGAAATATTGTTGAATGGGCCATCCCCAAGATCAACAAAAAGGATTTTCCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTGTTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGATATCACAGCAGTAGTTGATGCTCTTACTCAGATCTCAGAGTCACAATCCAGCAGAAAGCGGTGGTCATCTCGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAAGATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGCAACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGATGGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATGGTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTCTTCTGTACATGGATGAGGCTTGT-CA-TTTTGTTGTCTTTCGACATAGAGCT-CCATACT-CCGAAAG-CAT-CT-CCAGATGGTTTCATGGC-ATTGCT-CCT-AT-GTTGAAA-TCAGGATGAGATGGGTCTCACGTTTGCTT-CCCTT-TGTTGTATGGATGTACTTAA-AAGGGAT-TAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGTTACA-CCGAAGTGTCAGTTCAACCTCTGTCCATTTGTTGTATGGATGGACTTAAAAGGGGTTAAAGCTTCTCTCTTTGGATACAACTTTGGTTCAAGGTTATACCCAAGT-GTCAGATCAAACTCAGTCCATTTGAGTATGGATGCACTTAAAAAAA] [+] EMBL AK105569 [CACTGAACACCCCCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCCGTCTTCTTCCATCGCTGCCGCAACGGCGCGCGCTTGCGCGTCAGGAGGAGAAGTCGGCGGCGGCCATGGGGAGCTGCTTCTCATCGGAGGGCGGCAACGAGAGCAGGAAGGAGTCCGCGGAGAGGCCACAGATCACACCGGACGAGACGGCCGCCTCAGAGATGGATGTGAATTTAAATACCACAAATGCTGATTCCATCTCGAACCATGGTATGGAGAGGCTTATTCATGGCCAGTCATTCACCTACGGGGAGCTGTATGCGGCGACAGGGGGCTTCAGTGACGATCGCTTTCTAGGAGAGGGCGGGTTTGGCCAGGTGTATAGGGGCGTGCTGGATAACTCCCAGGAGGTGGCTATAAAGATTCTTAATCTACAAGGCAATCAAGGAGACAGGGAGTTCATCACCGAAGCTTCAGTGTTGAGTAAACTACATCACACAAATCTTGTCAAGCTTATTGGCTGTTGTCAGGATGGTGATCAGAGGCTTTTAGTTTATGAATACATGCCTTTGGGTTCCCTGAAAAGTCATCTCCATGATCTTTCCCCTGATAAGAAGCCTCTTGACTGGAACACAAGGATCAAGATACTTGTCGGGGCAGCTAAAGGCCTGCAGCACTTGCATGTCAATGTTGACCCTCCCGTCATAAACCGCGACGTGAAATCTGAAAACATTTTGCTTGGAGATGGATATCATCCAAAGCTTTCTGACTTTGGCTTGGCAAAGATGGGTCCAACTGGTGATGACACTCATATTTCGACTAGAGTGATGGGCACACTTGGATATTGTGCTCCTGATTATCTTGAGAGTGGTAAACTGACCGTCCAGTCAGATATTTACAGCTTTGGTGTGGTCATGTTGGAGGTCATCACAGGACAAAAGGTTATAGATGACAGTCGAGCTAAGCCTGAGCGAAATATTGTTGAATGGGCCATCCCCAAGATCAACAAAAAGGATTTTCCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTGTTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGATATCACAGCAGTAGTTGATGCTCTTACTCAGATCTCAGAGTCACAATCCAGCAGAAAGCGGTGGTCATCTCGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAAGATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGCAACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGATGGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATGGTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTCTTCTGTACATGGATGAGGCTTGT CA TTTTGTTGTCTTTCGACATAGAGCT CCATACT CCGAAAG CAT CT CCAGATGGTTTCATGGC ATTGCT CCT AT GTTGAAA TCAGGATGAGATGGGTCTCACGTTTGCTT CCCTT TGTTGTATGGATGTACTTAA AAGGGAT TAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGTTACA CCGAAGTGTCAGTTCAACCTCTGTCCATTTGTTGTAT ] [+] EMBL CA765002 [ CCGAGGATAGAAGATTGGAACCAAGCCAAGGATCNGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGCAACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGATGGTTACTGCCTGAGAGTAGTAGAAACTGAAGTACAGCGCTGTTCCATTTCGGAACATATGGTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTCTTCTGTACATGGATGAGGCTTGT CA TTTTGTCGTCTTTCGACATAGAGCT CCATACT CCGAAAG CAT CT CCAGATGGTTTCATGGC ATTGCT CCT AT GTTGAAA TCAGGATGAGATGGGTCTCACGTTTGCTT CCCTT TGTTGTATGGATGTACTTAA AAGGGAT TAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGTTACACCCGAAGTGCCAGTTCAACCTCTGTCCATTTGTTGTATGGATGGACTTAAAAGGGGTTAAAGCTTCTCTCTTTGGATACAACTTTGGTTCAAGGTTATACCCAAGT GTCAGATCAAACTCAGTCCATTTGAGTATGGATGC ] [+] EMBL BI800112 [ GGATGAGGCTTGTGCATTTTTGTTGTCTTTCGACATAGAGCTGCCATACTGCCGAAAGCCATGCTGCCAGATGGTTTCATGGCAATTGCTGCCTGATGGTTGAAATTCAGGATGAGATGGTTCTCACGTTTGCTTACCCTTGTGTTGTATGGATGTACTTAACAAGGGATGTAAAGTTTTTTTTGTGTTTGGATACTACTTTGTTTTAAGGTTACA CCGAAGTGTCAGTTCAACCTCTGTCCATTTGTTGTATGGATGCACTTAAAA GGGTTAAAGCTTCTCTCTTTGGATAC ACTTTGGTTCAAGGTTATACCCAAGTAGTCAGATC AACTCAGTCCATTTGAGTATGGATGCACTTAAAAAAA] consensusID : consensus_7232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [ATCCCCAAGATCAACAAAAAGGATTTCCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTGTTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGATATCACAGCAGTAGTTGATGCTCTTACTCAGATCTNAGAGTCACAATCCAGCAGAAAGCGGTGGTCATCTNGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAAGATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGCAACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGATGGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATGGTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTTTTCTGTACATGGATGAGGCTTGTCATTTTGTTGTCTTTCGACATAGAGCTCCATACTCCGAAAGCATCTCCAGATGGTTTCATGGCATTGCTCCTATGTTGAAATCAGGATGAGATGGGTCTCACGTTTGCTTCCCTTTGTTGTATGGATGTACTTAAAAGGGATTAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGTTAAAAAAAAAAAAAA] [-] EMBL CA759924 [ATCCCCAAGATCAACAAAAAGGATTTCCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTGTTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGATATCACAGCAGTAGTTGATGCTCTTACTCAGATCTNAGAGTCACAATCCAGCAGAAAGCGGTGGTCATCTNGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAAGATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGCAACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGATGGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATGGTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTTTTCTGTACATGGATGAGGCTTGTCATTTTGTTGTCTTTCGACATAGAGCTCCATACTCCGAAAGCATCTCCAGATGGTTTCATGGCATTGCTCCTATGTTGAAATCAGGATGAGATGGGTCTCACGTTTGCTTCCCTTTGTTGTATGGATGTACTTAAAAGGGATTAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGTTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7232#0 CACTGAACACCCCCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 60 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 CTCTTCCCCCGTCTTCTTCCATCGCTGCCGCAACGGCGCGCGCTTGCGCGTCAGGAGGAG 120 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 AAGTCGGCGGCGGCCATGGGGAGCTGCTTCTCATCGGAGGGCGGCAACGAGAGCAGGAAG 180 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 GAGTCCGCGGAGAGGCCACAGATCACACCGGACGAGACGGCCGCCTCAGAGATGGATGTG 240 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 AATTTAAATACCACAAATGCTGATTCCATCTCGAACCATGGTATGGAGAGGCTTATTCAT 300 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 GGCCAGTCATTCACCTACGGGGAGCTGTATGCGGCGACAGGGGGCTTCAGTGACGATCGC 360 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 TTTCTAGGAGAGGGCGGGTTTGGCCAGGTGTATAGGGGCGTGCTGGATAACTCCCAGGAG 420 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 GTGGCTATAAAGATTCTTAATCTACAAGGCAATCAAGGAGACAGGGAGTTCATCACCGAA 480 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 GCTTCAGTGTTGAGTAAACTACATCACACAAATCTTGTCAAGCTTATTGGCTGTTGTCAG 540 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 GATGGTGATCAGAGGCTTTTAGTTTATGAATACATGCCTTTGGGTTCCCTGAAAAGTCAT 600 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 CTCCATGATCTTTCCCCTGATAAGAAGCCTCTTGACTGGAACACAAGGATCAAGATACTT 660 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 GTCGGGGCAGCTAAAGGCCTGCAGCACTTGCATGTCAATGTTGACCCTCCCGTCATAAAC 720 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 CGCGACGTGAAATCTGAAAACATTTTGCTTGGAGATGGATATCATCCAAAGCTTTCTGAC 780 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 TTTGGCTTGGCAAAGATGGGTCCAACTGGTGATGACACTCATATTTCGACTAGAGTGATG 840 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 GGCACACTTGGATATTGTGCTCCTGATTATCTTGAGAGTGGTAAACTGACCGTCCAGTCA 900 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 GATATTTACAGCTTTGGTGTGGTCATGTTGGAGGTCATCACAGGACAAAAGGTTATAGAT 960 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 GACAGTCGAGCTAAGCCTGAGCGAAATATTGTTGAATGGGCCATCCCCAAGATCAACAAA 1020 consensus_7232#1 ------------------------------------------ATCCCCAAGATCAACAAA 18 ****************** consensus_7232#0 AAGGATTTTCCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTG 1080 consensus_7232#1 AAGGATTT-CCCAAATTAGCAGACCCGGTGCTTAACGGTCAGTACCACATGAGGTCCTTG 77 ******** *************************************************** consensus_7232#0 TTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGAT 1140 consensus_7232#1 TTCCGGGCCCTTACTGTTGCTGCTCTGTGTGTTGACAGAACAGCCAACCGGAGGCCAGAT 137 ************************************************************ consensus_7232#0 ATCACAGCAGTAGTTGATGCTCTTACTCAGATCTCAGAGTCACAATCCAGCAGAAAGCGG 1200 consensus_7232#1 ATCACAGCAGTAGTTGATGCTCTTACTCAGATCTNAGAGTCACAATCCAGCAGAAAGCGG 197 ********************************** ************************* consensus_7232#0 TGGTCATCTCGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAA 1260 consensus_7232#1 TGGTCATCTNGTCTGCAATCATCTGTAGGTTCCAGTGCATCGACTGAACCGAGGATAGAA 257 ********* ************************************************** consensus_7232#0 GATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGC 1320 consensus_7232#1 GATTGGAACCAAGCCAAGGATCAGGGAGAAGGCAGCTAGGAAGCCCAATTGCAGAACAGC 317 ************************************************************ consensus_7232#0 AACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGAT 1380 consensus_7232#1 AACATGGTTTCCCTGTCACTATTAGTCTCAAGCCTTGCTCTTTGTGTCGTGAGCCGTGAT 377 ************************************************************ consensus_7232#0 GGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATG 1440 consensus_7232#1 GGTTACTGCCTGAGAGTAGTAGAAACTGAAGAACAGCGCTGTTCCATTTCGGAACATATG 437 ************************************************************ consensus_7232#0 GTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTCTTCTGTACATGGATGAGGCTTGTCAT 1500 consensus_7232#1 GTTGAATTTCTGGAGGGAACTTCTGTTCCTTTTTTTCTGTACATGGATGAGGCTTGTCAT 497 ********************************* ************************** consensus_7232#0 TTTGTTGTCTTTCGACATAGAGCTCCATACTCCGAAAGCATCTCCAGATGGTTTCATGGC 1560 consensus_7232#1 TTTGTTGTCTTTCGACATAGAGCTCCATACTCCGAAAGCATCTCCAGATGGTTTCATGGC 557 ************************************************************ consensus_7232#0 ATTGCTCCTATGTTGAAATCAGGATGAGATGGGTCTCACGTTTGCTTCCCTTTGTTGTAT 1620 consensus_7232#1 ATTGCTCCTATGTTGAAATCAGGATGAGATGGGTCTCACGTTTGCTTCCCTTTGTTGTAT 617 ************************************************************ consensus_7232#0 GGATGTACTTAAAAGGGATTAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGT 1680 consensus_7232#1 GGATGTACTTAAAAGGGATTAAAGTTTTTTTTGTGTTTGGATACAACTTTGTTTTAAGGT 677 ************************************************************ consensus_7232#0 TACACCGAAGTGTCAGTTCAACCTCTGTCCATTTGTTGTATGGATGGACTTAAAAGGGGT 1740 consensus_7232#1 TAAAAAAAAAAAAAA--------------------------------------------- 692 ** * ** * consensus_7232#0 TAAAGCTTCTCTCTTTGGATACAACTTTGGTTCAAGGTTATACCCAAGTGTCAGATCAAA 1800 consensus_7232#1 ------------------------------------------------------------ consensus_7232#0 CTCAGTCCATTTGAGTATGGATGCACTTAAAAAAA 1835 consensus_7232#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||