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Oryza sativa
cluster # 7234 cluster # 7234       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7234#0 length = 1379 sequences # 4  

consensusID : consensus_7234#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1379
fasta sequence
                              [TCACACACACTCTCATCTTCTTCATCGCAAGCTAGTAAGAGTGAATCGAAGATGATGAAGAAGCTGGTGAGGTTGCTGATCATGGTGGAGGTGGTGGCCATGGCGGCGGCGCCGCGGCGAGCGGCGGCGCTGAGCATGGACTACTACGGGATGAGCTGCCCGTTCGCGGAGATGGTGGTGAGGAGCGTGGTGAGCCAGGCGCTGATGGGCGACCCGTCGCTCGCCGCCAGCCTCCTCCGCCTCCACTTCCATGACTGCTTCGTCCAGGGCTGCGACGCCTCCGTCCTCCTCGACTCCACCCCGGACAACACCGCCGAGAAGGACGCGCTCGCCAACAAGAGCCTCCGCGGCTTCGAGGTCATCGACCGCATCAAGGACGCCCTCGAGTCGCGGTGCCCCGGCGTCGTCTCCTGCGCCGACGTCCTCGCCCTCGCCGCGCGCGACGCCGTCATCATGGCGGGGGGCCCGTACTACGGCGTGGCGACGGGGAGGAGGGACGGGACGCGGTCTAGCGCGGCCGACACGGTGGCGCTGCCGCCGCCGTTCTTGAACGCGACGGCGCTGATCCAGCTGTTCGGGACGCACGGGTTCACCGCGCAGGACATGGTGGCGCTGTCGGGGGGGCACACGCTGGGGCGGGCGCACTGCGCCGACTTCAAGAACCGGGTGGCGACGGAGGCGGCGACGCTGGACGCGGCGCTGGCGTCGTCGCTGGGCAGCACGTGCGCCGCCGGCGGGGACGCCGCGACGGCGACGTTCGACCGGACGAGCAACGTGTTCGACGGGGTCTACTTCCGCGAGCTGCAGCAGCGGCGGGGCCTGCTGACCTCCGACCAGACGCTGTTCGAGTCGCCGGAGACGAAGCGGCTGGTGAACATGTTCGCCATGAACCAGGCATACTTCTTCTACGCGTTCCAGCAGGGGATGCTCAAGATGGGGCAGCTCGACCTCAAGGAGGGCGACGCCGGCGAGGTCAGGACATCTTGCAGGGTCGTCAACTGACACT-CCTTGATCATACCAACAATCTATATGTCCTGAATTGCCCGCCTTAGCTCTTTAGCTTAAGCTTTTGAGTTTAACTGGTTGGTGCATGCAACTCAATAATAACATACCGTATACTCGACGTCTTTCGTGGCCGCGTCTTTGTGAACTTAAAATTGCAGCTAGCTAGTTTGCCGGAAATGCTACAGTACCCAAGGTATACAAGTAGTGTCAGTTTGTATTGTGGCATGGAGGCCATGTATGATAGTAGTAAGTATAGTAAGCTTGCCAGAAATGCTACAGTTAGCAGCTGGTATAATTGTGGTACTGTATAGGAAAGATTGTAAAACAATCATGCATGTCACTAGTTTAGATATGTATGCATGTACAATAATATT]

[+] EMBL AK069503             [TCACACACACTCTCATCTTCTTCATCGCAAGCTAGTAAGAGTGAATCGAAGATGATGAAGAAGCTGGTGAGGTTGCTGATCATGGTGGAGGTGGTGGCCATGGCGGCGGCGCCGCGGCGAGCGGCGGCGCTGAGCATGGACTACTACGGGATGAGCTGCCCGTTCGCGGAGATGGTGGTGAGGAGCGTGGTGAGCCAGGCGCTGATGGGCGACCCGTCGCTCGCCGCCAGCCTCCTCCGCCTCCACTTCCATGACTGCTTCGTCCAGGGCTGCGACGCCTCCGTCCTCCTCGACTCCACCCCGGACAACACCGCCGAGAAGGACGCGCTCGCCAACAAGAGCCTCCGCGGCTTCGAGGTCATCGACCGCATCAAGGACGCCCTCGAGTCGCGGTGCCCCGGCGTCGTCTCCTGCGCCGACGTCCTCGCCCTCGCCGCGCGCGACGCCGTCATCATGGCGGGGGGCCCGTACTACGGCGTGGCGACGGGGAGGAGGGACGGGACGCGGTCTAGCGCGGCCGACACGGTGGCGCTGCCGCCGCCGTTCTTGAACGCGACGGCGCTGATCCAGCTGTTCGGGACGCACGGGTTCACCGCGCAGGACATGGTGGCGCTGTCGGGGGGGCACACGCTGGGGCGGGCGCACTGCGCCGACTTCAAGAACCGGGTGGCGACGGAGGCGGCGACGCTGGACGCGGCGCTGGCGTCGTCGCTGGGCAGCACGTGCGCCGCCGGCGGGGACGCCGCGACGGCGACGTTCGACCGGACGAGCAACGTGTTCGACGGGGTCTACTTCCGCGAGCTGCAGCAGCGGCGGGGCCTGCTGACCTCCGACCAGACGCTGTTCGAGTCGCCGGAGACGAAGCGGCTGGTGAACATGTTCGCCATGAACCAGGCATACTTCTTCTACGCGTTCCAGCAGGGGATGCTCAAGATGGGGCAGCTCGACCTCAAGGAGGGCGACGCCGGCGAGGTCAGGACATCTTGCAGGGTCGTCAACTGACACT CCTTGATCATACCAACAATCTATATGTCCTGAATTGCCCGCCTTAGCTCTTTAGCTTAAGCTTTTGAGTTTAACTGGTTGGTGCATGCAACTCAATAATAACATACCGTATACTCGACGTCTTTCGTGGCCGCGTCTTTGTGAACTTAAAATTGCAGCTAGCTAGTTTGCCGGAAATGCTACAGTACCCAAGGTATACAAGTAGTGTCAGTTTGTATTGTGGCATGGAGGCCATGTATGATAGTAGTAAGTATAGTAAGCTTGCCAGAAATGCTACAGTTAGCAGCTGGTATAATTGTGGTACTGTATAGGAAAGATTGTAAAACAATCATGCATGTCACTAGTTTAGATATGTATGCATGTACAATAATATT]
[+] EMBL CA755599             [              ATCTTCTTCATCGCAAGCTAGTAAGAGTGAATCGAAGATGATGAAGAAGCTGGTGAGGTTGCTGATCATGGTGGAGGTGGTGGCCATGGCGGCGGCGCCGCGGCGAGCGGCGGCGCTGAGCATGGACTACTACGGGATGAGCTGCCCGTTCGCGGAGATGGTGGTGAGGAGCGTGGTGAGCCAGGCGCTGATGGGCGACCCGTCGCTCGCCGCCAGCCTCCTCCGCCTCCACTTCCATGACTGCTTCGTCCAGGGCTGCGACGCCTCCGTCCTCCTCGACTCCACCCCGGACAACACCGCCGAGAAGGACGCGCTCGCCAACAAGAGCCTCCGCGGCTTCGAGGTCATCGACCGCATCAAGGACGCCCTCGAGTCGCGGTGCCCCGGCGTCGTCTCCTGCGCCGACGTCCTCGCCCTCGCCGCGCGCGACGCCGTCATCATGGCGGGGGGCCCGTACTACGGCGTGNCGACGGGGAGGAGGGACGGGACGCGGTCTAGCGCGGCCGACACGNTGGCGCTGCCGCCGCCGTTCTTTGACGCGACGGCGCTGATCCAGCTGTTCGGNACGCACGGGTTCACCGCGCANGACATGGTGGCGCTGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB663442             [                      CATCGCAAGCTAGTAAGAGTGAATCGAAGATGATGAAGAAGCTGGTGAGGTTGCTGATCATGGTGGAGGTGGTGGCCATGGCGGCGGCGCCGCGGCGAGCGGCGGCGCTGAGCATGGACTACTACGGGATGAGCTGCCCGTTCGCGGAGATGGTGGTGAGGAGCGTGGTGAGCCAGGCGCTGATGGGCGACCCGTCGCTCGCCGCCAGCCTCCTCCGCCTCCACTTCCATGACTGCTTCGTCCAGGGCTGCGACGCCTCCGTCCTCCTCGACTCCACCCCGGACAACACCGCCGAGAAGGACGCGCTCGCCAACAAGAGCCTCCGCGGCTTCGAGGTCATCGACCGCATCAAGGACGCCCTCGAGTCGCGGTGCCCCGGCGTCGTCTCCTGCGCCGACGTCCTCGCCCTCGCCGCGCGCGACGCCGTCATCATGGCGGGGGGCCCGTACTACGGCGTGGCGACGGGGAGGAGGGACGGGACGCGGTCTAGCGCGGCCGACACGGTGGCGCTGCCGCCGCCGTTCTTGAACGCGACGGCGCTGATCCAGCTGTTCGGGACGCACGGGTTCACCGCGCAGGACATGGTGGCGCTGTCGGGGGGGCACACGCTGGGGCGGGCGCACTGCGCCAACTTCAAGAACCGGGTGGCGACGGAGGCGGCGACGCTGGACGCGGCGCTGGCGTCGTCGCTGGGCAGCACGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB238433             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GACGAAGCGGCTGGTGAACATGTTCGCCATGAACCAGGCATACTTCTTCTACGCGCTCCAGCAGGGGATGCTCAAGATGGGGCAGCTCGACCTCAAGGAGGGCGACGCCGGCGAGGTCAGGACATCTTGCAGGGTCGTCAACTGACACTCCCTTGATCATACCAACAATCTATATGTCCTGAATTGCCCGCCTTAGCTCTTTAGCTTAAGCTTTTGAGTTTAACTGGTTGGTGCATGCAACTCAATAATAACATACC                                                                                                                                                                                                                                                                          ]


>consensus_7234#0 TCACACACACTCTCATCTTCTTCATCGCAAGCTAGTAAGAGTGAATCGAAGATGATGAAG AAGCTGGTGAGGTTGCTGATCATGGTGGAGGTGGTGGCCATGGCGGCGGCGCCGCGGCGA GCGGCGGCGCTGAGCATGGACTACTACGGGATGAGCTGCCCGTTCGCGGAGATGGTGGTG AGGAGCGTGGTGAGCCAGGCGCTGATGGGCGACCCGTCGCTCGCCGCCAGCCTCCTCCGC CTCCACTTCCATGACTGCTTCGTCCAGGGCTGCGACGCCTCCGTCCTCCTCGACTCCACC CCGGACAACACCGCCGAGAAGGACGCGCTCGCCAACAAGAGCCTCCGCGGCTTCGAGGTC ATCGACCGCATCAAGGACGCCCTCGAGTCGCGGTGCCCCGGCGTCGTCTCCTGCGCCGAC GTCCTCGCCCTCGCCGCGCGCGACGCCGTCATCATGGCGGGGGGCCCGTACTACGGCGTG GCGACGGGGAGGAGGGACGGGACGCGGTCTAGCGCGGCCGACACGGTGGCGCTGCCGCCG CCGTTCTTGAACGCGACGGCGCTGATCCAGCTGTTCGGGACGCACGGGTTCACCGCGCAG GACATGGTGGCGCTGTCGGGGGGGCACACGCTGGGGCGGGCGCACTGCGCCGACTTCAAG AACCGGGTGGCGACGGAGGCGGCGACGCTGGACGCGGCGCTGGCGTCGTCGCTGGGCAGC ACGTGCGCCGCCGGCGGGGACGCCGCGACGGCGACGTTCGACCGGACGAGCAACGTGTTC GACGGGGTCTACTTCCGCGAGCTGCAGCAGCGGCGGGGCCTGCTGACCTCCGACCAGACG CTGTTCGAGTCGCCGGAGACGAAGCGGCTGGTGAACATGTTCGCCATGAACCAGGCATAC TTCTTCTACGCGTTCCAGCAGGGGATGCTCAAGATGGGGCAGCTCGACCTCAAGGAGGGC GACGCCGGCGAGGTCAGGACATCTTGCAGGGTCGTCAACTGACACTCCTTGATCATACCA ACAATCTATATGTCCTGAATTGCCCGCCTTAGCTCTTTAGCTTAAGCTTTTGAGTTTAAC TGGTTGGTGCATGCAACTCAATAATAACATACCGTATACTCGACGTCTTTCGTGGCCGCG TCTTTGTGAACTTAAAATTGCAGCTAGCTAGTTTGCCGGAAATGCTACAGTACCCAAGGT ATACAAGTAGTGTCAGTTTGTATTGTGGCATGGAGGCCATGTATGATAGTAGTAAGTATA GTAAGCTTGCCAGAAATGCTACAGTTAGCAGCTGGTATAATTGTGGTACTGTATAGGAAA GATTGTAAAACAATCATGCATGTCACTAGTTTAGATATGTATGCATGTACAATAATATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)