These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1394 fasta sequence [CTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATCGCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCCCTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGACGGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGTNTGGAGATGGCTACAGCGTGCATGGCCAGAAGG-GCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCGCAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTGGGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATCCATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACGGCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGCAACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACCGTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGGTGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCAGCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGAGCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGACGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGATTCCAAGCACGGTACTACGAAAATGACCATATACTACTACTACTTGCTGGGTTTTGGCAATAAGTCCTGACAGCAAGAAAGAAGCCTTGTGCATATGATGAAAAGCGTCAACAAAGCCACTCCTCTCCCGATCAGAGCTTGCAGGTTGAGATCAAGTTGGAGGGCAGCATTACCATATTCTTCGTCTTGCACATCATCTTGTCGGAGACCATGTTCTTC-ACCGCACTCTTCATCTTCTTGTAGTGCTAGGTTCAGATCTATGTTCATTGTGGCCTCGTGTATTTGTTGGGTTGTGGATGGATGGTGTTGAGTTCTCTCTTGATGGATGTTGTGGATGGAGGAGAGTGTTTTGATGCTTAAGTGTGCTAGCGCTAGTGATTTTTGAGCTTGGTTTTGATTTATGTAAGCAGGCAAGCCATGTGATTTGGCACGCCTTCAGCTGTAATATTTGGCGCTTAGCGGTTCAAATTTTGTTTTGTCTATCGCTTGTGATTATTGAGTAGATTTTTAATGTGTTCAAAAA] [+] EMBL C93588 [CTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATCGCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCCCTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGACGGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGTNTGGAGATGGCTACAGCGTGCATGGCCAGAAGG GCACACTCAAGCGGA ] [+] EMBL AK105361 [ TCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATCGCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCCCTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGACGGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGGTTGGAGATGGCTACAGCGTGCATGGCCAGAAGGCGCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCGCAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTGGGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATCCATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACGGCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGCAACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACCGTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGGTGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCAGCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGAGCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGACGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGATTCCAAGCACGGTACTACGAAAATGACCATATACTACTACTACTTGCTGGGTTTTGGCAATAAGTCCTGACAGCAAGAAAGAAGCCTTGTGCATATGATGAAAAGCGTCAACAAAGCCACTCCTCTCCCGATCAGAGCTTGCAGGTTGAGATCAAGTTGGAGGGCAGCATTACCATATTCTTCGTCTTGCACATCATCTTGTCGGAGACCATGTTCTTC ACCGCACTCTTCATCTTCTTGTAGTGCTAGGTTCAGATCTATGTTCATTGTGGCCTCGTGTATTTGTTGGGTTGTGGATGGATGGTGTTGAGTTCTCTCTTGATGGATGTTGTGGATGGAGGAGAGTGTTTTGATGCTTAAGTGTGCTAGCGCTAGTGATTTTTGAGCTTGGTTTTGATTTATGTAAGCAGGCAAGCCATGTGATTTGGCACGCCTTCAGCTGTAATATTTGGCGCTTAGCGGTTCAAATTTTGTTTTGTCTATCGCTTGTG ] [+] EMBL AU093758 [ GAACAAGTTGNAGGGCANCATTACCATATTCTTCGTCTTGCACATAATCTTGTCGGAGACCATGTTCTTCAACCGCACTCATCATCTTCTTGTAGTGCTAGGTTCAGATCTATGTTCATTGTGGCCTCGTGTATTTGTTGGGTTGTGGATGGATGGTGTTGAGTTCTCTCTTGATGGATGTTGTGGATGGAGGAGAGTGTTTTGATGCTTAAGTGT NTAGCGCTAGTGATTTTTGAGCTTGGTTTTGATTTATGTAAGCAGGCAAGCCATGTGATTTGGCACGCCTTCAGCTGTAATATTTGGCGCTTAGCGGTTCAAATTTTGTTTTGTCTATCGCTTGTGATTATTGAGTAGATTTTTAATGTGTTCAAAAA] consensusID : consensus_7235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1186 fasta sequence [ATCTCTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATCGCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCCCTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGACGGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGGTTGGAGATGGCTACAGCGTGCATGGCCAGAAGGCGCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCGCAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTGGGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATCCATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACGGCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGCAACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACCGTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGGTGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCAGCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGAGCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGACGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGGTATGTTGAGGCTTTTACTCCCAGCCTACTTCACCATACGTCACTAAGGATATGCATTGTCGGAGTAGTAGTACTACCAGTACAAGTATTAGTAGCAGTAGTATTAGTATTGAGTAGGAGTAGTATTTGTAGCAATGTTAGGTGACTAATTAGGAGATCATGGCTAAAAATATGGAATGCTCTTTTGGCTGAACTACTATGATGTGGATGGATGGTCTGAACATGTAACAAATGAAAATGGAGTAGCATATGTGCCCTTCTCTCTCTGTAAGCATGGGATGATTGATCAATTTGTTTAATTAATTAAGACC] [+] EMBL AK069861 [ATCTCTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATCGCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCCCTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGACGGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGGTTGGAGATGGCTACAGCGTGCATGGCCAGAAGGCGCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCGCAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTGGGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATCCATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACGGCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGCAACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACCGTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGGTGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCAGCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGAGCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGACGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGGTATGTTGAGGCTTTTACTCCCAGCCTACTTCACCATACGTCACTAAGGATATGCATTGTCGGAGTAGTAGTACTACCAGTACAAGTATTAGTAGCAGTAGTATTAGTATTGAGTAGGAGTAGTATTTGTAGCAATGTTAGGTGACTAATTAGGAGATCATGGCTAAAAATATGGAATGCTCTTTTGGCTGAACTACTATGATGTGGATGGATGGTCTGAACATGTAACAAATGAAAATGGAGTAGCATATGTGCCCTTCTCTCTCTGTAAGCATGGGATGATTGATCAATTTGTTTAATTAATTAAGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7235#0 ----CTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATC 56 consensus_7235#1 ATCTCTCCCCCCATCGCCCATCGCCAACTCCTGATCCAATCCCTCCTCTCGGCACCCATC 60 ******************************************************** consensus_7235#0 GCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCC 116 consensus_7235#1 GCCCCCATCCCCAATCCCCGACCATCCTCTCACTAGATCCCAATCCCTCCTCTGTCGCCC 120 ************************************************************ consensus_7235#0 CTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGAC 176 consensus_7235#1 CTATCCCCAATCCCTCCTCTAGCTGCGGTTCTTCGATTCGGCAGTCGGAGATGGCACGAC 180 ************************************************************ consensus_7235#0 GGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGTNTGGAGATGGCTACAG 236 consensus_7235#1 GGTCGAAGATGGCGAGGTGGCGGTCGGAGATGGCGCGGCGGCGGTTGGAGATGGCTACAG 240 ******************************************* *************** consensus_7235#0 CGTGCATGGCCAGAAGG-GCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCG 295 consensus_7235#1 CGTGCATGGCCAGAAGGCGCACACTCAAGCGGAGGGTGGCGGAAGCGGCGGCGAAAGCCG 300 ***************** ****************************************** consensus_7235#0 CAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTG 355 consensus_7235#1 CAGCGTAAGTGGAGTCTACAGAGGACCACGTTCAGCGACAAGTAGAATACTGGAGGCGTG 360 ************************************************************ consensus_7235#0 GGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATC 415 consensus_7235#1 GGTTTTGGGTGTCTCTCAAAGGCAAGAACAAGGATGAAAGTAGTGTGGACTCACCACATC 420 ************************************************************ consensus_7235#0 CATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACG 475 consensus_7235#1 CATGTGGTGGAAGGTGACGAGGAGGCGGGTGGCATGGTGGTGGTGTGGTTGGCGCCGACG 480 ************************************************************ consensus_7235#0 GCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGC 535 consensus_7235#1 GCATCTACTTCACCACCGAGTTGGAGCAACAAGATGGTAGTGACGTCTCCGATGTGGAGC 540 ************************************************************ consensus_7235#0 AACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACC 595 consensus_7235#1 AACATCCCGACGGCGGCGCCCCTCCCGACTCCGAGTTACAAGTGGGTGGTGGAGGGCACC 600 ************************************************************ consensus_7235#0 GTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGG 655 consensus_7235#1 GTGTGGAGCGGTGCTCGGCACTAAGGACATCTACTTCGTCCCCAAGTCAGAGCTGCAAGG 660 ************************************************************ consensus_7235#0 TGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCA 715 consensus_7235#1 TGGTAGCGATGTCCCTGACTTCGAAGAGCAAGTGGGTGCTGGGGTGCCTAACGGAGAGCA 720 ************************************************************ consensus_7235#0 GCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGA 775 consensus_7235#1 GCAGCTGAACAACGGCCTCTTCACCGACTTGGACGATCAACAGATGGATGACGTTGAAGA 780 ************************************************************ consensus_7235#0 GCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGA 835 consensus_7235#1 GCCGATTGATGTAGAGGAGATGGCCATCCTAGGAGATGATGATGACACAGTGGCTGGCGA 840 ************************************************************ consensus_7235#0 CGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGATTCCAAGCACGGTACTACGAAAAT 895 consensus_7235#1 CGAGGGCATCGACGAATTTGCTGAAATTCGTGAAGGT----------ATGTTGAGG---- 886 *********************************** * * * * consensus_7235#0 GACCATATACTACTACTACTTGCTGGGTTTTGGCAATAAGTCCTGACAGCAAGAAAGAAG 955 consensus_7235#1 ---------CTTTTACTCCCAGCCTACTTC--ACCATACGTC------ACTAAGGATATG 929 ** **** * ** ** * *** *** * * * * * consensus_7235#0 CCTTGTGCATATGATGAAAAGCGTCAACAAAGCCACTCCTCTCCCGATCAGAGCTTGCAG 1015 consensus_7235#1 CATTGTCGGAGTAGT----AGTACTACCAGTACAAGTATT------AGTAGCAGTAGTA- 978 * **** * * ** * ** * * * * * ** * * * consensus_7235#0 GTTGAGATCAAGTTGGAGGGCAGCATTACCATATTCTTCGTCTTGCACATCATCTTGTCG 1075 consensus_7235#1 -TTAGTATTGAGTAGGA--GTAGTATTTGTAGCAATGTTAGGTGACTAATTA-------G 1028 ** ** *** *** * ** *** * * * * ** * * consensus_7235#0 GAGACCATGTTCTTCACCGCACTCTTCATCTTCTTGTAGTGCTAGGTTCAGATCTATGTT 1135 consensus_7235#1 GAGATCATGGCTAAAAATATGGAATGC-TCTTTTGGCTGAACTA--CTATGATGTGGATG 1085 **** **** * * * **** * * * *** * *** * * consensus_7235#0 CATTGTGGCCTCGTGTATTTGTTGGGTTGTGGATGGATGGTGTTGAGTTCTCTCTTGATG 1195 consensus_7235#1 GATGGTCTGAACATGTAACAAATGAAAATGGAGTAGCATATGTGCCCTTCTCTCTCTGTA 1145 ** ** * **** ** * * * *** ******** * consensus_7235#0 GATGTTGTG-GATGGAGGAGAGTGTTTTGATGCTTAAGTGTGCTAGCGCTAGTGATTTTT 1254 consensus_7235#1 AGCATGGGATGATTGATCAATTTGTTTAATTAATTAAGACC------------------- 1186 * * *** ** * ***** * ***** consensus_7235#0 GAGCTTGGTTTTGATTTATGTAAGCAGGCAAGCCATGTGATTTGGCACGCCTTCAGCTGT 1314 consensus_7235#1 ------------------------------------------------------------ consensus_7235#0 AATATTTGGCGCTTAGCGGTTCAAATTTTGTTTTGTCTATCGCTTGTGATTATTGAGTAG 1374 consensus_7235#1 ------------------------------------------------------------ consensus_7235#0 ATTTTTAATGTGTTCAAAAA 1394 consensus_7235#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||