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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1351 fasta sequence
[GCTTTTGGTGGCACCGACTCGCACAACCACACAAGATTACAAGGAGAGTGGCACATGAAACTGCCGGCAGCTGTCCAATGTATCTTGGATTCTGCTGCCACAATTTTCTGTGCTATCTTCATGGCGTCTCCAGCTCAAAGTACTAACAATTTCTTTGTACTTTGGACTATTTTAGTATTGTACTGGAAGAGGTACGCGACAGCATCGTGTTCATCCTGGGCAAGGCACCCGTGAATCTTGTCTTGGATTTTTTTAAAACAAAACAGCCTGCAGGGGTCGTCTCCCATATTCTCACCACCTTCTTGTTCCTGGAGAACCTCCTCTCCAGCTCTGTCCAAGCATCAATTCTCTTTCTTTTGCTTCCTGCTGATACCTTTGATCCTGAGCAGAAGAAGCTGCAGAAGTGGGTTAAGGCAGGAAGAGCCATGAACAACGAATTTGATTACCTGTTCAAGCTGCTCCTCATCGGCGACTCCTCGGTCGGCAAGTCATGCTTCCTCCTCCGATTCGCGGACGACTCCTACGTCGACAGCTACATCAGCACGATCGGTGTTGACTTCAAGATTCGCACGATCGAGATGGACGGGAAGACCATCAAGCTGCAGATCTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTACTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAACAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCTTCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTC-GAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAAGCAAAAATCTGGGAGCCAGGCAGCCCTGGAGAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAACAGCCACAGAAGAGCAGCTGTTGTTCATCGTGATGGCACAATGGTCTGGCATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCATAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAGAACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCATATTTAATAGATACATGTAGTTTCCAGTCTGAAAGGTCAATTTACACATGCAAAATAATGCACAGATGCAAATGCATATATTTTTTCCCTAAAAAAAAG]
[+] EMBL AK060839 [GCTTTTGGTGGCACCGACTCGCACAACCACACAAGATTACAAGGAGAGTGGCACATGAAACTGCCGGCAGCTGTCCAATGTATCTTGGATTCTGCTGCCACAATTTTCTGTGCTATCTTCATGGCGTCTCCAGCTCAAAGTACTAACAATTTCTTTGTACTTTGGACTATTTTAGTATTGTACTGGAAGAGGTACGCGACAGCATCGTGTTCATCCTGGGCAAGGCACCCGTGAATCTTGTCTTGGATTTTTTTAAAACAAAACAGCCTGCAGGGGTCGTCTCCCATATTCTCACCACCTTCTTGTTCCTGGAGAACCTCCTCTCCAGCTCTGTCCAAGCATCAATTCTCTTTCTTTTGCTTCCTGCTGATACCTTTGATCCTGAGCAGAAGAAGCTGCAGAAGTGGGTTAAGGCAGGAAGAGCCATGAACAACGAATTTGATTACCTGTTCAAGCTGCTCCTCATCGGCGACTCCTCGGTCGGCAAGTCATGCTTCCTCCTCCGATTCGCGGACGACTCCTACGTCGACAGCTACATCAGCACGATCGGTGTTGACTTCAAGATTCGCACGATCGAGATGGACGGGAAGACCATCAAGCTGCAGATCTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTACTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAACAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCTTCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTC GAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAAGCAAAAATCTGGGAGCCAGGCAGCCCTGGAGAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAACAGCCACAGAAGAGCAGCTGTTGTTCATCGTGATGGCACAATGGTCTGGCATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCATAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAGAACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCATATTTAATAGATACATGTAGTTTCCAGTCTGAAAGGTCAATTTACACATGCAAAATAATGCACAGATGCAAATGCATATA ]
[-] EMBL CF334572 [ GTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTCNGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAGGCAAAAATCTGGGAGCCAGGCAGCCCTGGAGAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAGCAGCCACAGAAGAGCAGCTGTTGTTCATCGTGATGGCACAATGGTCTGGCATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCATAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAGAACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCATATTTAATAGATACATGTAGTTTCCAGTCTGAAAGGTCAATTTACACATGCAAAATAATGCACAGATGCAAATGCATATATTTTTTCCCTAAAAAAAAG]
consensusID : consensus_7239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 782 fasta sequence
[CGGATATACGAGACGACGGACGTGTCGACGTCGCCGCCGGCGATGGCCAGCTCCTCGCCCGTACCGCCGCCGCGTTTTTTCCCGGGCTCCGGCGACGTCGGGCGGAGTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTACTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAACAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCTTCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTCGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAGGCAAAAATCTGGGAGCCAGGCAGCCCTGGAAAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAGCAGCCACAGAAGAAGCAGCTGTTGTTCATTCGTGATGGCACAATGGGTCTGGCATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCATAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAGAACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCATATTTAATAGATACATGTAGTTTCCAGT]
[+] EMBL CF334571 [CGGATATACGAGACGACGGACGTGTCGACGTCGCCGCCGGCGATGGCCAGCTCCTCGCCCGTACCGCCGCCGCGTTTTTTCCCGGGCTCCGGCGACGTCGGGCGGAGTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTACTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAACAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCTTCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTCGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAGGCAAAAATCTGGGAGCCAGGCAGCCCTGGAAAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAGCAGCCACAGAAGAAGCAGCTGTTGTTCATTCGTGATGGCACAATGGGTCTGGCATCTTCCATGAATTG ]
[+] EMBL AK099486 [ CGACGGACGTGTCGACGTCGCCGCCGGCGATGGCCAGCTCCTCGCCCGTACCGCCGCCGCGTTTTTTCCCGGGCTCCGGCGACGTCGGGCGGAGTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTACTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAACAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCTTCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACAGGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAATGTCGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAAGCAAAAATCTGGGAGCCAGGCAGCCCTGGAGAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCAACAGCAGCAGCCACAGAAG AGCAGCTGTTGTTCA TCGTGATGGCACAAT GGTCTGGCATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCATAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAGAACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCATATTTAATAGATACATGTAGTTTCCAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7239#0 GCTTTTGGTGGCACCGACTCGCACAACCACACAAGATTACAAGGAGAGTGGCACATGAAA 60
consensus_7239#1 ------------------------------------------------------------
consensus_7239#0 CTGCCGGCAGCTGTCCAATGTATCTTGGATTCTGCTGCCACAATTTTCTGTGCTATCTTC 120
consensus_7239#1 ------------------------------------------------------------
consensus_7239#0 ATGGCGTCTCCAGCTCAAAGTACTAACAATTTCTTTGTACTTTGGACTATTTTAGTATTG 180
consensus_7239#1 ------------------------------------------------------------
consensus_7239#0 TACTGGAAGAGGTACGCGACAGCATCGTGTTCATCCTGGGCAAGGCACCCGTGAATCTTG 240
consensus_7239#1 ------------------------------------------------------------
consensus_7239#0 TCTTGGATTTTTTTAAAACAAAACAGCCTGCAGGGGTCGTCTCCCATATTCTCACCACCT 300
consensus_7239#1 ------------------------------------------------------------
consensus_7239#0 TCTTGTTCCTGGAGAACCTCCTCTCCAGCTCTGTCCAAGCATCAATTCTCTTTCTTTTGC 360
consensus_7239#1 ------------------------------------------------------------
consensus_7239#0 TTCCTGCTGATACCTTTGATCCTGAGCAGAAGAAGCTGCAGAAGTGGGTTAAGGCAGGAA 420
consensus_7239#1 ------------------------------------------------------------
consensus_7239#0 GAGCCATGAACAACGAATTTGATTACCTGTTCAAGCTGCTCCTCATCGGCGACTCCTCGG 480
consensus_7239#1 ------------------------------------------------------------
consensus_7239#0 TCGGCAAGTCATGCTTCCTCCTCCGATTCGCG-GACGACTCCTACGTCGACAGCTACATC 539
consensus_7239#1 ----------------------CGGATATACGAGACGACGGACGTGTCGACGTCGCCGCC 38
* *** ** ****** ****** * * *
consensus_7239#0 AGC-ACGATCGGTG--TTGACTTCAAGATTCGCACGATCGAGAT-GGACGGGAAGACCAT 595
consensus_7239#1 GGCGATGGCCAGCTCCTCGCCCGTACCGCCGCCGCGTTTTTTCCCGGGCTCCGGCGACGT 98
** * * * * * * * * * ** * ** * * *
consensus_7239#0 CAAGCTGCAGATCTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTA 655
consensus_7239#1 CGGGC----GGAGTGGGACACAGCAGGACAGGAGCGATTCAGAACCATCACCAGTAGCTA 154
* ** * ***********************************************
consensus_7239#0 CTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAA 715
consensus_7239#1 CTACCGGGGAGCTCATGGGATAATTATCGTCTATGACATTACGGATATGGAGAGCTTCAA 214
************************************************************
consensus_7239#0 CAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCT 775
consensus_7239#1 CAATGTGAAGGAGTGGATGAGCGAGATCGACAAGTACGCCAATGACAGCGTATGCAAGCT 274
************************************************************
consensus_7239#0 TCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACA 835
consensus_7239#1 TCTTGTTGGTAACAAGTGTGATCTGGCAGAGAGCAGAGTTGTTGAAACTGCAGTAGCACA 334
************************************************************
consensus_7239#0 GGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAA 895
consensus_7239#1 GGCTTATGCTGATGAGATAGGCATTCCATTCCTTGAAACAAGTGCTAAGGACTCGATCAA 394
************************************************************
consensus_7239#0 TGTCGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAAGCAAAAATCTGGGAGCCA 955
consensus_7239#1 TGTCGAAGAGGCTTTCTTGGCTATGTGTGCCGCAATCAAAAGGCAAAAATCTGGGAGCCA 454
***************************************** ******************
consensus_7239#0 GGCAGCCCTGGAGAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCA 1015
consensus_7239#1 GGCAGCCCTGGAAAGGAAGGCATCCAATCTAGTTCAGATGAAAGGTCAGCCAATTCAGCA 514
************ ***********************************************
consensus_7239#0 ACAGCAACAGCCACAGAAGA-GCAGCTGTTGTTCAT-CGTGATGGCACAATGG-TCTGGC 1072
consensus_7239#1 ACAGCAGCAGCCACAGAAGAAGCAGCTGTTGTTCATTCGTGATGGCACAATGGGTCTGGC 574
****** ************* *************** **************** ******
consensus_7239#0 ATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCA 1132
consensus_7239#1 ATCTTCCATGAATTGGGATGAACATGGCATATCTGTTAAGTGTGTTCCTCTGTCTTCTCA 634
************************************************************
consensus_7239#0 TAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAG 1192
consensus_7239#1 TAGATTTGAGCACTTTAGTTACTGCAAGGTGTCGCCACATCTGTTGAAAATCGAGTCAAG 694
************************************************************
consensus_7239#0 AACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCA 1252
consensus_7239#1 AACCTAATTTCCTGTCTTTGATGATTCTCTAATAAACATTGCATCTAGAAAGTTGTACCA 754
************************************************************
consensus_7239#0 TATTTAATAGATACATGTAGTTTCCAGTCTGAAAGGTCAATTTACACATGCAAAATAATG 1312
consensus_7239#1 TATTTAATAGATACATGTAGTTTCCAGT-------------------------------- 782
****************************
consensus_7239#0 CACAGATGCAAATGCATATATTTTTTCCCTAAAAAAAAG 1351
consensus_7239#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||