|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1332 fasta sequence
[CTGCTTCGAATTCCTCACCTCACCTCACCTCCAGGCGGCGGCGAAACCACCAGCCGCTTCGCTTCGCCTCGATTCCAACCCTAGCCCTACCCCTATCCGAATCCCATGCAGACGGAGGCGCGGGTCGGGGTCGTCGTCGACGGCGGCCGCGCCGCCATGGGCCGCCGCCACATCGGCACCGTCGCCCACCTCGCCGCCGGGGGCTTCGCCGGCGCCGTCAGCAAGACCTGCACCGCCCCACTCGCCCGCCTCACCATCCTCTTCCAGGTGGCAGGTATGCATTCAGATGTGGCAGCTCTAAAGAAGTACAGCATATGGCATGAAGCTTCACGAATAGTTCGAGAAGAAGGATTTGGAGCATTTTGGAAAGGCAATCTGGTGACAATTGTGCATCGTTTACCTTATTCTGCCATCAGCTTTTATTCATATGAGCGCTACAAAAAATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCAAATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCTGTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGAAAACAACCAGGTATTACAAAGGCATCTTTCATGCAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTGTACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACTGTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTTGTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTTGATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAATCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTACAGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACCTATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTTTACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGTTACTGTGAGACTGAACTGTATCAGAGTGACTACAGGCCAGACAGTTTTGTAGGTGTTGATAGGATAAAGCTTTACCTGATATGTGTCTTGTGTTGTACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATCCGTGTACACCTCTGAGCATTATGCTCAAATTTTGTGTCGTAAGATGTAACGCCCCTTGCAAGGATGGGAAAAGAAA]
[+] EMBL AK072025 [CTGCTTCGAATTCCTCACCTCACCTCACCTCCAGGCGGCGGCGAAACCACCAGCCGCTTCGCTTCGCCTCGATTCCAACCCTAGCCCTACCCCTATCCGAATCCCATGCAGACGGAGGCGCGGGTCGGGGTCGTCGTCGACGGCGGCCGCGCCGCCATGGGCCGCCGCCACATCGGCACCGTCGCCCACCTCGCCGCCGGGGGCTTCGCCGGCGCCGTCAGCAAGACCTGCACCGCCCCACTCGCCCGCCTCACCATCCTCTTCCAGGTGGCAGGTATGCATTCAGATGTGGCAGCTCTAAAGAAGTACAGCATATGGCATGAAGCTTCACGAATAGTTCGAGAAGAAGGATTTGGAGCATTTTGGAAAGGCAATCTGGTGACAATTGTGCATCGTTTACCTTATTCTGCCATCAGCTTTTATTCATATGAGCGCTACAAAAAATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCAAATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCTGTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGAAAACAACCAGGTATTACAAAGGCATCTTTCATGCAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTGTACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACTGTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTTGTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTTGATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAATCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTACAGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACCTATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTTTACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGTTACTGTGAGACTGAACTGTATCAGAGTGACTACAGGCCAGACAGTTTTGTAGGTGTTGATAGGATAAAGCTTTACCTGATATGTGTCTTGTGTTGTACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATCCGTGTACACCTCTGAGCATTATGCTCAAATTTTGTGTCGTAAGATGTAACGCCCCTTGCAAGGATGGGAAAAGAAA]
[+] EMBL AK107219 [ ACCTCACCTCACCTCCAGGCGGCGGCGAAACCACCAGCCGCTTCGCTTCGCCTCGATTCCAACCCTAGCCCTACCCCTATCCGAATCCCATGCAGACGGAGGCGCGGGTCGGGGTCGTCGTCGACGGCGGCCGCGCCGCCATGGGCCGCCGCCACATCGGCACCGTCGCCCACCTCGCCGCCGGGGGCTTCGCCGGCGCCGTCAGCAAGACCTGCACCGCCCCACTCGCCCGCCTCACCATCCTCTTCCAGGTGGCAGGTATGCATTCAGATGTGGCAGCTCTAAAGAAGTACAGCATATGGCATGAAGCTTCACGAATAGTTCGAGAAGAAGGATTTGGAGCATTTTGGAAAGGCAATCTGGTGACAATTGTGCATCGTTTACCTTATTCTGCCATCAGCTTTTATTCATATGAGCGCTACAAAAAATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCAAATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCTGTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGAAAACAACCAGGTATTACAAAGGCATCTTTCATGCAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTGTACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACTGTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTTGTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTTGATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAATCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTACAGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACCTATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTTTACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGTTACTGTGAGACTGAACTGTATCAGAGTGACTACAGGCCAGACAGTTTTGTAGGTGTTGATAGGATAAAGCTTTACCTGATATGTGTCTTGTGTTGTACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATCCGTGTACACCTCTGAGCATTATGCTCAAATTTTGTGTCGTAAGATGTAACGCCCCTTGCAAGGATGGGAAAAGAAA]
[+] EMBL BI305846 [ gnGCCGCCGCCACATCGGCACCGTCGCCCACCTCGCCGCCGGGGGCTTCGCCGGCGCCGTCAGCAAGACCTGCACCGCCCCACTCGCCCGCCTCACCATCCTCTTCCAGGTGGCAGGTATGCATTCAGATGTGGCAGCTCTAAAGAAGTACAGCATATGGCATGAAGCTTCA ]
consensusID : consensus_7240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 901 fasta sequence
[AATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCAAATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCTGTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTGTACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACTGTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTTGTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTTGATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAATCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTACAGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACCTATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTTTACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGNTACTGTGAGACTGAACTGTATCAGAGTGACTACAGGCCAGACAGNTTTGTANGTGNTGATAGGGATAAAGCCTTACCTGATATGGGNCCTGGGGNTGNACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATTCCGNGTACACCTCTGAACATTATGCTCNAAATTTTGGGNCGNAAGATGTAACGNCCCCTTGCAAGGATGGGGAAAAGAAACTTTTAAGGNAAACGAAATGGGGGNTTACCAAAATTTNTATT]
[+] EMBL CA763859 [AATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCAAATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCTGTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTGTACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACTGTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTTGTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTTGATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAATCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTACAGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACCTATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTTTACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGNTACTGTGAGACTGAACTGTATCAGAGTGACTACAGGCCAGACAGNTTTGTANGTGNTGATAGGGATAAAGCCTTACCTGATATGGGNCCTGGGGNTGNACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATTCCGNGTACACCTCTGAACATTATGCTCNAAATTTTGGGNCGNAAGATGTAACGNCCCCTTGCAAGGATGGGGAAAAGAAACTTTTAAGGNAAACGAAATGGGGGNTTACCAAAATTTNTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7240#0 CTGCTTCGAATTCCTCACCTCACCTCACCTCCAGGCGGCGGCGAAACCACCAGCCGCTTC 60
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 GCTTCGCCTCGATTCCAACCCTAGCCCTACCCCTATCCGAATCCCATGCAGACGGAGGCG 120
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 CGGGTCGGGGTCGTCGTCGACGGCGGCCGCGCCGCCATGGGCCGCCGCCACATCGGCACC 180
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 GTCGCCCACCTCGCCGCCGGGGGCTTCGCCGGCGCCGTCAGCAAGACCTGCACCGCCCCA 240
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 CTCGCCCGCCTCACCATCCTCTTCCAGGTGGCAGGTATGCATTCAGATGTGGCAGCTCTA 300
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 AAGAAGTACAGCATATGGCATGAAGCTTCACGAATAGTTCGAGAAGAAGGATTTGGAGCA 360
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 TTTTGGAAAGGCAATCTGGTGACAATTGTGCATCGTTTACCTTATTCTGCCATCAGCTTT 420
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 TATTCATATGAGCGCTACAAAAAATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCA 480
consensus_7240#1 ----------------------AATTTCTCCAAAGGGTTCCTGGCCTTGATGAAGACTCA 38
**************************************
consensus_7240#0 AATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCT 540
consensus_7240#1 AATTATGTTGGTGTTGCTCGTTTACTTAGTGGCGGTTTGGCAGGAATTACTGCTGCATCT 98
************************************************************
consensus_7240#0 GTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAGAAAACAACCAGGTAT 600
consensus_7240#1 GTAACTTATCCCTTGGATGTTGTCCGTACTCGTTTGGCAACACAG--------------- 143
*********************************************
consensus_7240#0 TACAAAGGCATCTTTCATGCAGTGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTG 660
consensus_7240#1 ----------------------TGTCTACCATTTGTAGAGATGAGGGTGTCAAAGGATTG 181
**************************************
consensus_7240#0 TACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACT 720
consensus_7240#1 TACAAGGGCCTTGGGGCCACATTATTGGGAGTCGGACCTAGCATAGCAATCAGCTTTACT 241
************************************************************
consensus_7240#0 GTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTT 780
consensus_7240#1 GTATATGAATCATTGAGGTCTCATTGGCAAATGGAAAGGCCCCAAGATTCCCCTGCAGTT 301
************************************************************
consensus_7240#0 GTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTT 840
consensus_7240#1 GTTAGTTTGTTTTCTGGGAGTCTATCTGGTATTGCATCATCTACTGCCACATTTCCCCTT 361
************************************************************
consensus_7240#0 GATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAA 900
consensus_7240#1 GATCTTGTAAAGAGACGAATGCAACTGCAAGGGGCAGCTGGGACATCGTCAGTCTGTAAA 421
************************************************************
consensus_7240#0 TCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTAC 960
consensus_7240#1 TCAAGCATAACTGGAACCATCCGCCAAATCTTTCAGAAGGAAGGCCTTCGTGGCTTCTAC 481
************************************************************
consensus_7240#0 AGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACC 1020
consensus_7240#1 AGAGGGATAGTCCCTGAGTACCTGAAGGTTGTTCCTAGTGTAGGGATTGCCTTCATGACC 541
************************************************************
consensus_7240#0 TATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTT 1080
consensus_7240#1 TATGAGACCCTGAAGAGCTTGCTCTCCAGCATAGACGAAGACGACGAGAGCTGAGATCTT 601
************************************************************
consensus_7240#0 TACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGTTACTGTGAGACTGAACT 1140
consensus_7240#1 TACAAAATGGCTACACGCTTCAAAGAGATTTCTGGCAATGAGNTACTGTGAGACTGAACT 661
****************************************** *****************
consensus_7240#0 GTATCAGAGTGACTACAGGCCAGACAGTTTTGTAGGTGTTGATAGG-ATAAAGCTTTACC 1199
consensus_7240#1 GTATCAGAGTGACTACAGGCCAGACAGNTTTGTANGTGNTGATAGGGATAAAGCCTTACC 721
*************************** ****** *** ******* ******* *****
consensus_7240#0 TGATATGTGTCTTGTG-TTGTACCATATAGGTCAAGAAGAGCAAATGAGTATTCCAT-CC 1257
consensus_7240#1 TGATATGGGNCCTGGGGNTGNACCATATAGGTCAAGAAGAGCAAATGAGTATTCCATTCC 781
******* * * ** * ** ************************************ **
consensus_7240#0 GTGTACACCTCTGAGCATTATGCTCAAA-TTTTGTGTCGTAAGATGTAACGCCCC-TTGC 1315
consensus_7240#1 GNGTACACCTCTGAACATTATGCTCNAAATTTTGGGNCGNAAGATGTAACGNCCCCTTGC 841
* ************ ********** ** ***** * ** *********** *** ****
consensus_7240#0 AAGGATGGGAAAAGAAA------------------------------------------- 1332
consensus_7240#1 AAGGATGGGGAAAAGAAACTTTTAAGGNAAACGAAATGGGGGNTTACCAAAATTTNTATT 901
********* *** **
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||