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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1293 fasta sequence
[GCTTTCTCCTCGCAGATGCAATTGCGCGAACACCTCCAAACTCCCGAGTCCCCTCTCCTCTCTCGTCTTCCTCTCCACGACGACCTCTCCGCTTCAATTCTGCGCCGCCGCCTCAGAGCGCCATGGACTTCAGCGGCGACATCGATGACCTGATCTCCCTCCAGCTCCTCCACGATCAGCTGCTCGGGGTCGAGGCCGACGCGTGCCTCCCGGTGGCAGTTCATCACGATGGCGTCGCCGCGTTCGCCGAGCATCAGCAGGGTTTCCATCCCGCGGCGTTCTTGCCGCAGCAGCCGATGACGATGACACCGGCTGGGTACGTGGACATGGCGAATGATCAGTATTTGGGTGCGCATGCCGCCGCTGGCGAGGCGGAGGCGGTCTACCGGGCGGCGGCGGCGGAGCCGGTGATGATACGGTTCGGCGGCGAGGTGTCCCCGGTGTCGGACCCCCGGAGGCCGCCCCTGACGATCTCGCTGCCTCCGACGTCGCACGCGTGGGCGGCGGCGGAGGCGGTGCACCCGGCCGCTCTGCTGCAGGCGCAGGCCGCGGCCGCGGCCGCCGACCCGAACGACTTCCGGAAGTACCGCGGCGTGCGGCAGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCCAAGAAGCGGGGCTCGCGCGTGTGGCTCGGCACGTACGACACGGCCATCGAGGCGGCGCGCGCGTACGACCGCGCCGCCTTCCGCATGCGCGGCGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCTCCCGCGGCGCCGACTTCCTGGCACCGCCGCCGCCGCCCCCGCCGCCGACGACGTCGACCCACGGCAAACGGAAGCGGCACGAGACGGCGGCGGCCGACCCGGACGTCGAGGTGATCGGAGAATCATCCAAATCCGTCAAGACCGAGACGTACACATCGCCGGCGTCGTCGTCGCTGGCCTCAACGACAACCTCAACGGTGACATCATCATCCACGTCGCCTTCCCCCTCGTCGGAGGCAGCTGCCTGCGGCGGCGGCGGCGGCAGCGAGCTGTTCGTCCCACCGATGCCGTCGAGCTGGTCGTGGGATCAGTTGGAGGGGTTCTTCGGCATCCTCTCGCCGCTCTCGCCGCACCCGCAAATGGGATTCCCGGAGGTCGCCGTAAACTAATTAAGCGCGCTAATGATCTCTCTAAGCATGATTAATTAGGCGCAATAATCGGCAATTAATTAGTGGCTTCTAGTTCTCGACGGCCTTCGCTTTGGACACATCTCAGGAGATTTGGCTTGGAGCAGTGTACTAT]
[+] EMBL AY339378 [GCTTTCTCCTCGCAGATGCAATTGCGCGAACACCTCCAAACTCCCGAGTCCCCTCTCCTCTCTCGTCTTCCTCTCCACGACGACCTCTCCGCTTCAATTCTGCGCCGCCGCCTCAGAGCGCCATGGACTTCAGCGGCGACATCGATGACCTGATCTCCCTCCAGCTCCTCCACGATCAGCTGCTCGGGGTCGAGGCCGACGCGTGCCTCCCGGTGGCAGTTCATCACGATGGCGTCGCCGCGTTCGCCGAGCATCAGCAGGGTTTCCATCCCGCGGCGTTCTTGCCGCAGCAGCCGATGACGATGACACCGGCTGGGTACGTGGACATGGCGAATGATCAGTATTTGGGTGCGCATGCCGCCGCTGGCGAGGCGGAGGCGGTCTACCGGGCGGCGGCGGCGGAGCCGGTGATGATACGGTTCGGCGGCGAGGTGTCCCCGGTGTCGGACCCCCGGAGGCCGCCCCTGACGATCTCGCTGCCTCCGACGTCGCACGCGTGGGCGGCGGCGGAGGCGGTGCACCCGGCCGCTCTGCTGCAGGCGCAGGCCGCGGCCGCGGCCGCCGACCCGAACGACTTCCGGAAGTACCGCGGCGTGCGGCAGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCCAAGAAGCGGGGCTCGCGCGTGTGGCTCGGCACGTACGACACGGCCATCGAGGCGGCGCGCGCGTACGACCGCGCCGCCTTCCGCATGCGCGGCGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCTCCCGCGGCGCCGACTTCCTGGCACCGCCGCCGCCGCCCCCGCCGCCGACGACGTCGACCCACGGCAAACGGAAGCGGCACGAGACGGCGGCGGCCGACCCGGACGTCGAGGTGATCGGAGAATCATCCAAATCCGTCAAGACCGAGACGTACACATCGCCGGCGTCGTCGTCGCTGGCCTCAACGACAACCTCAACGGTGACATCATCATCCACGTCGCCTTCCCCCTCGTCGGAGGCAGCTGCCTGCGGCGGCGGCGGCGGCAGCGAGCTGTTCGTCCCACCGATGCCGTCGAGCTGGTCGTGGGATCAGTTGGAGGGGTTCTTCGGCATCCTCTCGCCGCTCTCGCCGCACCCGCAAATGGGATTCCCGGAGGTCGCCGTAAACTAATTAAGCGCGCTAATGATCTCTCTAAGCATGATTAATTAGGCGCAATAATCGGCAATTAATTAGTGGCTTCTAGTTCTCGACGGCCTTCGCTTTGGACACATCTCAGGAGATTTGGCTTGGAGCAGTGTACTAT]
[+] EMBL AA752355 [ ACCCCAAGAAGCGGGGCTCGCGCGTGTGGCTCGGCACGTACGACACGGCCATCGAGGCGGCGCGCGCGTACAACCGCGCCGCCTTCCGCATGCGCGGCGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCTCCCGCGGCGCCGACTTCCTGGCACCGCCGCCGCCGCCCCCGCCGCCGATAACATCTACCCACGGC ]
consensusID : consensus_7243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 849 fasta sequence
[CTTCCGCAAGTACCGCGGCGTGCGACAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCGAAGAGGCGCGGGTCGCGCGTGTGGCTGGGCACGTACGACACCCCCGTGGAGGCCGCGCGCGCGTACGACCGCGCCGCCTTCCGCATGCGCGGTGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCACCCGCGGCGCCGAACTGTGGGCTCCTCCCCCGCCGCCACCCGCGCACTCCGCCGCCGCCTCGACGACGAACAAGCGGAAGCGGCAGCCGTCGGAGGACCCCGACGACGGCGTCGAGGTGATCGGAGTGGTAAGCAAGGCCGTCAAGACCGAGGCGCCGACGTCCAACTCGTCGTCACTGTCGTCGTCCCTGACGTCGCGGGACACGACGCCGGCCACGTCGTCGGCGGGGGCGGAGCACGCCGGCGCGGCCGCCGAGAGTTCGCCGGCGACGCCGTCGAGCTGGAGCTGGGAGCAGTACTGGGAAGCGCTGCTCGGTGGCCTCCCGCCACTGTCGCCTCTGTCGCCGCACCCGGCGTTGGGGTTCCCTCAGCTCACCGTTAACTGAGAAAATTAAACAATGATTAGCTGACGTGGGCACAGAAATAATGCGTTTTTTTCCCGTTGTTAACGACGTCATGTGTACATTGGAACTTTTTTTGGGAGCTTAACAGAAGGGGCGTATAGACAAACATCAGAAAGTGGTAGTCGTGTTTACTTTTTTTTTTCTTTCGAGTTGAGAACCTTGAGATCAATCGATGCTTGTAAAGAATAAGCAGAGGGTGCTGTTTGGCATTTGATATGACAATGTAAACAAATAGTACAAGTTACTTT]
[+] EMBL AK109141 [CTTCCGCAAGTACCGCGGCGTGCGACAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCGAAGAGGCGCGGGTCGCGCGTGTGGCTGGGCACGTACGACACCCCCGTGGAGGCCGCGCGCGCGTACGACCGCGCCGCCTTCCGCATGCGCGGTGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCACCCGCGGCGCCGAACTGTGGGCTCCTCCCCCGCCGCCACCCGCGCACTCCGCCGCCGCCTCGACGACGAACAAGCGGAAGCGGCAGCCGTCGGAGGACCCCGACGACGGCGTCGAGGTGATCGGAGTGGTAAGCAAGGCCGTCAAGACCGAGGCGCCGACGTCCAACTCGTCGTCACTGTCGTCGTCCCTGACGTCGCGGGACACGACGCCGGCCACGTCGTCGGCGGGGGCGGAGCACGCCGGCGCGGCCGCCGAGAGTTCGCCGGCGACGCCGTCGAGCTGGAGCTGGGAGCAGTACTGGGAAGCGCTGCTCGGTGGCCTCCCGCCACTGTCGCCTCTGTCGCCGCACCCGGCGTTGGGGTTCCCTCAGCTCACCGTTAACTGAGAAAATTAAACAATGATTAGCTGACGTGGGCACAGAAATAATGCGTTTTTTTCCCGTTGTTAACGACGTCATGTGTACATTGGAACTTTTTTTGGGAGCTTAACAGAAGGGGCGTATAGACAAACATCAGAAAGTGGTAGTCGTGTTTACTTTTTTTTTTCTTTCGAGTTGAGAACCTTGAGATCAATCGATGCTTGTAAAGAATAAGCAGAGGGTGCTGTTTGGCATTTGATATGACAATGTAAACAAATAGTACAAGTTACTTT]
[+] EMBL AY339379 [CTTCCGCAAGTACCGCGGCGTGCGACAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCGAAGAGGCGCGGGTCGCGCGTGTGGCTGGGCACGTACGACACCCCCGTGGAGGCCGCGCGCGCGTACGACCGCGCCGCCTTCCGCATGCGCGGTGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCACCCGCGGCGCCGAACTGTGGGCTCCTCCCCCGCCGCCACCCGCGCACTCCGCCGCCGCCTCGACGACGAACAAGCGGAAGCGGCAGCCGTCGGAGGACCCCGACGACGGCGTCGAGGTGATCGGAGTGGTAAGCAAGGCCGTCAAGACCGAGGCGCCGACGTCCAACTCGTCGTCACTGTCGTCGTCCCTGACGTCGCGGGACACGACGCCGGCCACGTCGTCGGCGGGGGCGGAGCACGCCGGCGCGGCCGCCGAGAGTTCGCCGGCGACGCCGTCGAGCTGGAGCTGGGAGCAGTACTGGGAAGCGCTGCTCGGTGGCCTCCCGCCACTGTCGCCTCTGTCGCCGCACCCGGCGTTGGGGTTCCCTCAGCTCACCGTTAACTGAGAAAATTAAACAATGATTAGCTGACGTGGGCACAGAAATAATGCGTTTTTTTCCCGTTGTTAACGACGTCATGTGTACATTGGAACTTTTTTTGGGAGCTTAACAGAAGGGGCGTATAGACAAACATCAGAAAGTGGTAGTCGTGTTTACTTTTTTTTTTCTTTaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7243#0 GCTTTCTCCTCGCAGATGCAATTGCGCGAACACCTCCAAACTCCCGAGTCCCCTCTCCTC 60
consensus_7243#1 ------------------------------------------------------------
consensus_7243#0 TCTCGTCTTCCTCTCCACGACGACCTCTCCGCTTCAATTCTGCGCCGCCGCCTCAGAGCG 120
consensus_7243#1 ------------------------------------------------------------
consensus_7243#0 CCATGGACTTCAGCGGCGACATCGATGACCTGATCTCCCTCCAGCTCCTCCACGATCAGC 180
consensus_7243#1 ------------------------------------------------------------
consensus_7243#0 TGCTCGGGGTCGAGGCCGACGCGTGCCTCCCGGTGGCAGTTCATCACGATGGCGTCGCCG 240
consensus_7243#1 ------------------------------------------------------------
consensus_7243#0 CGTTCGCCGAGCATCAGCAGGGTTTCCATCCCGCGGCGTTCTTGCCGCAGCAGCCGATGA 300
consensus_7243#1 ------------------------------------------------------------
consensus_7243#0 CGATGACACCGGCTGGGTACGTGGACATGGCGAATGATCAGTATTTGGGTGCGCATGCCG 360
consensus_7243#1 ------------------------------------------------------------
consensus_7243#0 CCGCTGGCGAGGCGGAGGCGGTCTACCGGGCGGCGGCGGCGGAGCCGGTGATGATACGGT 420
consensus_7243#1 ------------------------------------------------------------
consensus_7243#0 TCGGCGGCGAGGTGTCCCCGGTGTCGGACCCCCGGAGGCCGCCCCTGACGATCTCGCTGC 480
consensus_7243#1 ------------------------------------------------------------
consensus_7243#0 CTCCGACGTCGCACGCGTGGGCGGCGGCGGAGGCGGTGCACCCGGCCGCTCTGCTGCAGG 540
consensus_7243#1 ------------------------------------------------------------
consensus_7243#0 CGCAGGCCGCGGCCGCGGCCGCCGACCCGAACGACTTCCGGAAGTACCGCGGCGTGCGGC 600
consensus_7243#1 ----------------------------------CTTCCGCAAGTACCGCGGCGTGCGAC 26
****** ***************** *
consensus_7243#0 AGCGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCCAAGAAGCGGGGCTCGCGCG 660
consensus_7243#1 AGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCGAAGAGGCGCGGGTCGCGCG 86
************* ************************** **** *** ** *******
consensus_7243#0 TGTGGCTCGGCACGTACGACACGGCCATCGAGGCGGCGCGCGCGTACGACCGCGCCGCCT 720
consensus_7243#1 TGTGGCTGGGCACGTACGACACCCCCGTGGAGGCCGCGCGCGCGTACGACCGCGCCGCCT 146
******* ************** ** * ***** *************************
consensus_7243#0 TCCGCATGCGCGGCGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCTCCCGCGGCG 780
consensus_7243#1 TCCGCATGCGCGGTGCCAAGGCCATCCTCAACTTCCCCAACGAGGTCGGCACCCGCGGCG 206
************* ************************************ *********
consensus_7243#0 CCGACTTCCTGGCACCGCCGCCGCCGCC-CCCGC---CGCCGACGACG--TCGACCCACG 834
consensus_7243#1 CCGAACTGTGGGCTCCTCCCCCGCCGCCACCCGCGCACTCCGCCGCCGCCTCGACGACGA 266
**** * *** ** ** ******** ***** * *** ** ** *****
consensus_7243#0 GCAAACGGAAGCGGCACGAGACGGCGGCGGCCGACCCGGACGTCGAGGTGATCGGAGAAT 894
consensus_7243#1 ACAAGCGGAAGCGGCAGCCGTCGGAGGACCCCGACGACGGCGTCGAGGTGATCGGAGTGG 326
*** *********** * *** ** ***** * *****************
consensus_7243#0 CATCCAAATCCGTCAAGACCGAGACGTACACATCGCCGGCGTCGTCGTCGCTGGCCTCAA 954
consensus_7243#1 TAAGCAAGGCCGTCAAGACCGAGGCGCCGACGTC--CAAC-TCGTCGTCACTGTCGTCGT 383
* *** ************** ** ** ** * * ******** *** * **
consensus_7243#0 CGACAACCTCAACGGTGACATCATCATCCACGTCGCCTTCCCCCTCGTCGGAGGCAGCTG 1014
consensus_7243#1 C-----CC-------TGACGTCGCGGGACACGACGCCGGCCACGTCGTCGGCGGGGGCGG 431
* ** **** ** **** **** ** * ******* ** ** *
consensus_7243#0 CCTGCGGCGGCGGCGGCGGCAGCGAGCTGTTCGTCCCACCGATGCCGTCGAGCTGGTCGT 1074
consensus_7243#1 AGCACGCCGGCG-CGGCCGCCGAGAG---TTCG--CCGGCGACGCCGTCGAGCTGGAGCT 485
** ***** **** ** * *** **** ** *** ************* *
consensus_7243#0 GGGATCAGTT---GGAGGGGTTCTTCGGCATCCTCTCGCCGCTCTCGCC---------GC 1122
consensus_7243#1 GGGAGCAGTACTGGGAAGCGCTGCTCGGTGGCCTCCCGCCACTGTCGCCTCTGTCGCCGC 545
**** **** *** * * * **** **** **** ** ***** **
consensus_7243#0 ACCCGCAAATGGGATTCCCGGAGGTCGCCGTAAACTAATTAAGCGCGCTAATGATCTCTC 1182
consensus_7243#1 ACCCGGCGTTGGGGTTCCCTCAGCTCACCGTTAACTGAGAAAATTAAACAATGATTAGCT 605
***** **** ***** ** ** **** **** * ** ******
consensus_7243#0 TAAGCATGATTAATTA-GGCGCAATAATCGGCAATTAATTAGTGGCTTCTAGTTCTCGAC 1241
consensus_7243#1 GACGTGGGCACAGAAATAATGCGTTTTTTTCCCGTTG-TTAACGACGTCATGTGTACATT 664
* * * * * ** * * * ** *** * * ** ** *
consensus_7243#0 GGCCTTCGCTTTGGACACATCTCAGGAGATTTGGCTTGG--AGCAGTGTACTAT------ 1293
consensus_7243#1 GGAACTTTTTTTGGGAGCTTAACAGAAGGGGCGTATAGACAAACATCAGAAAGTGGTAGT 724
** * ***** * * *** ** * * * * ** * *
consensus_7243#0 ------------------------------------------------------------
consensus_7243#1 CGTGTTTACTTTTTTTTTTCTTTCGAGTTGAGAACCTTGAGATCAATCGATGCTTGTAAA 784
consensus_7243#0 ------------------------------------------------------------
consensus_7243#1 GAATAAGCAGAGGGTGCTGTTTGGCATTTGATATGACAATGTAAACAAATAGTACAAGTT 844
consensus_7243#0 -----
consensus_7243#1 ACTTT 849
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||