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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1100 fasta sequence
[CTCGCCGCCGCCCGCCGCGATGCTACTGGCGCGCGCTCCGCCGCCGCCGGCGATGCCCTCGGCGGTCAGCTCGCCGCCGCAACGGGAGAGCATACTCCGCCCATACTGCGTTCCCTGGACCCGCGGCTCCGTTGCGACGGCCGCCGTGGCGAAGGCTGCTCCTTTCCGGGGCGAGCAAAACCACAAGCAGGTAGCGAGCGTGGCGAACCCCCTGGTGAAGCACTGCGTTAGGCTCAGGCTCTCCTCCGCGTACCGCCGCTCCTGCCGCCGCATTCTCCTCGTCGGACTCATCCCCATCCTGGAGATGTGTAGCTTCGAATTCTCCACCATCGAAACCTTGCTTCTCTTGGACGGCATAGAGCTACCGGAGGAATTGTACGGGTTCTCTGGCAATGTCGTGTATGTCAGCGCCGCTGTGATGAAGAAAGTTTCTGGGATGCAATCAGTTGATTCAACTGAGGCAATCGCTATCATTCACATGCCTAAGTATTTCCGCGACCTTGACAGCGACCAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGATGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAGCTTCCAGTTGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAATCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGATACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTACATTTGAATCTCTT-AATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTATTGTTCTTGTCCAAAAAAAAAAA]
[+] EMBL AK059852 [CTCGCCGCCGCCCGCCGCGATGCTACTGGCGCGCGCTCCGCCGCCGCCGGCGATGCCCTCGGCGGTCAGCTCGCCGCCGCAACGGGAGAGCATACTCCGCCCATACTGCGTTCCCTGGACCCGCGGCTCCGTTGCGACGGCCGCCGTGGCGAAGGCTGCTCCTTTCCGGGGCGAGCAAAACCACAAGCAGGTAGCGAGCGTGGCGAACCCCCTGGTGAAGCACTGCGTTAGGCTCAGGCTCTCCTCCGCGTACCGCCGCTCCTGCCGCCGCATTCTCCTCGTCGGACTCATCCCCATCCTGGAGATGTGTAGCTTCGAATTCTCCACCATCGAAACCTTGCTTCTCTTGGACGGCATAGAGCTACCGGAGGAATTGTACGGGTTCTCTGGCAATGTCGTGTATGTCAGCGCCGCTGTGATGAAGAAAGTTTCTGGGATGCAATCAGTTGATTCAACTGAGGCAATCGCTATCATTCACATGCCTAAGTATTTCCGCGACCTTGACAGCGACCAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGATGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAGCTTCCAGTTGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAATCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGATACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTACATTTGAATCTCTT AATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTATT ]
[-] EMBL CA759215 [ GATGAAGAAAGTTTCTGGGATGCAATCAGTTGATTCAAGTGAGGCAATCGCTATCATTCACATGCCTAAGTATTTCCGCGA CTTGACAGCGACCAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGATGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAGCTTCCAGTTGTTTTTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAACCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGAGACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTACATTTGAATCTCTG AATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTATTGTTCTTGTCCAAAAAAAAAAA]
[+] EMBL AU162348 [ TCAGTTGATTCAACTGAGGCAATCGCTATCATTCACATGCCTAAGTATTTCCGCGACCTTGACAGCGACCAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGATGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAGCTTCCAGTTGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAATCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGATACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTACATTTGAATCTCTTAAATGTTTCAGTTGCAGGTGGNATCTTCNTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCNTGATTT ]
consensusID : consensus_7248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[AGGACGAGACAAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGACGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAACTTCCAGTTGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAACCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGAGACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTCATTTGAATCTCTGAATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTAAAAAAAAAAAAA]
[-] EMBL CA759216 [AGGACGAGACAAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGACGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAACTTCCAGTTGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAACCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGAGACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTCATTTGAATCTCTGAATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7248#0 CTCGCCGCCGCCCGCCGCGATGCTACTGGCGCGCGCTCCGCCGCCGCCGGCGATGCCCTC 60
consensus_7248#1 ------------------------------------------------------------
consensus_7248#0 GGCGGTCAGCTCGCCGCCGCAACGGGAGAGCATACTCCGCCCATACTGCGTTCCCTGGAC 120
consensus_7248#1 ------------------------------------------------------------
consensus_7248#0 CCGCGGCTCCGTTGCGACGGCCGCCGTGGCGAAGGCTGCTCCTTTCCGGGGCGAGCAAAA 180
consensus_7248#1 ------------------------------------------------------------
consensus_7248#0 CCACAAGCAGGTAGCGAGCGTGGCGAACCCCCTGGTGAAGCACTGCGTTAGGCTCAGGCT 240
consensus_7248#1 ------------------------------------------------------------
consensus_7248#0 CTCCTCCGCGTACCGCCGCTCCTGCCGCCGCATTCTCCTCGTCGGACTCATCCCCATCCT 300
consensus_7248#1 ------------------------------------------------------------
consensus_7248#0 GGAGATGTGTAGCTTCGAATTCTCCACCATCGAAACCTTGCTTCTCTTGGACGGCATAGA 360
consensus_7248#1 ------------------------------------------------------------
consensus_7248#0 GCTACCGGAGGAATTGTACGGGTTCTCTGGCAATGTCGTGTATGTCAGCGCCGCTGTGAT 420
consensus_7248#1 ------------------------------------------------------------
consensus_7248#0 GAAGAAAGTTTCTGGGATGCAATCAGTTGATTCAACTGAGGCAATCGCTATCATTCACAT 480
consensus_7248#1 ------------------------------------------------------------
consensus_7248#0 GCCTAAGTATTTCCGCGACCTTGACAGCGACCAGGGTGGAGCTGTTCTTGATGAGTGGCT 540
consensus_7248#1 ---------------------AGGACGAGACAAGGGTGGAGCTGTTCTTGATGAGTGGCT 39
* * *** ****************************
consensus_7248#0 CGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAAC 600
consensus_7248#1 CGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAAC 99
************************************************************
consensus_7248#0 ATTGATAAGATCCGCTTGTGCTTTCAGATGGGATGGGGTATTTCTTCTTCCAGCTTGCTG 660
consensus_7248#1 ATTGATAAGATCCGCTTGTGCTTTCAGACGGGATGGGGTATTTCTTCTTCCAGCTTGCTG 159
**************************** *******************************
consensus_7248#0 TGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAGCTTCCAGT 720
consensus_7248#1 TGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAACTTCCAGT 219
*************************************************** ********
consensus_7248#0 TGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAATCTGATATGAAGATGCT 780
consensus_7248#1 TGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAACCTGATATGAAGATGCT 279
******************************************* ****************
consensus_7248#0 GGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGA 840
consensus_7248#1 GGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGA 339
************************************************************
consensus_7248#0 ACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGG 900
consensus_7248#1 ACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGG 399
************************************************************
consensus_7248#0 CCTTTCGGCAGATACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTACATT 960
consensus_7248#1 CCTTTCGGCAGAGACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGT-CATT 458
************ ****************************************** ****
consensus_7248#0 TGAATCTCTTAATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACA 1020
consensus_7248#1 TGAATCTCTGAATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACA 518
********* **************************************************
consensus_7248#0 GCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTATTG 1080
consensus_7248#1 GCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATAATTTTAA-- 576
*********************************************************
consensus_7248#0 TTCTTGTCCAAAAAAAAAAA 1100
consensus_7248#1 ---------AAAAAAAAAAA 587
***********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||