These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1067 fasta sequence [CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCAGACGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGAGGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGGCAAGCAGGGAAGGACGGTGGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGTATATAAACCTTTGAATTTGAAATAATCTATTCCTTGTTCTCCATGAACCACACTGGTCTTATTAATTAGTTCTTTGATCCTTCCCTTTTAAAGTAAATGTTATAACTGACTTACAATTGCCTATATATAAATGTTGAACCATGAAAGAACTGCCAATGAGTTCGGCTGGTCAGCATGCAACCCGGTTTCGATCCCCAGTGTCCAAGGGGACCCCTCAGTTAAAAAATCATCTAGTTCAAAATAAAAGAAAATGTAGCAAGAATTAGATATTGCAACCATGTGGTTTATGTAGAAATTACTGAGGGTTGAGACTAGGAGCTCCCAAATTTCACTTTGATTAACTGTAACATTTTGCATATTGCAAGATCTTATGCGTATGTTACTTGCAGTTGTATTTTCTATCACATGGCTCTCTATTAGCCTGTAAAAGGTCATGAGCGGTGTACTGGCTACTGCTGTTTGCTAAAATATCATAAACTCATAATGTATTATCTAGACTTGTTCTTGGTAGTACCAGACTGATAATATAATGCGGTTAATCTT] [+] EMBL AK110711 [CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCAGACGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGAGGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGGCAAGCAGGGAAGGACGGTGGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGTATATAAACCTTTGAATTTGAAATAATCTATTCCTTGTTCTCCATGAACCACACTGGTCTTATTAATTAGTTCTTTGATCCTTCCCTTTTAAAGTAAATGTTATAACTGACTTACAATTGCCTATATATAAATGTTGAACCATGAAAGAACTGCCAATGAGTTCGGCTGGTCAGCATGCAACCCGGTTTCGATCCCCAGTGTCCAAGGGGACCCCTCAGTTAAAAAATCATCTAGTTCAAAATAAAAGAAAATGTAGCAAGAATTAGATATTGCAACCATGTGGTTTATGTAGAAATTACTGAGGGTTGAGACTAGGAGCTCCCAAATTTCACTTTGATTAACTGTAACATTTTGCATATTGCAAGATCTTATGCGTATGTTACTTGCAGTTGTATTTTCTATCACATGGCTCTCTATTAGCCTGTAAAAGGTCATGAGCGGTGTACTGGCTACTGCTGTTTGCTAAAATATCATAAACTCATAATGTATTATCTAGACTTGTTCTTGGTAGTACCAGACTGATAATATAATGCGGTTAATCTT] consensusID : consensus_7249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 815 fasta sequence [CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCAGGCGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGAGGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGTCAAGCAGGGAAGGACGGTGGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGCAACTTTCTGGAGTTCGTTCATTTGGCTATGTGAATTCTAGATGGATTTCCTTGGCACCTAATTTTATTATGAATCAGACATATGATTCATGTATGGAAAATTTTTGATGACATCAAGAGTAATAGAGCCAGAGTTCGCTGTGTGGGCGTGCATGTGCGTGAGAATGGTCTGAAACAAGTTTTTTACTCTGAAGAAATGCTCTGGTTAGTTCTTCTATGCAAACAGTTCAACTTACATCCTTTTAACTATACAAATGTTCATTTTCCATCCCTCACCCAAACCACAACGGTTT] [+] EMBL CB630571 [CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCAGGCGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGAGGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGTCAAGCAGGGAAGGACGGTGGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGCAACTTTCTGGAGTTCGTTCATTTGGCTATGTGAATTCTAGATGGATTTCCTTGGCACCTAATTTTATTATGAATCAGACATATGATTCATGTATGGAAAATTTTTGATGACATCAAGAGTAATAGAGCCAGAGTTCGCTGTGTGGGCGTGCATGTGCGTGAGAATGGTCTGAAACAAGTTTTTTACTCTGAAGAAATGCTCTGGTTAGTTCTTCTATGCAAACAGTTCAACTTACATCCTTTTAACTATACAAATGTTCATTTTCCATCCCTCACCCAAACCACAACGGTTT] [+] EMBL CB630319 [CGAGCACGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCAGGCGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGAGGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGTCAAGCAGGGAAGGACGGTGGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGCAACTTTCTGGAGTTCGTTCATTTGGCTATGTGAATTCTAGATGGATTTCCTTGGCACCTAATTTTATTATGAATCAGACATATGATTCATGTATGGAAAATTTTTGATGACATCAAGAGTAATAGAGCCAGAGTTCGCTGTGTGGGCGTGCATGTGCGTGAGAATGGTCTGAAACAAGTTTTTTACTCTGAAGAAATGCTCTGGTTAGTTCTTCTATGCAAACAGTTCAACTTACATCCTTTTAACTATACAAATGGTCATTTT ] consensusID : consensus_7249#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [CACGTCTCTCGGTCTCTCCGCCTTCCCCTTCGACGGCGCGGCGGCGAGGCGCAGCAGCGGAACGGCTCCGGCGGCGAGGATCTGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGCTTCTTCTTTGCACTAGCAAAGTGTAAACCATGTGTTTGGTGTTTGCACAAGGAGGAAATGAAATAGGAATGTATTTCTTTTGATGGTATGCAAGGAACATAATGATCATCATGTATCAAAACTCTTTATGCAGCAACTTTCTGGAGTTCGTTCATTTGGCTATGTGAATTCTAGATGGA] [+] EMBL AK111033 [CACGTCTCTCGGTCTCTCCGCCTTCCCCTTCGACGGCGCGGCGGCGAGGCGCAGCAGCGGAACGGCTCCGGCGGCGAGGATCTGGCTTTGATGGTTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTATTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCACAGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAGAACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAGGACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGCTTCTTCTTTGCACTAGCAAAGTGTAAACCATGTGTTTGGTGTTTGCACAAGGAGGAAATGAAATAGGAATGTATTTCTTTTGATGGTATGCAAGGAACATAATGATCATCATGTATCAAAACTCTTTATGCAGCAACTTTCTGGAGTTCGTTCATTTGGCTATGTGAATTCTAGATGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7249#0 CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCA 60 consensus_7249#1 CGAGCAAGAGGAGGCGTGCGGCGGGCGCAGCGTGCTCCGTGCTTGCCGCGAGCTGGCGCA 60 consensus_7249#2 ------------------------------------------------------------ consensus_7249#0 GACGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGA 120 consensus_7249#1 GGCGGCAGCGCAGCGGCGCGGTGAGCGCGGCACAGGCTGCAACGCTGCTGGTTGCAGGGA 120 consensus_7249#2 ------------------------------------------------------------ consensus_7249#0 GGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGGCAAGCAGGGAAGGACGGT 180 consensus_7249#1 GGCCAGAGGCAGTCAGGAAGCGCCTCGGCCTTGGCCGCTCGTCAAGCAGGGAAGGACGGT 180 consensus_7249#2 ----------------CACGTCTCTCGGTCTCTCCGCCTTCCCCTTCGACGGCG--CGGC 42 * * ***** ** * ** * * * * *** consensus_7249#0 GGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGG 240 consensus_7249#1 GGCAAGGTGCCTGGTTCCTACTTGGATTTGGCCATTTGGGAGCCTCAGAGGCTTTGATGG 240 consensus_7249#2 GGCGAGGCGC--AGCAGCGGAACGGCTCCGGCGG--CGAGGATCT----GGCTTTGATGG 94 *** *** ** * * ** * *** * * ** *********** consensus_7249#0 TTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTA 300 consensus_7249#1 TTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTA 300 consensus_7249#2 TTGCTTGACAAGGATGAAATGGCCTCCCGTTCAAAGTTATCTGGTATTCAGAGGCAGGTA 154 ************************************************************ consensus_7249#0 TTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCAC 360 consensus_7249#1 TTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCAC 360 consensus_7249#2 TTGGCATTGTACAGAGGATTCCTGCGGACAGCAAGGCTCAAGTCTCCAGAGGAGCGCCAC 214 ************************************************************ consensus_7249#0 AGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAG 420 consensus_7249#1 AGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAG 420 consensus_7249#2 AGAATTGAGTCTGTTGTCTCAGCAGAGTTCCGTGAGAATGCAAGAAACATTGATCGGAAG 274 ************************************************************ consensus_7249#0 AACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAG 480 consensus_7249#1 AACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAG 480 consensus_7249#2 AACTTTGTGTACATTGAATACTTGCTGAGAAGAGGGAAGAAACAGCTTGAGCAGCTCAAG 334 ************************************************************ consensus_7249#0 GACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGTATATAAACCTTTGAAT 540 consensus_7249#1 GACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAG-----CAACTTTCTGGA- 534 consensus_7249#2 GACCCTGATATTACTGGACTATCAACCCTTGAAATTAATAAGGC---TTCTTCTTTGCAC 391 ****************************************** * ** * consensus_7249#0 TTGAAATAATCTATTCCTTGTTCTCCATGAACCACACTGGTCTTATTAATTAGTTCTTTG 600 consensus_7249#1 --------GTTCGTTCATTTGGCTATGTGAATT---CTAG----ATGGATT---TCCTTG 576 consensus_7249#2 TAGCAA-AGTGTAAACCATGTGTTTGGTGT-TTGCACAAG---GAGGAAATG--AAATAG 444 * * * * ** * * * * * * * consensus_7249#0 ATCCTTCCCTTTTAAAGTAAATGTTATAACTGACTTACAATTGCCTATATATAAATGTTG 660 consensus_7249#1 GCACCTAA-TTTTATTATGAATCAGACATATGATTCATGTATGGAAAATTTTTGATGAC- 634 consensus_7249#2 GAATGTATTTCTTTTGATGG--TATGCAAGGAACATAATGATCATCATGTATCAAAACT- 501 * * ** * * * * * * * * * consensus_7249#0 AACCATGAAAGAACTGCCAATGAGTTCGGCTGGTCAGC-ATGCAACCCGGTTTCGATCCC 719 consensus_7249#1 ATCAAGAGTAATAGAGCCA--GAGTTCGCTGTGTGGGC-GTGCA---------------- 675 consensus_7249#2 CTTTATGCAGCAACTTTCTG-GAGTTCGTTCATTTGGCTATGTGA--------------- 545 * * * ******* * ** ** consensus_7249#0 CAGTGTCCAAGGGGACCCCTCAGTTAAAAAATCATCTAGTTCAAAATAAAAGAAAATGTA 779 consensus_7249#1 ---TGTGCGTGAGAATGGTCTGA--AACAAGTTTTTTACTCTGAAG-------AAATGCT 723 consensus_7249#2 -ATTCTAGATGGA----------------------------------------------- 557 * * * consensus_7249#0 GCAAGAATTAGATATTGCAACCATGTGGTTTA-TGTAGAAATTACTGAGGGTTGAGACTA 838 consensus_7249#1 CTGG---TTAGTTCTTCTATGCAAACAGTTCAACTTACATCCTTTTAACTATACAAATGT 780 consensus_7249#2 ------------------------------------------------------------ consensus_7249#0 GGAGCTCCCAAATTTCACTTTGATTAACTGTAACATTTTGCATATTGCAAGATCTTATGC 898 consensus_7249#1 TCATTTTCCATCCCTCACC----CAAACCACAACGGTTT--------------------- 815 consensus_7249#2 ------------------------------------------------------------ consensus_7249#0 GTATGTTACTTGCAGTTGTATTTTCTATCACATGGCTCTCTATTAGCCTGTAAAAGGTCA 958 consensus_7249#1 ------------------------------------------------------------ consensus_7249#2 ------------------------------------------------------------ consensus_7249#0 TGAGCGGTGTACTGGCTACTGCTGTTTGCTAAAATATCATAAACTCATAATGTATTATCT 1018 consensus_7249#1 ------------------------------------------------------------ consensus_7249#2 ------------------------------------------------------------ consensus_7249#0 AGACTTGTTCTTGGTAGTACCAGACTGATAATATAATGCGGTTAATCTT 1067 consensus_7249#1 ------------------------------------------------- consensus_7249#2 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||