cluster # 7250

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Oryza sativa
cluster # 7250 cluster # 7250 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7250#0 length = 1253 sequences # 1

consensus_7250#1 length = 794 sequences # 3

consensusID : consensus_7250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1253
fasta sequence

                              [ATCCATGACACCTCTGATCAACAAGGTACACCATAATTCTATTTCTTCCAAGCCAACTTTACATGCATGATCATACATGCACCAAAAACATGTACAATTCATTTAGTTTTTGTACGCATTTTGTAGCTAGTTGCTGAATTATGCGTGAATTTAGAGACTTTTTTTTTGTTTTGCAATGGTAATTAACACGTAGAACATCATGTGTGTTGTGTTGCAGAGGACAACATGAGGTCGTACATGGACGGCGGCGGCGCGGCGGCGTACGAGGAGGAGGAGGAGGAGGTTGAGGACGACGACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGGGGGCTCGGGGAGAAGAAGCGGCGGCTGGCGGCGGAGCAGGTGCGGGCGCTGGAGCGGAGCTTCGAGGCGGACAACAAGCTGGACCCGGAGCGGAAGGCCCGGATCGCCCGCGACCTTCGCCTCCACCCTCGCCAGGTCGCCGTCTGGTTCCAGAACCGCCGCGCGAGGTGGAAGACCAAGCAGATCGAGCGCGACTTCGCCGCCCTCCGCTCCCGCCACGACGCCCTCCGCCTCGAGTGCGACGCCCTCCGCCGCGACAAGGACGCCCTCGCCGCCGAGATCGCCGACCTCCGGGACAGGGTGGACGGCCAGATGTCCGTCAAGCTGGAGGCCGTGGCCGCGGACGAACACCAGCCGCCTCCGCCGCCGCCGCCGCCGCCACTGGCGTATAACAGCAAGGTGGTGGACGGCTCGACGGACAGCGACTCGAGCGCGGTGTTCAACGAGGAGGCGTCGCCGTACTCCGGCGCGGCCATCGACCACCACCACCACCAAACTCCGGCGAGCTACGACACGGCGGGGTTCACCTCCTTCTTCGCGCCATCCACCACGCTCACCTCGTCCCTCTCCTTCCCTTCCATGTTCCACGCGTCATCGCATTTCGATGGCCACCAAGAACTCCTCGTCGGCGGCGGCGGCGCCGGCGCAGTGGCCGACGCCGACCTCGGAGGCGCCGGATTCTTCGCCGGCGACGAGCACGCCGGCGGCCTCTCCTGGTACGGCGCCGAGGGTTGGTAGAAGCTAGAGCTTAGCTAGCTAGCGAGAGAGTGAGCTCAGCTAAGCTTAATTAGCTGGCTTGATTGCTTGCTTTGTGGCTGGTTGGTGACGCCATTGTTGTAAATTACGGCATTGTTAAGTTGTACATGCATGCATGGGGGTAATTATAACTAAAGTCAATTTCTATAGTTTTTACTAAAAAA]

[+] EMBL AY346329             [ATCCATGACACCTCTGATCAACAAGGTACACCATAATTCTATTTCTTCCAAGCCAACTTTACATGCATGATCATACATGCACCAAAAACATGTACAATTCATTTAGTTTTTGTACGCATTTTGTAGCTAGTTGCTGAATTATGCGTGAATTTAGAGACTTTTTTTTTGTTTTGCAATGGTAATTAACACGTAGAACATCATGTGTGTTGTGTTGCAGAGGACAACATGAGGTCGTACATGGACGGCGGCGGCGCGGCGGCGTACGAGGAGGAGGAGGAGGAGGTTGAGGACGACGACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGGGGGCTCGGGGAGAAGAAGCGGCGGCTGGCGGCGGAGCAGGTGCGGGCGCTGGAGCGGAGCTTCGAGGCGGACAACAAGCTGGACCCGGAGCGGAAGGCCCGGATCGCCCGCGACCTTCGCCTCCACCCTCGCCAGGTCGCCGTCTGGTTCCAGAACCGCCGCGCGAGGTGGAAGACCAAGCAGATCGAGCGCGACTTCGCCGCCCTCCGCTCCCGCCACGACGCCCTCCGCCTCGAGTGCGACGCCCTCCGCCGCGACAAGGACGCCCTCGCCGCCGAGATCGCCGACCTCCGGGACAGGGTGGACGGCCAGATGTCCGTCAAGCTGGAGGCCGTGGCCGCGGACGAACACCAGCCGCCTCCGCCGCCGCCGCCGCCGCCACTGGCGTATAACAGCAAGGTGGTGGACGGCTCGACGGACAGCGACTCGAGCGCGGTGTTCAACGAGGAGGCGTCGCCGTACTCCGGCGCGGCCATCGACCACCACCACCACCAAACTCCGGCGAGCTACGACACGGCGGGGTTCACCTCCTTCTTCGCGCCATCCACCACGCTCACCTCGTCCCTCTCCTTCCCTTCCATGTTCCACGCGTCATCGCATTTCGATGGCCACCAAGAACTCCTCGTCGGCGGCGGCGGCGCCGGCGCAGTGGCCGACGCCGACCTCGGAGGCGCCGGATTCTTCGCCGGCGACGAGCACGCCGGCGGCCTCTCCTGGTACGGCGCCGAGGGTTGGTAGAAGCTAGAGCTTAGCTAGCTAGCGAGAGAGTGAGCTCAGCTAAGCTTAATTAGCTGGCTTGATTGCTTGCTTTGTGGCTGGTTGGTGACGCCATTGTTGTAAATTACGGCATTGTTAAGTTGTACATGCATGCATGGGGGTAATTATAACTAAAGTCAATTTCTATAGTTTTTACTAAAAAA]




>consensus_7250#0
ATCCATGACACCTCTGATCAACAAGGTACACCATAATTCTATTTCTTCCAAGCCAACTTT
ACATGCATGATCATACATGCACCAAAAACATGTACAATTCATTTAGTTTTTGTACGCATT
TTGTAGCTAGTTGCTGAATTATGCGTGAATTTAGAGACTTTTTTTTTGTTTTGCAATGGT
AATTAACACGTAGAACATCATGTGTGTTGTGTTGCAGAGGACAACATGAGGTCGTACATG
GACGGCGGCGGCGCGGCGGCGTACGAGGAGGAGGAGGAGGAGGTTGAGGACGACGACGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGGGGGCTCGGGGAGAAGAAGCGGCGGCTG
GCGGCGGAGCAGGTGCGGGCGCTGGAGCGGAGCTTCGAGGCGGACAACAAGCTGGACCCG
GAGCGGAAGGCCCGGATCGCCCGCGACCTTCGCCTCCACCCTCGCCAGGTCGCCGTCTGG
TTCCAGAACCGCCGCGCGAGGTGGAAGACCAAGCAGATCGAGCGCGACTTCGCCGCCCTC
CGCTCCCGCCACGACGCCCTCCGCCTCGAGTGCGACGCCCTCCGCCGCGACAAGGACGCC
CTCGCCGCCGAGATCGCCGACCTCCGGGACAGGGTGGACGGCCAGATGTCCGTCAAGCTG
GAGGCCGTGGCCGCGGACGAACACCAGCCGCCTCCGCCGCCGCCGCCGCCGCCACTGGCG
TATAACAGCAAGGTGGTGGACGGCTCGACGGACAGCGACTCGAGCGCGGTGTTCAACGAG
GAGGCGTCGCCGTACTCCGGCGCGGCCATCGACCACCACCACCACCAAACTCCGGCGAGC
TACGACACGGCGGGGTTCACCTCCTTCTTCGCGCCATCCACCACGCTCACCTCGTCCCTC
TCCTTCCCTTCCATGTTCCACGCGTCATCGCATTTCGATGGCCACCAAGAACTCCTCGTC
GGCGGCGGCGGCGCCGGCGCAGTGGCCGACGCCGACCTCGGAGGCGCCGGATTCTTCGCC
GGCGACGAGCACGCCGGCGGCCTCTCCTGGTACGGCGCCGAGGGTTGGTAGAAGCTAGAG
CTTAGCTAGCTAGCGAGAGAGTGAGCTCAGCTAAGCTTAATTAGCTGGCTTGATTGCTTG
CTTTGTGGCTGGTTGGTGACGCCATTGTTGTAAATTACGGCATTGTTAAGTTGTACATGC
ATGCATGGGGGTAATTATAACTAAAGTCAATTTCTATAGTTTTTACTAAAAAA

consensusID : consensus_7250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 794
fasta sequence

                              [AAGCCAACTTTACATGCATGATCATACATGCACCAAAAACATGTACAATTCATTTAGTTTTTGTACGCATTTNGTAGCTAGTTGCTGAATTATGCGTGAATTTAGAGACTTTTTTTTTGTTTTGCAATGGTAATTAACACGTAGAACATCATGTGTGTTGTGTTGCAGAGGACAACATGAGGTCGTACATGGACGGCGGCGGCGCGGCGGCGTACGAGGAGGAGGAGGAGGAGGTTGAGGACGACGCCGCCGCCAGTGGCGTATAACAGCAAGGTGGTGGACGGCTCGACGGACAGCGACTCGAGCGCGGTGTTCAACGAGGAGGCGTCGCCGTACTCCGGCGCGGCCATCGACCACCACCACCACCAAACTCCGGCGAGCTACGACACGGCGGGGTTCACCTCCTTCTTCGCGCCATCCACCACGCTCACCTCGTCCCTCTCCTTCCCTTCCATGTTCCACGCGTCATCGCATTTCGATGGCCACCAAGAACTCCTCGTCGGCGGCGGCGGCGCCGGCGCAGTGGCCGACGCCGACCTCGGAGGCGCCGGATTCTTCGCCGGCGACGAGCACGCCGGCGGCCTCTCCTGGTACGGCGCCGAGGGTTGGTAGAAGCTAGAGCTTAGCTAGCTAGCGAGAGAGTGAGCTCAGCTAAGCTTAATTAGCTGGCTTGATTGCTTGCTTTGTGGCTGGTTGGTGACGCCATTGTTGTAAATTACGGCATTGTTAAGTTGTACATGCATGCATGGGGGTAATTATAACTAAAGTCAATTTCTATAGTTTTTACTAAAAAA]

[-] EMBL CA756485             [AAGCCAACTTTACATGCATGATCATACATGCACCAAAAACATGTACAATTCATTTAGTTTTTGTACGCATTTNGTAGCTAGTTGCTGAATTATGCGTGAATTTAGAGACTTTTTTTTTGTTTTGCAATGGTAATTAACACGTAGAACATCATGTGTGTTGTGTTGCAGAGGACAACATGAGGTCGTACATGGACGGCGGCGGCGCGGCGGCGTACGAGGAGGAGGAGGAGGAGGTTGAGGACGACGACGGCGGCGGCGGCGTATAACAGCAAGGTGGTGGACGGCTCGACGGACAGCGACTCGAGCGCGGTGTTCAACGAGGAGGCGTCGCCGTACTCCGGCGCGGCCATCGACCACCACCACCACCAAACTCCGGCGAGCTACGACACGGCGGGGTTCACCTCCTTCTTCGCGCCATCCACCACGCTCACCTCGTCCCTCTCCTTCCCTTCCATGTTCCACGCGTCATCGCATTTCGATGGCCACCAAGAACTCCTCGTCGGCGGCGGCGGCGCCGGCGCAGTGGCCGACGCCGACCTCGGAGGCGCCGGATTCTTCGCCGGCGACGAGCACGCCGGCGGCCTCTCCTGGTACGGCGCC                                                                                                                                                                                                  ]
[+] EMBL AU097074             [                                                                                                                                                                                                                GGCGTACGAGGAGGAAGAAGAAGNAGTTGAGGACGACGCCGCCGCCACTGGCGTATAACAGCAAGGTGGTGGACGGCTCGACGGACAGCGACTCGAGCGCGGTGTTCAACGAGGAGGCGTCGCCGTACTCCGGCGCGGCCATCGACCACCACCACCACCAAACTCCGGCGAGCTACGACACGGCGGGGTTCACCTCCTTCTTCGCGCCATCCACCACGCTCACCTCGTCCCTCTCCTTCCCTTCCATGTTCCACGCGTCATCGCATTTCGATGGCCACCAAGAACTCCTCGTCGGCGGCGGCGGCGCCGGCGCAGTGGCCGACGCCGACCTCGGAGGCGCCGGATTCTTCGCCGGCGACGAGCACGCCGGCGGCCTCTCCTGGTACGGCGCCGAGGGTTGGTAGAAGCTAGAGCTTAGCTAGCTAGCGAGAGAGTGAGCTCAGCTAAGCTTAATTAGCTGGCTTGATTGCTTGCTTTGTGGCTGGTTGGTGACGCCATTGTTGTAAATTACGGCATTGTTAAGTTGTACATGCATGCATGGGGGTAATTATAACTAAAGTCAATTTCTATAGTTTTTACTAAAAAA]
[+] EMBL AU097062             [                                                                                                                                                                                                                             GAGGAGGAGGAGTTTGAGGACGACGCCGCCGCCANTGGCGTATAACAGCAAGTTGGTGGACGGCTCGACGGACAGCGACTCGAGCGCGGTGTTCAACGAGGAGGCGTCGCCGTACTCCGGCGCGGCCATCGACCACCACCACCACCAAACTCCGGCGAGCTACGACACGGCGGGGTTCACCTCCTTCTTCGCGCCATCCACCACGCTCACCTCGTCCCTCTCCTTCCCTTCCATGTTCCACGCGTCATCGCATTTCGATGGCCACCAAGAACTCCTCGTCGGCGGCGGCGGCGCCGGCGCAGTGGCCGACGCCGACCTCGGAGGCGCCGGATTCTTCGCCGGCGACGAGCACGCCGGCGGCCTCTCCTGGTACGGCGCCGAGGGTTGGTAGAAGCTAGAGCTTAGCTAGCTAGCGAGAGAGTGAGCTCAGCTAAGCTTAATTAGCTGGCTTGATTGCTTGCTTTGTGGCTGGTTGGTGACGCCATTGTTGTAAATTACGGCATTGTTAAGTTGTACATGCATGCATGGGGGTAATTATAACTAAAGTCAATTTCTATAGTTTTTACTAAAAAA]




>consensus_7250#1
AAGCCAACTTTACATGCATGATCATACATGCACCAAAAACATGTACAATTCATTTAGTTT
TTGTACGCATTTNGTAGCTAGTTGCTGAATTATGCGTGAATTTAGAGACTTTTTTTTTGT
TTTGCAATGGTAATTAACACGTAGAACATCATGTGTGTTGTGTTGCAGAGGACAACATGA
GGTCGTACATGGACGGCGGCGGCGCGGCGGCGTACGAGGAGGAGGAGGAGGAGGTTGAGG
ACGACGCCGCCGCCAGTGGCGTATAACAGCAAGGTGGTGGACGGCTCGACGGACAGCGAC
TCGAGCGCGGTGTTCAACGAGGAGGCGTCGCCGTACTCCGGCGCGGCCATCGACCACCAC
CACCACCAAACTCCGGCGAGCTACGACACGGCGGGGTTCACCTCCTTCTTCGCGCCATCC
ACCACGCTCACCTCGTCCCTCTCCTTCCCTTCCATGTTCCACGCGTCATCGCATTTCGAT
GGCCACCAAGAACTCCTCGTCGGCGGCGGCGGCGCCGGCGCAGTGGCCGACGCCGACCTC
GGAGGCGCCGGATTCTTCGCCGGCGACGAGCACGCCGGCGGCCTCTCCTGGTACGGCGCC
GAGGGTTGGTAGAAGCTAGAGCTTAGCTAGCTAGCGAGAGAGTGAGCTCAGCTAAGCTTA
ATTAGCTGGCTTGATTGCTTGCTTTGTGGCTGGTTGGTGACGCCATTGTTGTAAATTACG
GCATTGTTAAGTTGTACATGCATGCATGGGGGTAATTATAACTAAAGTCAATTTCTATAG
TTTTTACTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7250#0      ATCCATGACACCTCTGATCAACAAGGTACACCATAATTCTATTTCTTCCAAGCCAACTTT 60
consensus_7250#1      ------------------------------------------------------------
                                                                                  

consensus_7250#0      ACATGCATGATCATACATGCACCAAAAACATGTACAATTCATTTAGTTTTTGTACGCATT 120
consensus_7250#1      ------------------------------------------------------------
                                                                                  

consensus_7250#0      TTGTAGCTAGTTGCTGAATTATGCGTGAATTTAGAGACTTTTTTTTTGTTTTGCAATGGT 180
consensus_7250#1      ------------------------------------------------------------
                                                                                  

consensus_7250#0      AATTAACACGTAGAACATCATGTGTGTTGTGTTGCAGAGGACAACATGAGGTCGTACATG 240
consensus_7250#1      ------------------------------------------------------------
                                                                                  

consensus_7250#0      GACGGCGGCGGCGCGGCGGCGTACGAGGAGGAGGAGGAGGAGGTTGAGGACGACGACGGC 300
consensus_7250#1      ------------------------------------------------------------
                                                                                  

consensus_7250#0      GGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGGGGGCTCGGGGAGAAGAAGCGGCGGCTG 360
consensus_7250#1      ------------------------------------------------------------
                                                                                  

consensus_7250#0      GCGGCGGAGCAGGTGCGGGCGCTGGAGCGGAGCTTCGAGGCGGACAACAAGCTGGACCCG 420
consensus_7250#1      ------------------------------------------------------------
                                                                                  

consensus_7250#0      GAGCGGAAGGCCCGGATCGCCCGCGACCTTCGCCTCCACCCTCGCCAGGTCGCCGTCTGG 480
consensus_7250#1      --------------------AAGCCAACTTTACATGCATGATCATACATGCACCAAAAAC 40
                                            ** * ***  * * **   **       * **      

consensus_7250#0      TTCCAGAACCGCCGCGCGAGGTGGAAGACCAAGCAGATCGAGCGCGACTTCGCCGCCCTC 540
consensus_7250#1      ATGTACAATT----CATTTAGTTTTTG--TACGCATTTNGTA-GCTAGTT-GCTGAATTA 92
                       *  * **      *     **    *   * ***  * *   ** * ** ** *   * 

consensus_7250#0      CGCTCCCGCCACGACGCCCTCCGCCTCGAGTGCGACGCCCTCCGCCGCGACAAGGACGCC 600
consensus_7250#1      TGCGTGAATTTAGAGACTTTTTTTTTGTTTTGCAATGGTAATTAACACG--TAGAACATC 150
                       **         **  *  *     *    *** * *        * **   ** **  *

consensus_7250#0      CTCGCCGCCGAGATCGCCGACCTCCGGGACAGGGTGGACGGCCAGATGTCCGTCAAGCTG 660
consensus_7250#1      ATGTGTGTTGTG-TTGCAGA------GGACAACATGAGGTCGTACATGGACGGCGGCGGC 203
                       *    *  * * * ** **      *****   **       * ***  ** *      

consensus_7250#0      GAGGCCGTGGCCGCGGACGAACACCAGCCGCCTCCGCCGCCGCCGCCGCCGCCACTGGCG 720
consensus_7250#1      GCGGCGGCGTACGAGGAGGAGGAGGAGGAGGTTGAG--GACGACGCCGCCGCCAGTGGCG 261
                      * *** * *  ** *** **  *  **  *  *  *  * ** *********** *****

consensus_7250#0      TATAACAGCAAGGTGGTGGACGGCTCGACGGACAGCGACTCGAGCGCGGTGTTCAACGAG 780
consensus_7250#1      TATAACAGCAAGGTGGTGGACGGCTCGACGGACAGCGACTCGAGCGCGGTGTTCAACGAG 321
                      ************************************************************

consensus_7250#0      GAGGCGTCGCCGTACTCCGGCGCGGCCATCGACCACCACCACCACCAAACTCCGGCGAGC 840
consensus_7250#1      GAGGCGTCGCCGTACTCCGGCGCGGCCATCGACCACCACCACCACCAAACTCCGGCGAGC 381
                      ************************************************************

consensus_7250#0      TACGACACGGCGGGGTTCACCTCCTTCTTCGCGCCATCCACCACGCTCACCTCGTCCCTC 900
consensus_7250#1      TACGACACGGCGGGGTTCACCTCCTTCTTCGCGCCATCCACCACGCTCACCTCGTCCCTC 441
                      ************************************************************

consensus_7250#0      TCCTTCCCTTCCATGTTCCACGCGTCATCGCATTTCGATGGCCACCAAGAACTCCTCGTC 960
consensus_7250#1      TCCTTCCCTTCCATGTTCCACGCGTCATCGCATTTCGATGGCCACCAAGAACTCCTCGTC 501
                      ************************************************************

consensus_7250#0      GGCGGCGGCGGCGCCGGCGCAGTGGCCGACGCCGACCTCGGAGGCGCCGGATTCTTCGCC 1020
consensus_7250#1      GGCGGCGGCGGCGCCGGCGCAGTGGCCGACGCCGACCTCGGAGGCGCCGGATTCTTCGCC 561
                      ************************************************************

consensus_7250#0      GGCGACGAGCACGCCGGCGGCCTCTCCTGGTACGGCGCCGAGGGTTGGTAGAAGCTAGAG 1080
consensus_7250#1      GGCGACGAGCACGCCGGCGGCCTCTCCTGGTACGGCGCCGAGGGTTGGTAGAAGCTAGAG 621
                      ************************************************************

consensus_7250#0      CTTAGCTAGCTAGCGAGAGAGTGAGCTCAGCTAAGCTTAATTAGCTGGCTTGATTGCTTG 1140
consensus_7250#1      CTTAGCTAGCTAGCGAGAGAGTGAGCTCAGCTAAGCTTAATTAGCTGGCTTGATTGCTTG 681
                      ************************************************************

consensus_7250#0      CTTTGTGGCTGGTTGGTGACGCCATTGTTGTAAATTACGGCATTGTTAAGTTGTACATGC 1200
consensus_7250#1      CTTTGTGGCTGGTTGGTGACGCCATTGTTGTAAATTACGGCATTGTTAAGTTGTACATGC 741
                      ************************************************************

consensus_7250#0      ATGCATGGGGGTAATTATAACTAAAGTCAATTTCTATAGTTTTTACTAAAAAA 1253
consensus_7250#1      ATGCATGGGGGTAATTATAACTAAAGTCAATTTCTATAGTTTTTACTAAAAAA 794
                      *****************************************************