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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1393 fasta sequence
[GCTCGCCGCCGCTTCGACGGAGATGGGCGGCGCCGCCGCCGCCGCCGCCGTGGCCCTGCTCGCGGCCACTCGCCGGCGCCCCGCTGCGGGCCCGCTGGCGTTCCTCCTCCCTCGCGCGGCCCGCGCGGGGCTCCACGAGGCTGCTGCTCCGGCGGCGGAGGAGGAGAAGGGGAGGACCCGGAGGAGGCGGAGGAGGAGGAGCAGCAGCAGCCGCCTTCTCGGGCCGGACATCCCCGACACCTGGGACTCGCCCCCGCGCGCCGCGGCGCGGCCGTCTCCCCCGAGCGGCGCCGGAGTTGATTATGACTCCACTGCGACCATTATTGATGGCAAGTCTGTCGCGGAAGACATAAGGTTTCAGATCGCTGAAGAAGTTCGTCAAATGAAAAATGCAGTGGGGCATGTGCCTGGCCTAGCTGTTGTATTGGTCGGCGATAGAAGGGACTCTGAGTCATACGTGCGATACAAAATTAAGGGCTGTGAGGAGGTTGGAATAAAGTCCTTGTTGGCGGAGTTGCCTGGGAACTGTACGGAAGACGTAGTGGTGGATTCTGTGTCAAGATTCAATGAAGATCCATCTGTTCATGGCATTCTTGTGCAACTACCTCTACCACAGCATATGGATGAAGAAAGGATTCTGAGCGCTATTAGCCTAGAGAAGGATGTTGATGGTTTCCATCCATTGAATGTTGGTAATCTTGCCCTCAGAAGCCGGAAGCCTTTATTTGTGCCCTGTGCTGCAAAGGCTTGCCTTGAGTTATTGCTCCAGTCTGGGATTGAACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCCACTTCTTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCCAGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGTAAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGAGGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGTGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGTATGATTAGCATGTCCATGCTTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK059603 [GCTCGCCGCCGCTTCGACGGAGATGGGCGGCGCCGCCGCCGCCGCCGCCGTGGCCCTGCTCGCGGCCACTCGCCGGCGCCCCGCTGCGGGCCCGCTGGCGTTCCTCCTCCCTCGCGCGGCCCGCGCGGGGCTCCACGAGGCTGCTGCTCCGGCGGCGGAGGAGGAGAAGGGGAGGACCCGGAGGAGGCGGAGGAGGAGGAGCAGCAGCAGCCGCCTTCTCGGGCCGGACATCCCCGACACCTGGGACTCGCCCCCGCGCGCCGCGGCGCGGCCGTCTCCCCCGAGCGGCGCCGGAGTTGATTATGACTCCACTGCGACCATTATTGATGGCAAGTCTGTCGCGGAAGACATAAGGTTTCAGATCGCTGAAGAAGTTCGTCAAATGAAAAATGCAGTGGGGCATGTGCCTGGCCTAGCTGTTGTATTGGTCGGCGATAGAAGGGACTCTGAGTCATACGTGCGATACAAAATTAAGGGCTGTGAGGAGGTTGGAATAAAGTCCTTGTTGGCGGAGTTGCCTGGGAACTGTACGGAAGACGTAGTGGTGGATTCTGTGTCAAGATTCAATGAAGATCCATCTGTTCATGGCATTCTTGTGCAACTACCTCTACCACAGCATATGGATGAAGAAAGGATTCTGAGCGCTATTAGCCTAGAGAAGGATGTTGATGGTTTCCATCCATTGAATGTTGGTAATCTTGCCCTCAGAAGCCGGAAGCCTTTATTTGTGCCCTGTGCTGCAAAGGCTTGCCTTGAGTTATTGCTCCAGTCTGGGATTGAACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCCACTTCTTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCCAGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGTAAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGAGGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGTGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGTATGAT ]
[+] EMBL CB684120 [ CACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCCACTTCTTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCCAGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGTAAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGAGGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGTGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGTATGA ]
[+] EMBL AU162365 [ ACTGGAGATGTCTGCTTCGAAGAA CTGTGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGTATGATTAGCATGTCCATGCTTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[AGGACGAGACAAGGGGGGGATTGAACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCTACTTCTTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCCAGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGTAAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGAGGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGNGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGNAT]
[+] EMBL CA766514 [AGGACGAGACAAGGGGGGGATTGAACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCTACTTCTTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCCAGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGTAAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGAGGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGNGAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGATGCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCCTGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCGCTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGCTGAATAAATATTGNAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7251#0 GCTCGCCGCCGCTTCGACGGAGATGGGCGGCGCCGCCGCCGCCGCCGCCGTGGCCCTGCT 60
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 CGCGGCCACTCGCCGGCGCCCCGCTGCGGGCCCGCTGGCGTTCCTCCTCCCTCGCGCGGC 120
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 CCGCGCGGGGCTCCACGAGGCTGCTGCTCCGGCGGCGGAGGAGGAGAAGGGGAGGACCCG 180
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 GAGGAGGCGGAGGAGGAGGAGCAGCAGCAGCCGCCTTCTCGGGCCGGACATCCCCGACAC 240
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 CTGGGACTCGCCCCCGCGCGCCGCGGCGCGGCCGTCTCCCCCGAGCGGCGCCGGAGTTGA 300
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 TTATGACTCCACTGCGACCATTATTGATGGCAAGTCTGTCGCGGAAGACATAAGGTTTCA 360
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 GATCGCTGAAGAAGTTCGTCAAATGAAAAATGCAGTGGGGCATGTGCCTGGCCTAGCTGT 420
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 TGTATTGGTCGGCGATAGAAGGGACTCTGAGTCATACGTGCGATACAAAATTAAGGGCTG 480
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 TGAGGAGGTTGGAATAAAGTCCTTGTTGGCGGAGTTGCCTGGGAACTGTACGGAAGACGT 540
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 AGTGGTGGATTCTGTGTCAAGATTCAATGAAGATCCATCTGTTCATGGCATTCTTGTGCA 600
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 ACTACCTCTACCACAGCATATGGATGAAGAAAGGATTCTGAGCGCTATTAGCCTAGAGAA 660
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 GGATGTTGATGGTTTCCATCCATTGAATGTTGGTAATCTTGCCCTCAGAAGCCGGAAGCC 720
consensus_7251#1 ------------------------------------------------------------
consensus_7251#0 TTTATTTGTGCCCTGTGCTGCAAAGGCTTGCCTTGAGTTATTGCTCCAGTCTGGGATTGA 780
consensus_7251#1 ------------------------------------AGGACGAGACAAGGGGGGGATTGA 24
* * ** ********
consensus_7251#0 ACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCCACTTC 840
consensus_7251#1 ACTCATGGGGAAACATGTCACTGTGATTGGGAGAAGCAAAGTTGTTGGGTTGCCTACTTC 84
****************************************************** *****
consensus_7251#0 TTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCC 900
consensus_7251#1 TTTACTTTTACAGAGACACCATGCCACTGTTAGTATTATCCATGCTTTCACAACAAATCC 144
************************************************************
consensus_7251#0 AGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGT 960
consensus_7251#1 AGAAGAGATTACCCGTCAATCTGATATTGTGATCTCAGCTGCTGGAGTGGCCAATCTTGT 204
************************************************************
consensus_7251#0 AAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGA 1020
consensus_7251#1 AAGAGGAAGCTGGTTGAAGAAAGGTGCAGTTGTGATCGATGTTGGAACAAACCCAATTGA 264
************************************************************
consensus_7251#0 GGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGT 1080
consensus_7251#1 GGATCCAACCAGTGATTACGGCTATCGATTAACTGGAGATGTCTGCTTCGAAGAAGCTGN 324
***********************************************************
consensus_7251#0 GAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGAT 1140
consensus_7251#1 GAAGTTGGCCTCTGCTATAACTCCAGTTCCTGGTGGTGTGGGACCGGTGACCATTGCGAT 384
************************************************************
consensus_7251#0 GCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCC 1200
consensus_7251#1 GCTTCTTGCGAATACACTTGACTCAGCGAAACTAGCTTACGGCTTAGCTACTGAATCCCC 444
************************************************************
consensus_7251#0 TGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCG 1260
consensus_7251#1 TGAATTGTAATCTTGCTTCACTTTGCCTTTGTAAATTACTTTTTTTTCCCCTTTTTATCG 504
************************************************************
consensus_7251#0 CTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGC 1320
consensus_7251#1 CTCGTTGCTCTCACTTTTGGCTGTTTGAGAGCTGGGATGTAAGTGTAACATACATTTTGC 564
************************************************************
consensus_7251#0 TGAATAAATATTGTATGATTAGCATGTCCATGCTTGCAGTAAAAAAAAAAAAAAAAAAAA 1380
consensus_7251#1 TGAATAAATATTGNAT-------------------------------------------- 580
************* **
consensus_7251#0 AAAAAAAAAAAAA 1393
consensus_7251#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||