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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1173 fasta sequence
[GGGGCCAACCGCCGCTAAGTCCAAAGAGAGAGAGAAAAAAAAAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCTCCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTCGGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCACGGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTCCCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTCCAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGGCTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGCGCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGTCGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGCCCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGACTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAAGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATAGAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACCGTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGTCTCTTGTGTCAAAGATAACATTGTTGCCATGATGCCATCCCCTCTTGCTCTGTTGTGTGGACTTGTGATTGGGCCAT]
[+] EMBL AK102605 [GGGGCCAACCGCCGCTAAGTCCAAAGAGAGAGAGAAAAAAAAAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCTCCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTCGGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCACGGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTCCCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTCCAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGGCTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGCGCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGTCGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGCCCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGACTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAAGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATAGAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACCGTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGTCTCTTGTGTCAAAGATAACATTGTTGCCATGATGCCATCCCCTCTTGCTCTGTTGTGTGGACTTGTGATTGGGCCAT]
[+] EMBL BE040217 [ AGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTT TTTTTATTATTCCATAGAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACCGTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGTCTCTTGTGTCAAAGATAACATT ]
consensusID : consensus_7255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1115 fasta sequence
[AGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGAGAGAGAGAAAAAAAAAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCTCCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTCGGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCACGGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTCCCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTCCAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGGCTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGCGCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGTCGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGCCCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGACTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAAGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATAGAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACCGTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGT]
[+] EMBL AK059834 [AGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGAGAGAGAGAAAAAAAAAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCTCCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTCGGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCACGGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTCCCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTCCAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGGCTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGCGCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGTCGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGCCCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGACTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAAGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATAGAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACCGTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGT]
[+] EMBL AK106139 [ GAGAAAAAAAAAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCTCCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTCGGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCACGGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTCCCTCCGCGCCACCATCGAGTGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTCCAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGGCTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGCGCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGTCGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGCCCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGACTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAAGCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCATGCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATAGAGCAAGCAGTGAAGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7255#0 --------------GGGGCCAACCGCCGCTAA-----GTCCAAAGAGAGAGAGAAAAAAA 41
consensus_7255#1 AGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGAGAGAGAGAAAAAAA 60
* * *** *** * * *****************
consensus_7255#0 AAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCT 101
consensus_7255#1 AAAAAACTCTCCGCAGCCAAATCGAGATCTCTTTCCCGTCCTCCAAGCCGGCGACTCCCT 120
************************************************************
consensus_7255#0 CCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTC 161
consensus_7255#1 CCCCGTCCGGCGGCGGCGTCGGCGTCGGCGTCGGCGGCGAAGAGATCGATCGATGGCGTC 180
************************************************************
consensus_7255#0 GGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCAC 221
consensus_7255#1 GGCGTTGTCCTCCCTGCGCTACGGCGACAGCCTCTCGGTGGTGGCGATCTCGGGCGCCAC 240
************************************************************
consensus_7255#0 GGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTC 281
consensus_7255#1 GGCCGTGCTCTGCGAGGCCATCTCCTGGCTCCTCATCTACCGCACCGCCACCTACAACTC 300
************************************************************
consensus_7255#0 CCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTC 341
consensus_7255#1 CCTCCGCGCCACCATCGAGCGCCACTCCCGCAAGCTCGACGCCATGAAGGCCGGCGCCTC 360
************************************************************
consensus_7255#0 CAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGG 401
consensus_7255#1 CAACTCCTCGTCCTCCTCCTCCGCCGGCGCCGGCGCCTCCGGGTCCTCCCAGCCCGCGGG 420
************************************************************
consensus_7255#0 CTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGC 461
consensus_7255#1 CTCCTCCTCGTCGCGGGCCAAGAAGATGGACCGCGTCGAGACCAGCCTCAAGGACGCCGC 480
************************************************************
consensus_7255#0 GCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGT 521
consensus_7255#1 GCGGGAGCTGTCGCTCTCCAAGCTCAAGTCCGGCGCCGTCGTGGCCGCCGTGCTCTTCGT 540
************************************************************
consensus_7255#0 CGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGC 581
consensus_7255#1 CGTCTTCGGCCTGCTCAACTCCCTCTTCGAGGGCCGCGCCGTCGCCAAGCTGCCCTTCGC 600
************************************************************
consensus_7255#0 CCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGA 641
consensus_7255#1 CCCGGTGCCGCTCGTCCAGCGCATGAGCCACCGTGGCGTCCCCGGGAACGACCCCACCGA 660
************************************************************
consensus_7255#0 CTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAA 701
consensus_7255#1 CTGCTCCATGGTCTTCCTCTACTTCCTCTGCTCCATCAGCATCCGCACCAACCTGCAGAA 720
************************************************************
consensus_7255#0 GCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCAT 761
consensus_7255#1 GCTGCTCGGCTTCGCGCCGCCCCGCGCCGCGGCCGCCGCCGGCGGGGGCCTCTTCCCCAT 780
************************************************************
consensus_7255#0 GCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGAT 821
consensus_7255#1 GCCCGATCCGAAAGTAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGAT 840
************************************************************
consensus_7255#0 TTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCA 881
consensus_7255#1 TTCGGCATGGACTTCCGTCTCCGAGAAGAGTGATTACGATGGAAACGGGGAGAAATGCCA 900
************************************************************
consensus_7255#0 TGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGT 941
consensus_7255#1 TGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAGCCAGGT 960
************************************************************
consensus_7255#0 ATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATA 1001
consensus_7255#1 ATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATA 1020
************************************************************
consensus_7255#0 GAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACC 1061
consensus_7255#1 GAGCAAGCAGTGAAGTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACC 1080
************************************************************
consensus_7255#0 GTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGTCTCTTGTGTCAAAGATAACATTGTT 1121
consensus_7255#1 GTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTGT------------------------- 1115
***********************************
consensus_7255#0 GCCATGATGCCATCCCCTCTTGCTCTGTTGTGTGGACTTGTGATTGGGCCAT 1173
consensus_7255#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||