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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1778 fasta sequence
[TGCAGCGAAGTCCCAGCTACCTGGCGCGTGCATTCATTCATGTGTGGATAGACACCTCCTGAACTCCACCGGGAGAGAGACCGGATCGACCTCGCGCTTTCTCCGTCCAATCGACCATGCCGACGGCGTCGCCAGCCCACGCGGTGTTCTTCCCGTACCCGGTGCAGGGCCACGTCGCGTCGGCGCTGCACCTGGCCAAGCTCCTCCACGCCAGGGGCGGCGTCCGCGTCACCTTCGTCCACTCCGAGCGCAACCGCCGCCGCGTGATCCGCTCCCACGGCGAGGGCGCGCTCGCCGCCGGCGCCCCGGGGTTCTGCTTCGCCGCCGTCCCCGACGGCCTGCCGTCGGATGACGACGACGACGGCCCGTCCGACCCCCGCGATCTGCTCTTCTCCATCGGGGCCTGCGTCCCGCACTTGAAGAAGATCCTCGACGAGGCCGCCGCCTCGGGGGCACCGGCCACCTGCGTCGTCTCCGGCGTCGACCACGTCCTGCTCGCTGCCAGGGAGATGGGCCTCCCGGCCGTCGCGTTCTGGACGACGTCCGCTTGCGGGCTCATGGCGTTCCTCCAATGCAAGGAACTCATCGACAGAGGCATCATTCCACTCAAAGACGCTGAGAAGCTGAGCAATGGCTACCTCGACAGCACGGTGGTCGACTGGGTGCCGGGGATGCCGGCGGACATGCGCCTGCGCGACTTCTTCTCCTTCGTCCGAACCACGGACACCGACGACCCCGTGCTGGCCTTCGTCGTGTCCACCATGGAGTGCCTGCGCACCGCCACGTCCGCCGTCATCCTCAACACGTTCGACGCGCTGGAGGGCGAGGTCGTCGCCGCCATGTCGCGCATCCTGCCGCCCATCTACACGGTCGGCCCGCTCCCTCAGCTCACCGCCGCATCACACGTCGTCGCTTCCGGCGCCGACCCGCCAGACACGCCGGCCCTGAGCGCCGCCAGCCTCTGCCCGGAGGACGGTGGGTGCCTCGAGTGGCTCGGCCGCAAGCGCCCGTGCTCCGTCCTGTACGTCAACTTCGGCAGCATCGTGTACTTGACGAGCACACAGCTCGTGGAGCTAGCATGGGGGCTGGCCGACAGCGGCCACGACTTCCTGTGGGTGATCAGAGACGACCAAGCTAAGGTCACCGGCGGCGACGGCCCCACCGGCGTGCTACCAGCCGAGTTCGTGGAGAAGACGAAGGGGAAGGGTTACTTGACGAGCTGGTGCCCGCAGGAGGCGGTGCTCCGGCACGACGCCATCGGCGCGTTCCTGACGCACTGCGGGTGGAACTCGGTACTCGAGGGCATCTCCAATGGCGTACCCATGCTGTGCTACCCGATGGCCGCCGATCAGCAGACAAACTGCCGGTACGCTTGCACGGAGTGGCGCGTCGGTGTGGAGGTCGGCGACGACATCGAGAGGGAAGAGGTGGCGAGGATGGTGAGGGAGGTGATGGAAGAGGAGATCAAAGGCAAGGAGGTGAGGCAGCGTGCCACGGAATGGAAGGAAAGGGCAGCCATGGCTGTGGTGCCTAGTGGAACCTCATGGGTCAACTTAGATAGGATGGTTAATGAGGTCTTTTCTCCCGGTAACAATATGTAAAATGTCGAGATTTGCTGTTGTTTCTAAATGCTTTCCATGTCATATAAATTTAAATAAGGACGATATGTGTAGGGGGCACATAATATGCGCTCAGTCGTGCGGGGGCACGCCCCACGCGGTTTCCTCCTCTAGTCTCTTATGTATATATTTATATATGTATGTATACGTTTTTTTTAC]
[+] EMBL AK071953 [TGCAGCGAAGTCCCAGCTACCTGGCGCGTGCATTCATTCATGTGTGGATAGACACCTCCTGAACTCCACCGGGAGAGAGACCGGATCGACCTCGCGCTTTCTCCGTCCAATCGACCATGCCGACGGCGTCGCCAGCCCACGCGGTGTTCTTCCCGTACCCGGTGCAGGGCCACGTCGCGTCGGCGCTGCACCTGGCCAAGCTCCTCCACGCCAGGGGCGGCGTCCGCGTCACCTTCGTCCACTCCGAGCGCAACCGCCGCCGCGTGATCCGCTCCCACGGCGAGGGCGCGCTCGCCGCCGGCGCCCCGGGGTTCTGCTTCGCCGCCGTCCCCGACGGCCTGCCGTCGGATGACGACGACGACGGCCCGTCCGACCCCCGCGATCTGCTCTTCTCCATCGGGGCCTGCGTCCCGCACTTGAAGAAGATCCTCGACGAGGCCGCCGCCTCGGGGGCACCGGCCACCTGCGTCGTCTCCGGCGTCGACCACGTCCTGCTCGCTGCCAGGGAGATGGGCCTCCCGGCCGTCGCGTTCTGGACGACGTCCGCTTGCGGGCTCATGGCGTTCCTCCAATGCAAGGAACTCATCGACAGAGGCATCATTCCACTCAAAGACGCTGAGAAGCTGAGCAATGGCTACCTCGACAGCACGGTGGTCGACTGGGTGCCGGGGATGCCGGCGGACATGCGCCTGCGCGACTTCTTCTCCTTCGTCCGAACCACGGACACCGACGACCCCGTGCTGGCCTTCGTCGTGTCCACCATGGAGTGCCTGCGCACCGCCACGTCCGCCGTCATCCTCAACACGTTCGACGCGCTGGAGGGCGAGGTCGTCGCCGCCATGTCGCGCATCCTGCCGCCCATCTACACGGTCGGCCCGCTCCCTCAGCTCACCGCCGCATCACACGTCGTCGCTTCCGGCGCCGACCCGCCAGACACGCCGGCCCTGAGCGCCGCCAGCCTCTGCCCGGAGGACGGTGGGTGCCTCGAGTGGCTCGGCCGCAAGCGCCCGTGCTCCGTCCTGTACGTCAACTTCGGCAGCATCGTGTACTTGACGAGCACACAGCTCGTGGAGCTAGCATGGGGGCTGGCCGACAGCGGCCACGACTTCCTGTGGGTGATCAGAGACGACCAAGCTAAGGTCACCGGCGGCGACGGCCCCACCGGCGTGCTACCAGCCGAGTTCGTGGAGAAGACGAAGGGGAAGGGTTACTTGACGAGCTGGTGCCCGCAGGAGGCGGTGCTCCGGCACGACGCCATCGGCGCGTTCCTGACGCACTGCGGGTGGAACTCGGTACTCGAGGGCATCTCCAATGGCGTACCCATGCTGTGCTACCCGATGGCCGCCGATCAGCAGACAAACTGCCGGTACGCTTGCACGGAGTGGCGCGTCGGTGTGGAGGTCGGCGACGACATCGAGAGGGAAGAGGTGGCGAGGATGGTGAGGGAGGTGATGGAAGAGGAGATCAAAGGCAAGGAGGTGAGGCAGCGTGCCACGGAATGGAAGGAAAGGGCAGCCATGGCTGTGGTGCCTAGTGGAACCTCATGGGTCAACTTAGATAGGATGGTTAATGAGGTCTTTTCTCCCGGTAACAATATGTAAAATGTCGAGATTTGCTGTTGTTTCTAAATGCTTTCCATGTCATATAAATTTAAATAAGGACGATATGTGTAGGGGGCACATAATATGCGCTCAGTCGTGCGGGGGCACGCCCCACGCGGTTTCCTCCTCTAGTCTCTTATGTATATATTTATATATGTATGTATA ]
[+] EMBL AK099055 [ ACCTCCTGAACTCCACCGGGAGAGAGACCGGATCGACCTCGCGCTTTCTCCGTCCAATCGACCATGCCGACGGCGTCGCCAGCCCACGCGGTGTTCTTCCCGTACCCGGTGCAGGGCCACGTCGCGTCGGCGCTGCACCTGGCCAAGCTCCTCCACGCCAGGGGCGGCGTCCGCGTCACCTTCGTCCACTCCGAGCGCAACCGCCGCCGCGTGATCCGCTCCCACGGCGAGGGCGCGCTCGCCGCCGGCGCCCCGGGGTTCTGCTTCGCCGCCGTCCCCGACGGCCTGCCGTCGGATGACGACGACGACGGCCCGTCCGACCCCCGCGATCTGCTCTTCTCCATCGGGGCCTGCGTCCCGCACTTGAAGAAGATCCTCGACGAGGCCGCCGCCTCGGGGGCACCGGCCACCTGCGTCGTCTCCGACGTCGACCACGTCCTGCTCGCTGCCAGGGAGATGGGCCTCCCGGCCGTCGCGTTCTGGACGACGTCCGCTTGCGGGCTCATGGCGTTCCTCCAATGCAAGGAACTCATCGACAGAGGCATCATTCCACTCAAAGACGCTGAGAAGCTGAGCAATGGCTACCTCGACAGCACGGTGGTCGACTGGGTGCCGGGGATGCCGGCGGACATGCGCCTGCGCGACTTCTTCTCCTTCGTCCGAACCACGGACACCGACGACCCCGTGCTGGCCTTCGTCGTGTCCACCATGGAGTGCCTGCGCACCGCCACGTCCGCCGTCATCCTCAACACGTTCGACGCGCTGGAGGGCGAGGTCGTCGCCGCCATGTCGCGCATCCTGCCGCCCATCTACACGGTCGGCCCGCTCCCTCAGCTCACCGCCGCATCACACGTCGTCGCTTCCGGCGCCGACCCGCCAGACACGCCGGCCCTGAGCGCCGCCAGCCTCTGCCCGGAGGACGGTGGGTGCCTCGAGTGGCTCGGCCGCAAGCGCCCGTGCTCCGTCCTGTACGTCAACTTCGGCAGCATCGTGTACTTGACGAGCACACAGCTCGTGGAGCTAGCATGGGGGCTGGCCGACAGCGGCCACGACTTCCTGTGGGTGATCAGAGACGACCAAGCTAAGGTCACCGGCGGCGACGGCCCCACCGGCGTGCTACCAGCCGAGTTCGTGGAGAAGACGAAGGGGAAGGGTTACTTGACGAGCTGGTGCCCGCAGGAGGCGGTGCTCCGGCACGACGCCATCGGCGCGTTCCTGACGCACTGCGGGTGGAACTCGGTACTCGAGGGCATCTCCAATGGCGTACCCATGCTGTGCTACCCGATGGCCGCCGATCAGCAGACAAACTGCCGGTACGCTTGCACGGAGTGGCGCGTCGGTGTGGAGGTCGGCGACGACATCGAGAGGGAAGAGGTGGCGAGGATGGTGAGGGAGGTGATGGAAGAGGAGATCAAAGGCAAGGAGGTGAGGCAGCGTGCCACGGAATGGAAGGAAAGGGCAGCCATGGCTGTGGTGCCTAGTGGAACCTCATGGGTCAACTTAGATAGGATGGTTAATGAGGTCTTTTCTCCCGGTAACAATATGTAAAATGTCGAGATTTGCTGTTGTTTCTAAATGCTTTCCATGTCATATAAATTTAAATAAGGACGATATGTGTAGGGGGCACATAATATGCGCTCAGTCGTGCGGGGGCACGCCCCACGCGGTTTCCTCCTCTAGTCTCTTATGTATATATTTATATATGTATGTATA ]
[-] EMBL CB654109 [ CCCGTGCTCCGTCCTGTACGTCAACTTCGGCAGCATCGTGTACTTGACGAGCACACAGCTCGTGGAGCTAGCATGGGGGCTGGCCGACAGCGGCCACGACTTCCTGTGGGTGATCAGAGACGACCAAGCTAAGGTCACCGGCGGCGACGGCCCCACCGGCGTGCTACCAGCCGAGTTCGTGGAGAAGACGAAGGGGAAGGGTTACTTGACGAGCTGGTGCCCGCAGGAGGCGGTGCTCCGGCACGACGCCATCGGCGCGTTCCTGACGCACTGCGGGTGGAACTCGGTACTCGAGGGCATCTCCAATGGCGTACCCATGCTGTGCTACCCGATGGCCGCCGATCAGCAGACAAACTGCCGGTACGCTTGCACGGAGTGGCGCGTCGGTGTGGAGGTCGGCGACGACATCGAGAGGGAAGAGGTGGCGAGGATGGTGAGGGAGGTGATGGAAGAGGAGATCAAAGGCAAGGAGGTGAGGCAGCGTGCCACGGAATGGAAGGAAAGGGCAGCCATGGCTGTGGTGCCTAGTGAAACCTCATGGGTCAACTTAGATAGGATGGTTAATGAGGTCTTTTCTCCCGGTAACAATATGTAAAATGTCGAGATTTGCTGTTGTTTCTAAATGCTTTCCATGTCATATAAATTTAAATAAGGACGATATGTGTAGGGGGCACATAATATGCGCTCAGTCGTGCGGGGGCACGCCCCACGCGGTTTCCTCCTCTAGTCTCTTATGTATATAAGTATATATGTATGTATACGTTTTTTTTAC]
consensusID : consensus_7257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[ATGCCCCCTTTGATAGCCAGCCCACGCGGTGTTCTTCCCGTACCCGGTGCAGGGCCACGTCGCGTCGGCGCTGCACCTGGCCAAGCTCCTCCACGCCAGGGGCGGCGTCCGCGTCACCTTCGTCCACTCCGAGCGCAACCGCCGCCGCGTGATCCGCTCCCACGGCGAGGGCGCGCTCGCCGCCGGCGCCCCGGGGTTCTGCTTCGCCGCCGTCCCCGACGGCCTGCCGTCGGATGACGACGACGACGGCCCGTCCGACCCCCGCGATCTGCTCTTCTCCATCGGGGCCTGCGTCCCGCACTTGAAGAAGATCCTCGACGAGGCCGCCGCCTCGGGGGCACCGGCCACCTGCGTCGTCTCCGACGTCGACCACGTCCTGCTCGCTGCCAGGGAGATGGGCCTCCCGGCCGTCGCGTTCTGGACGACGTCCGCTTGCGGGCTCATGGCGTTCCTCCAATGCAAGGAACTCATCGACAGAGGCATCATTCCACTCAAAGACGCTGAGAAGCTGAGCAATGGCTACCTCGACAGCACGGTGGTCGACTGGGTGC]
[+] EMBL CB654108 [ATGCCCCCTTTGATAGCCAGCCCACGCGGTGTTCTTCCCGTACCCGGTGCAGGGCCACGTCGCGTCGGCGCTGCACCTGGCCAAGCTCCTCCACGCCAGGGGCGGCGTCCGCGTCACCTTCGTCCACTCCGAGCGCAACCGCCGCCGCGTGATCCGCTCCCACGGCGAGGGCGCGCTCGCCGCCGGCGCCCCGGGGTTCTGCTTCGCCGCCGTCCCCGACGGCCTGCCGTCGGATGACGACGACGACGGCCCGTCCGACCCCCGCGATCTGCTCTTCTCCATCGGGGCCTGCGTCCCGCACTTGAAGAAGATCCTCGACGAGGCCGCCGCCTCGGGGGCACCGGCCACCTGCGTCGTCTCCGACGTCGACCACGTCCTGCTCGCTGCCAGGGAGATGGGCCTCCCGGCCGTCGCGTTCTGGACGACGTCCGCTTGCGGGCTCATGGCGTTCCTCCAATGCAAGGAACTCATCGACAGAGGCATCATTCCACTCAAAGACGCTGAGAAGCTGAGCAATGGCTACCTCGACAGCACGGTGGTCGACTGGGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7257#0 TGCAGCGAAGTCCCAGCTACCTGGCGCGTGCATTCATTCATGTGTGGATAGACACCTCCT 60
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 GAACTCCACCGGGAGAGAGACCGGATCGACCTCGCGCTTTCTCCGTCCAATCGACCATGC 120
consensus_7257#1 --------------------------------------------------------ATGC 4
****
consensus_7257#0 CGACGGCG-TCGCCAGCCCACGCGGTGTTCTTCCCGTACCCGGTGCAGGGCCACGTCGCG 179
consensus_7257#1 CCCCTTTGATAGCCAGCCCACGCGGTGTTCTTCCCGTACCCGGTGCAGGGCCACGTCGCG 64
* * * * *************************************************
consensus_7257#0 TCGGCGCTGCACCTGGCCAAGCTCCTCCACGCCAGGGGCGGCGTCCGCGTCACCTTCGTC 239
consensus_7257#1 TCGGCGCTGCACCTGGCCAAGCTCCTCCACGCCAGGGGCGGCGTCCGCGTCACCTTCGTC 124
************************************************************
consensus_7257#0 CACTCCGAGCGCAACCGCCGCCGCGTGATCCGCTCCCACGGCGAGGGCGCGCTCGCCGCC 299
consensus_7257#1 CACTCCGAGCGCAACCGCCGCCGCGTGATCCGCTCCCACGGCGAGGGCGCGCTCGCCGCC 184
************************************************************
consensus_7257#0 GGCGCCCCGGGGTTCTGCTTCGCCGCCGTCCCCGACGGCCTGCCGTCGGATGACGACGAC 359
consensus_7257#1 GGCGCCCCGGGGTTCTGCTTCGCCGCCGTCCCCGACGGCCTGCCGTCGGATGACGACGAC 244
************************************************************
consensus_7257#0 GACGGCCCGTCCGACCCCCGCGATCTGCTCTTCTCCATCGGGGCCTGCGTCCCGCACTTG 419
consensus_7257#1 GACGGCCCGTCCGACCCCCGCGATCTGCTCTTCTCCATCGGGGCCTGCGTCCCGCACTTG 304
************************************************************
consensus_7257#0 AAGAAGATCCTCGACGAGGCCGCCGCCTCGGGGGCACCGGCCACCTGCGTCGTCTCCGGC 479
consensus_7257#1 AAGAAGATCCTCGACGAGGCCGCCGCCTCGGGGGCACCGGCCACCTGCGTCGTCTCCGAC 364
********************************************************** *
consensus_7257#0 GTCGACCACGTCCTGCTCGCTGCCAGGGAGATGGGCCTCCCGGCCGTCGCGTTCTGGACG 539
consensus_7257#1 GTCGACCACGTCCTGCTCGCTGCCAGGGAGATGGGCCTCCCGGCCGTCGCGTTCTGGACG 424
************************************************************
consensus_7257#0 ACGTCCGCTTGCGGGCTCATGGCGTTCCTCCAATGCAAGGAACTCATCGACAGAGGCATC 599
consensus_7257#1 ACGTCCGCTTGCGGGCTCATGGCGTTCCTCCAATGCAAGGAACTCATCGACAGAGGCATC 484
************************************************************
consensus_7257#0 ATTCCACTCAAAGACGCTGAGAAGCTGAGCAATGGCTACCTCGACAGCACGGTGGTCGAC 659
consensus_7257#1 ATTCCACTCAAAGACGCTGAGAAGCTGAGCAATGGCTACCTCGACAGCACGGTGGTCGAC 544
************************************************************
consensus_7257#0 TGGGTGCCGGGGATGCCGGCGGACATGCGCCTGCGCGACTTCTTCTCCTTCGTCCGAACC 719
consensus_7257#1 TGGGTGC----------------------------------------------------- 551
*******
consensus_7257#0 ACGGACACCGACGACCCCGTGCTGGCCTTCGTCGTGTCCACCATGGAGTGCCTGCGCACC 779
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 GCCACGTCCGCCGTCATCCTCAACACGTTCGACGCGCTGGAGGGCGAGGTCGTCGCCGCC 839
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 ATGTCGCGCATCCTGCCGCCCATCTACACGGTCGGCCCGCTCCCTCAGCTCACCGCCGCA 899
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 TCACACGTCGTCGCTTCCGGCGCCGACCCGCCAGACACGCCGGCCCTGAGCGCCGCCAGC 959
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 CTCTGCCCGGAGGACGGTGGGTGCCTCGAGTGGCTCGGCCGCAAGCGCCCGTGCTCCGTC 1019
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 CTGTACGTCAACTTCGGCAGCATCGTGTACTTGACGAGCACACAGCTCGTGGAGCTAGCA 1079
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 TGGGGGCTGGCCGACAGCGGCCACGACTTCCTGTGGGTGATCAGAGACGACCAAGCTAAG 1139
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 GTCACCGGCGGCGACGGCCCCACCGGCGTGCTACCAGCCGAGTTCGTGGAGAAGACGAAG 1199
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 GGGAAGGGTTACTTGACGAGCTGGTGCCCGCAGGAGGCGGTGCTCCGGCACGACGCCATC 1259
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 GGCGCGTTCCTGACGCACTGCGGGTGGAACTCGGTACTCGAGGGCATCTCCAATGGCGTA 1319
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 CCCATGCTGTGCTACCCGATGGCCGCCGATCAGCAGACAAACTGCCGGTACGCTTGCACG 1379
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 GAGTGGCGCGTCGGTGTGGAGGTCGGCGACGACATCGAGAGGGAAGAGGTGGCGAGGATG 1439
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 GTGAGGGAGGTGATGGAAGAGGAGATCAAAGGCAAGGAGGTGAGGCAGCGTGCCACGGAA 1499
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 TGGAAGGAAAGGGCAGCCATGGCTGTGGTGCCTAGTGGAACCTCATGGGTCAACTTAGAT 1559
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 AGGATGGTTAATGAGGTCTTTTCTCCCGGTAACAATATGTAAAATGTCGAGATTTGCTGT 1619
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 TGTTTCTAAATGCTTTCCATGTCATATAAATTTAAATAAGGACGATATGTGTAGGGGGCA 1679
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 CATAATATGCGCTCAGTCGTGCGGGGGCACGCCCCACGCGGTTTCCTCCTCTAGTCTCTT 1739
consensus_7257#1 ------------------------------------------------------------
consensus_7257#0 ATGTATATATTTATATATGTATGTATACGTTTTTTTTAC 1778
consensus_7257#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||