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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1417 fasta sequence
[AGGTTCAGTTTCAGCAAGAGCTAAACTCGATCGGATTCAGACCGCGAAGCTAAGCTTTGCGAAGGAGGATGAAGCCGGCGACGTCGGAGTCCGACATGACGAGCCTCGCGACGTCGTCGCCGTCGCGGTCGCCCAAGGCGGCGGCGGCGGCGTACTACGTCCAGATCAGCCCGTCGCGCGACTCCCACGACGACGACGGCGACAAGTCGCCGTCGACGCAGGCCACGCCGGTGTACAACAACAGCCCGCTCGACTCGCCGTCGCACCACTCCTCCTCCTTCGGCCGCCACTCCAGGGTCTCCTCCGCCAGCCGCTTCTCCGGCAACCTCCGGTCGGCGTCCGGGAGGAGCAGGCTTGGTGGCGGCGGCGGCCGGAGGCGGTTGGGCGCCAAGGGGTGGCGCGACGTCGACGCCATCATCGACGAGGAGGAGGAAGGCGCGTACGACGAGTTTGACGACGACGACGATGGCGGCTATGAGCCATCCAGATGCTGCGTCCTCGCCTTCCGATTCTCGCTTCTTGCTCTAGCCTTCACCCTCGTCTGCCTCATCGTCTGGGGAATCGCTCGCCATTACAAACCTGGAGTTCTTGTCAAGAGCTTGACAGTGGGGAACTTTTATGCCGGAGAAGGTATAGACCGGACCGGGGTGCCGACAAAGCTGGTGACAATGAACTGCTCTCTGCAGATAAATGTTCACAACCCTTCCACGATGTTCGGCATTCATGTCTCTTCGACATCGATTCAGATCTTGTTCTCGCAAATCGCGATCGCCAACGGTCAGTTGGAGAAGTTCTACCAGCCAAGGTCAAGCCATCATGTCGCCTCGGCGATCGTTCATGGCGAG-AAGATCCCTCTCTATGGAGCTGGAGAAACATTCGCCTTGTCGAATGCTGGAGGTGCTGTGCCACTGACTCTAGACTTGGTG-GTAAGAGCTAGAGGGTATGTGATTGGTAAGCTTGTGAGGGTGACACACACAAAGCGTGTGAAATGCCCGGTGGTTATCGATTCCGGTAGCTCCAAGCCGATTAGGTTTATCCAGAGTGCTTGTAGTTACACCTGATGCAGTGCCTTGGCCTTCTATAATCTCAATAAGGGCTGTGATCATGTACTCCCTCCGTATCATAATATAAGGGATTTTAAGTTTTTGCTTGTAACGTTTGACCCACTCGTCTTATTCAAATTTTTTTGAAATTATTAATTATTTTATTTGTGACTTACTTTATTATCTAAAATACTTTAAGCATAACTTTTCATTTTTTATATTTGCAAAAAAAATTTGAATAAGACTAGTGGTCAAACGTTACATGTAAAAAATCAAAATACCTTATATTGTGGGACAGAGGGAGTAGATATTTAGGTCCTTCATGACATGAGCCCACAGAAAATAAGCCGTAGTTTTATCTTCCAAAAAAAAAA]
[+] EMBL AK119627 [AGGTTCAGTTTCAGCAAGAGCTAAACTCGATCGGATTCAGACCGCGAAGCTAAGCTTTGCGAAGGAGGATGAAGCCGGCGACGTCGGAGTCCGACATGACGAGCCTCGCGACGTCGTCGCCGTCGCGGTCGCCCAAGGCGGCGGCGGCGGCGTACTACGTCCAGATCAGCCCGTCGCGCGACTCCCACGACGACGACGGCGACAAGTCGCCGTCGACGCAGGCCACGCCGGTGTACAACAACAGCCCGCTCGACTCGCCGTCGCACCACTCCTCCTCCTTCGGCCGCCACTCCAGGGTCTCCTCCGCCAGCCGCTTCTCCGGCAACCTCCGGTCGGCGTCCGGGAGGAGCAGGCTTGGTGGCGGCGGCGGCCGGAGGCGGTTGGGCGCCAAGGGGTGGCGCGACGTCGACGCCATCATCGACGAGGAGGAGGAAGGCGCGTACGACGAGTTTGACGACGACGACGATGGCGGCTATGAGCCATCCAGATGCTGCGTCCTCGCCTTCCGATTCTCGCTTCTTGCTCTAGCCTTCACCCTCGTCTGCCTCATCGTCTGGGGAATCGCTCGCCATTACAAACCTGGAGTTCTTGTCAAGAGCTTGACAGTGGGGAACTTTTATGCCGGAGAAGGTATAGACCGGACCGGGGTGCCGACAAAGCTGGTGACAATGAACTGCTCTCTGCAGATAAATGTTCACAACCCTTCCACGATGTTCGGCATTCATGTCTCTTCGACATCGATTCAGATCTTGTTCTCGCAAATCGCGATCGCCAACGGTCAGTTGGAGAAGTTCTACCAGCCAAGGTCAAGCCATCATGTCGCCTCGGCGATCGTTCATGGCGAG AAGATCCCTCTCTATGGAGCTGGAGAAACATTCGCCTTGTCGAATGCTGGAGGTGCTGTGCCACTGACTCTAGACTTGGTG GTAAGAGCTAGAGGGTATGTGATTGGTAAGCTTGTGAGGGTGACACACACAAAGCGTGTGAAATGCCCGGTGGTTATCGATTCCGGTAGCTCCAAGCCGATTAGGTTTATCCAGAGTGCTTGTAGTTACACCTGATGCAGTGCCTTGGCCTTCTATAATCTCAATAAGGGCTGTGATCATGTACTCCCTCCGTATCATAATATAAGGGATTTTA ]
[+] EMBL BI799499 [ tcattCCTC GCGATCGTTCAT GCGAGAAAGATCCCTCTCTATGGAGCTGGAGAAACATTCGCCTTGTCGAATGCTGGAGGTGCTGTGCCACTGACTCTAGACTTGGTGTGTAAGAGCTAGAGGGTATGTGATTGGTAAGCTTGTGAGGGTGACACACACAAAGCGTGTGAAATGCCCGGTGGTTATCGATTCCGGTAGCTCCAAGCCGATTAGGTTTATCCAGAGTGCTTGTAGTTACACCTGATGCAGTGCCTTGGCCTTCTATAATCTCCATAAGGGCTGTGATCATGTACTCCCTCCGTCTCATAATATAAGGGATTTTAAGTTTTTGCTTGTAACGTTTGACCCACTCGTCTTATTCAAATTTTTTTGAAATTATTAATTATTTTATTTGTGACTTACTTTATTATCTAAAATACTTTAAGCATAACTTTTCATTTTTTATATTTGCAAAAAAAATTTGAATAAGACTAGTGGTCAAACGTTACATGTAAAAAATCAAAATACCTTATATTGTGGGACAGAGGGAGTAGATATTTAGGTCCTTCATGACATGAGCCCACAGAAAATAAGCCGTAGTTTTATCTTCCAAAAAAAAAA]
[+] EMBL AU222558 [ CTTGTCGAATGCTGGAGGTGCTGTGCCACTGACTCTAGACTTGGTG GTAAGAGCTAGAGGGTATGTGATTGGTAAGCTTGTGAGGGTGACACACACAAAGCGTGTGAAATGCCCGGTGGTTATCGATTCCGGTAGCTCCAAGCCGATTAGGTTTATCCAGAGTGCTTGTAGTTACACCTGATGCAGTGCCTTGGCCTTCTATAATCTCAATAAGGGCTGTGATCATGTACTCCCTCCGTATCATAATATAAGGGATTTTAAGTTTTTGCTaaaaaaa ]
consensusID : consensus_7258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[GGCGCCCAANGGGTGGCGCGACGTCGACGCCATCATCGACGANGANGAGGAAGGCGCGTACGACGAGTTTGACGACGACGACGATGGCGCTATGAGCCATCCAGATGCTGCGTCCTCGCCTTCCGATTCTCGCTTCTTGCTCTAGCCTTCACCCTCGTCTGCCTCATCGTCTGGGGAATCGCTCGCCATTACAAACCTGGAGTTCTTGTCAAGGTATATTATCACTGAATTCGTATCCAAATCACACAGGTTCATAATGAGTTTGTGATGGTTTTTTGAACTTGTTAAATTATTACTGATCTTTTGTCTGAAAAAAAAAAAAA]
[+] EMBL AU086028 [GGCGCCCAANGGGTGGCGCGACGTCGACGCCATCATCGACGANGANGAGGAAGGCGCGTACGACGAGTTTGACGACGACGACGATGGCGCTATGAGCCATCCAGATGCTGCGTCCTCGCCTTCCGATTCTCGCTTCTTGCTCTAGCCTTCACCCTCGTCTGCCTCATCGTCTGGGGAATCGCTCGCCATTACAAACCTGGAGTTCTTGTCAAGGTATATTATCACTGAATTCGTATCCAAATCACACAGGTTCATAATGAGTTTGTGATGGTTTTTTGAACTTGTTAAATTATTACTGATCTTTTGTCTGAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7258#0 AGGTTCAGTTTCAGCAAGAGCTAAACTCGATCGGATTCAGACCGCGAAGCTAAGCTTTGC 60
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 GAAGGAGGATGAAGCCGGCGACGTCGGAGTCCGACATGACGAGCCTCGCGACGTCGTCGC 120
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 CGTCGCGGTCGCCCAAGGCGGCGGCGGCGGCGTACTACGTCCAGATCAGCCCGTCGCGCG 180
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 ACTCCCACGACGACGACGGCGACAAGTCGCCGTCGACGCAGGCCACGCCGGTGTACAACA 240
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 ACAGCCCGCTCGACTCGCCGTCGCACCACTCCTCCTCCTTCGGCCGCCACTCCAGGGTCT 300
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 CCTCCGCCAGCCGCTTCTCCGGCAACCTCCGGTCGGCGTCCGGGAGGAGCAGGCTTGGTG 360
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 GCGGCGGCGGCCGGAGGCGGTTGGGCGCC-AAGGGGTGGCGCGACGTCGACGCCATCATC 419
consensus_7258#1 -----------------------GGCGCCCAANGGGTGGCGCGACGTCGACGCCATCATC 37
****** ** ***************************
consensus_7258#0 GACGAGGAGGAGGAAGGCGCGTACGACGAGTTTGACGACGACGACGATGGCGGCTATGAG 479
consensus_7258#1 GACGANGANGAGGAAGGCGCGTACGACGAGTTTGACGACGACGACGATGGCG-CTATGAG 96
***** ** ******************************************* *******
consensus_7258#0 CCATCCAGATGCTGCGTCCTCGCCTTCCGATTCTCGCTTCTTGCTCTAGCCTTCACCCTC 539
consensus_7258#1 CCATCCAGATGCTGCGTCCTCGCCTTCCGATTCTCGCTTCTTGCTCTAGCCTTCACCCTC 156
************************************************************
consensus_7258#0 GTCTGCCTCATCGTCTGGGGAATCGCTCGCCATTACAAACCTGGAGTTCTTGTCAAGAGC 599
consensus_7258#1 GTCTGCCTCATCGTCTGGGGAATCGCTCGCCATTACAAACCTGGAGTTCTTGTCAAG-GT 215
********************************************************* *
consensus_7258#0 TTGACAGTGGGGAACTTTTATGCCGGAGAAGGTATAGACCGGACCGGGGTGCCGACAAAG 659
consensus_7258#1 ATATTATCACTGAATTCGTATCC------------AAATCACAC--AGGTTCATAATGAG 261
* * *** * *** * * * * ** *** * * **
consensus_7258#0 CTGGTGACAATGAACTGCTCTCTGCAGATAAATGTTCACAACCCTTCCACGATGTTCGGC 719
consensus_7258#1 TTTGTGATGGTTTTTTGAACTTGTTAAATTATTACTGATCTTTTGTCTGAAAAAAAAAAA 321
* **** * ** ** * ** * * * * ** *
consensus_7258#0 ATTCATGTCTCTTCGACATCGATTCAGATCTTGTTCTCGCAAATCGCGATCGCCAACGGT 779
consensus_7258#1 AA---------------------------------------------------------- 323
*
consensus_7258#0 CAGTTGGAGAAGTTCTACCAGCCAAGGTCAAGCCATCATGTCGCCTCGGCGATCGTTCAT 839
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 GGCGAGAAGATCCCTCTCTATGGAGCTGGAGAAACATTCGCCTTGTCGAATGCTGGAGGT 899
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 GCTGTGCCACTGACTCTAGACTTGGTGGTAAGAGCTAGAGGGTATGTGATTGGTAAGCTT 959
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 GTGAGGGTGACACACACAAAGCGTGTGAAATGCCCGGTGGTTATCGATTCCGGTAGCTCC 1019
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 AAGCCGATTAGGTTTATCCAGAGTGCTTGTAGTTACACCTGATGCAGTGCCTTGGCCTTC 1079
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 TATAATCTCAATAAGGGCTGTGATCATGTACTCCCTCCGTATCATAATATAAGGGATTTT 1139
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 AAGTTTTTGCTTGTAACGTTTGACCCACTCGTCTTATTCAAATTTTTTTGAAATTATTAA 1199
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 TTATTTTATTTGTGACTTACTTTATTATCTAAAATACTTTAAGCATAACTTTTCATTTTT 1259
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 TATATTTGCAAAAAAAATTTGAATAAGACTAGTGGTCAAACGTTACATGTAAAAAATCAA 1319
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 AATACCTTATATTGTGGGACAGAGGGAGTAGATATTTAGGTCCTTCATGACATGAGCCCA 1379
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 CAGAAAATAAGCCGTAGTTTTATCTTCCAAAAAAAAAA 1417
consensus_7258#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||