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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1893 fasta sequence
[CGTGCACATGGGAAGAACACATATCATCATTGAGAGATTTAAAGTTTGGAGGATCTGAGTCAATGAGGTCAACACAACAAGATTTATACTCTGAACTTGAATATGAACAAGATGTTGGAGAAGATCCTGAGGAGAGACAAATGGTTTCTCTAAATAGACTATTTGAAAAACACCGGGATGTTTCTTTAAATAGACTTCTGGAAAAACACCGGGATGAAGAGATGCAAGAATCTTGCTCTACTGATAAAGAAGGCGAAGAAGATGAGAAGATTGATACTCTATCATTTGAACAATCCATACTAAAGATAACTAGCATGAAATTAGGGAATCTTTGGAACAATCCTAACCAGCTCTCAGAGGAGATGGTTCGTTGCATGAGAAACATTTTCCTCCGTCTATCTGAATCCTCGAAGATGTTACCAAAGGAATCTTCTGATTGTTCATCTTCCTCAGCAGAACGTCTTTCTGGTTCTACACTGGCATCCTTCTCAGATTCATCCATCATTCCCTCAATGCTACGAAGTCCTTCAGTTGACTCGAATCGCAATGATGAGATGACAACTGAAGCCAGCAACTTTGATCCATATAAAGTTAATGGGAAGGAAAGCCGAAGAGATATTGGAAATTATCATTCAGCAGCTGAAGTATCTTGGATGTCTGTTGGAAAGGAGCAACTTGAATATGCATCTGAAGCTCTAAAAAAATTCAGATTTCTTGTGGAACAGCTATCAAAGGTTAACCCTAATAGTATGAACTGTGATGAGCGGCTAGCCTTTTGGATTAATTTGTACAATGCACTGATTATGCATGCATATCTAGCATATGGAGTTCCACGAAATGATATCAAGCTTTTTTCCCTAATGCAAAAGGCCTGTTACACAGTTGGTGGTCAGTCTTTCAGTGCTGCTGAAATAGAATTTGTGATTCTAAAGATGAAGACTCCAGTGCATCGGCCCCAACTTTCCTTGATGCTAGCTCTTAACAAGTTCAAAATACTGAGGAGCACAAGAAATACTCGATTGATGGGACAGAACCCCTTGTGTTGTTTGGACTCAGCTGCGGAATGTTCTCTTCACCCGCCGTGAGGATCTTCTCTGCAGCAAATGTCCGTCAGGAGCTTCAGGAATCTTTGAGAGACTATGTCCAAGCGTCTGTTGGTATAAGCGACCGAGGGAAACTGCTAATCCCAAAGTTACTGCAGAGCTATGCCAAGGGGAATGTCGAAGATTCTTTGCTCGCTGACTGGATCTGCCATCACCTTACACCTGATCAAGTTGCAGTCATCCGAGATTCTTCTTCACAGCGGAAGCAGCGGCTTCTTGGAGCACGCAGTTTTACTGTTGTTGCATTCGACTCAAAATTCCGGTATCTGTTCTTGCCTGACAGCAGTGGCTCCCAGAAGCCAGAACCCAAACGGACTTCGTGAGCTGTGTTCAGAAAACACATGCTATGAACAAGTATGTTTGGTCCTAGAACCATTTTCTTGCATACTGGACAATGCAGTAGCTAGTTGTATATGATGTAAATTTTTGGAGGAAGAGTATATGATGCAACAAAGATGAGAAGCTGGAGGGCGATACAAAGAGCTCCAGTAAGGATACAGGATAGTTCATATGTATGATCAGATTATCTCAGCTGAATTGACGATGAAGGTTCATCTGGATCTCATTTTGTTCTGTTACT-GTCTTTCCATAATGAAGATAACCTTTT-GTAATTTTTGGTTTCGACATACCTTTTTTTGGGGGTAGAGTTCTTGATCTTGGTCAATTGATTTGTAAGTTGTGCTCTAAATA------ATGTATAGTGCTTTTACCTCTTTATAATAATGTGAGTTACTTTCTCACTGNCTGGCTGGTACTGCTGGAATAAGTAATCATTCTATGAGATGCAACCTTT]
[+] EMBL AK064473 [CGTGCACATGGGAAGAACACATATCATCATTGAGAGATTTAAAGTTTGGAGGATCTGAGTCAATGAGGTCAACACAACAAGATTTATACTCTGAACTTGAATATGAACAAGATGTTGGAGAAGATCCTGAGGAGAGACAAATGGTTTCTCTAAATAGACTATTTGAAAAACACCGGGATGTTTCTTTAAATAGACTTCTGGAAAAACACCGGGATGAAGAGATGCAAGAATCTTGCTCTACTGATAAAGAAGGCGAAGAAGATGAGAAGATTGATACTCTATCATTTGAACAATCCATACTAAAGATAACTAGCATGAAATTAGGGAATCTTTGGAACAATCCTAACCAGCTCTCAGAGGAGATGGTTCGTTGCATGAGAAACATTTTCCTCCGTCTATCTGAATCCTCGAAGATGTTACCAAAGGAATCTTCTGATTGTTCATCTTCCTCAGCAGAACGTCTTTCTGGTTCTACACTGGCATCCTTCTCAGATTCATCCATCATTCCCTCAATGCTACGAAGTCCTTCAGTTGACTCGAATCGCAATGATGAGATGACAACTGAAGCCAGCAACTTTGATCCATATAAAGTTAATGGGAAGGAAAGCCGAAGAGATATTGGAAATTATCATTCAGCAGCTGAAGTATCTTGGATGTCTGTTGGAAAGGAGCAACTTGAATATGCATCTGAAGCTCTAAAAAAATTCAGATTTCTTGTGGAACAGCTATCAAAGGTTAACCCTAATAGTATGAACTGTGATGAGCGGCTAGCCTTTTGGATTAATTTGTACAATGCACTGATTATGCATGCATATCTAGCATATGGAGTTCCACGAAATGATATCAAGCTTTTTTCCCTAATGCAAAAGGCCTGTTACACAGTTGGTGGTCAGTCTTTCAGTGCTGCTGAAATAGAATTTGTGATTCTAAAGATGAAGACTCCAGTGCATCGGCCCCAACTTTCCTTGATGCTAGCTCTTAACAAGTTCAAAATACTGAGGAGCACAAGAAATACTCGATTGATGGGACAGAACCCCTTGTGTTGTTTGGACTCAGCTGCGGAATGTTCTCTTCACCCGCCGTGAGGATCTTCTCTGCAGCAAATGTCCGTCAGGAGCTTCAGGAATCTTTGAGAGACTATGTCCAAGCGTCTGTTGGTATAAGCGACCGAGGGAAACTGCTAATCCCAAAGTTACTGCAGAGCTATGCCAAGGGGAATGTCGAAGATTCTTTGCTCGCTGACTGGATCTGCCATCACCTTACACCTGATCAAGTTGCAGTCATCCGAGATTCTTCTTCACAGCGGAAGCAGCGGCTTCTTGGAGCACGCAGTTTTACTGTTGTTGCATTCGACTCAAAATTCCGCTATCTGTTCTTGCCTGACAGCAGTGGCTCCCAGAAGCCAGAACCCAACCGGACTTCGTGAGCTGTGTTCAGAAAACACATGCTATGAGCGAGTATGTTTGGTCCTAGAACCA TTTCTTGCATACTGGACAATGGAGTAGCTAGTTGTATATGATGTAAATTTTTGGAGGAAGAGTATATGATGCAACAAAGATGAGAAGCTGGAGGGTGATACAAAGAGCTCCAGTAAGGATACAGGATAGTTCATATGTATGATCAGATTATCTCAGCTGAATTGGCGATGAAGGTTCATCTGGATCTCATTTTGTTCTGTTACT GTCTTTCCATAATGAAGATAACCTTTT GTAATTTTTGTTTTCGACATACCTTTTTTTGGGGGTATAGTTCTTGATCTTGGTCAATTGATTTGTAAGTTGTGCTCTAAATA ATGTATAGTGCTTTTACCTCTTTATAATAATGTGAGTT ]
[+] EMBL CA767506 [ aggggGTGTTGTTTGGACTCAGCTGCGGAATGTTCCCTTCACCCGCCGTGAGGATCTTCTCTGCAGCAAATGTCCGTCAGGAGCTTCAGGAATCTTTGAGAGACTNTGTCCAAGCGTCTGTTGGTATAAGCGACCGAGGGAAACTGCTAATCCCAAAGTTACTGCAGAGCTATGCCAAGGGGAATGTCGAAGATTCTTTGCTCGCTGACTGGATCTGCCATCACCTTACACCTGATCAAGTTGCAGTCATCCGAGATTCTTCTTCACAGCGGAAGCAGCGGCTTCTTGGAGCACGCAGTTTTACTGTTGTTGCATTCGACTCAAAATTCCGGTATCTGTTCTTGCCTGACAGCAGTGGCTCCCAGAAGCCAGAACCCAAACGGACTTCGTGAGCTGTGTTCAGAAAACACATGCTATGAACAAGTATGTTTGGTCCTAGAACCATTTTCTTGCATACTGGACAATGCAGTAGCTAGTTGTATATGATGTAAATTTTTGGAGGAAGAGTATATGATGCAACAAAGATGAGAAGCTGGAGGGCGATACAAAGAGCTCCAGTAAGGATACAGGATAGTTCATATGTATGATCAGATTATCTCAGCTGAATTGACGATGAAGGTTCATCTGGATCTCATTTTGGTCTGGTACTGGCCTTTCCATAATGAAAATAACCTTTTGGTATTTTTTGGTTTCGACATACCTTTTTTTGGGGNTAGAGn ]
[+] EMBL CB096411 [ AGATTCTTTGCTCGCTGACTGGATCTGCCATCACCTTACACCTGATCAAGTTGCAGTCATCCGAGATTCTTCTTCACAGCGGAAGCAGCGGCTTCTTGGAGCACGCAGTTTTACTGTTGTTGCATTCGACTCAAAATTCCGGTATCTGTTCTTGCCTGACAGCAGTGGCTCCCAGAAGCCAGAACCCAAACGGACTTCGTGAGCTGTGTTCAGAAAACACATGCTATGAACAAGTATGTTTGGTCCTAGAACCATTTTCTTGCATACTGGACAATGCAGTAGCTAGTTGTATATGATGTAAATTTTTGGAGGAAGAGTATATGATGCAACAAAGATGAGAAGCTGGAGGGCGATACAAAGAGCTCCAGTAAGGATACAGGATAGTTCATATGTATGATCAGATTATCTCAGCTGAATTGACGATGAAGGTTCATCTGGATCTCATTTTGTTCTGTTACT GTCTTTCCATAATGAAGATAACCTTTT GTTATTTTTGNTTTCGACATACCTTTTTTTGGGGTTAGAGTTCTTGATCTTGGTCAATTGATTTGTAAGNTGTGCTCAAAATAAGGAAGATGTATAGNGCTTTTACCTCTTTATAATAATGNGAGNTACTTTCTCACTGNCTGGCTGGTACTGCTGGAATAAGTAATCATTCTATGAGATGCAACCTTT]
consensusID : consensus_7262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[GCTGCGGAATGTCTTCTTCACCCGCCGTGAGGATCTTCTCTGCAGCAAATGTCCGTCAGGAGCTTCAGGAATCTNTGAGAGACTATGTCCAAGCGTCTGTTGGTATAAGCGACCGAGGGAAACTGCTAATCCCAAAGTTACTGCAGAGCTATGCCAAGGGGAATGTCGAAGATTCTTTGCTCGCTGACTGGATCTGCCATCACCTTACACCTGATCAAGTTGCAGTCATCCGAGATTCTTCTTCACAGCGGAAGCAGCGGCTTCTTGGAGCACGCAGTTTTACTGTTGTTGCATTCGACTCAAAATTCCGGTATCTGTTCTTGCCTGACAGCAGTGGCTCCCAGAAGCCAGAACCCAAACGGACTTCGTGAGCTGTGTTCAGAAAACACATGCTATGAACAAGTATGTTTGGTCCTAGAACCATTTTCTTGCATACTGGACAATGCAGTAGCTAGTTGTATATGATGTAAATTTTTGGAGGAAGAGTATATGATGCAACAAAGATGAGAAGCTGGAGGGCGATACAAAGAGCTCCAGTAAGGATACAGGATAGTTCATATGTATGATCAGATTATCTCAGCTGAATTGACGATGAAGGTTCATCTGGATCTCATTTTGTTCTGTTACTGTCTTTCCATAATGAAGATAACCTTTTGTTATTTTTGTTTTCGAAAAAAAAAAA]
[-] EMBL CA759987 [GCTGCGGAATGTCTTCTTCACCCGCCGTGAGGATCTTCTCTGCAGCAAATGTCCGTCAGGAGCTTCAGGAATCTNTGAGAGACTATGTCCAAGCGTCTGTTGGTATAAGCGACCGAGGGAAACTGCTAATCCCAAAGTTACTGCAGAGCTATGCCAAGGGGAATGTCGAAGATTCTTTGCTCGCTGACTGGATCTGCCATCACCTTACACCTGATCAAGTTGCAGTCATCCGAGATTCTTCTTCACAGCGGAAGCAGCGGCTTCTTGGAGCACGCAGTTTTACTGTTGTTGCATTCGACTCAAAATTCCGGTATCTGTTCTTGCCTGACAGCAGTGGCTCCCAGAAGCCAGAACCCAAACGGACTTCGTGAGCTGTGTTCAGAAAACACATGCTATGAACAAGTATGTTTGGTCCTAGAACCATTTTCTTGCATACTGGACAATGCAGTAGCTAGTTGTATATGATGTAAATTTTTGGAGGAAGAGTATATGATGCAACAAAGATGAGAAGCTGGAGGGCGATACAAAGAGCTCCAGTAAGGATACAGGATAGTTCATATGTATGATCAGATTATCTCAGCTGAATTGACGATGAAGGTTCATCTGGATCTCATTTTGTTCTGTTACTGTCTTTCCATAATGAAGATAACCTTTTGTTATTTTTGTTTTCGAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7262#0 CGTGCACATGGGAAGAACACATATCATCATTGAGAGATTTAAAGTTTGGAGGATCTGAGT 60
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 CAATGAGGTCAACACAACAAGATTTATACTCTGAACTTGAATATGAACAAGATGTTGGAG 120
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 AAGATCCTGAGGAGAGACAAATGGTTTCTCTAAATAGACTATTTGAAAAACACCGGGATG 180
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 TTTCTTTAAATAGACTTCTGGAAAAACACCGGGATGAAGAGATGCAAGAATCTTGCTCTA 240
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 CTGATAAAGAAGGCGAAGAAGATGAGAAGATTGATACTCTATCATTTGAACAATCCATAC 300
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 TAAAGATAACTAGCATGAAATTAGGGAATCTTTGGAACAATCCTAACCAGCTCTCAGAGG 360
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 AGATGGTTCGTTGCATGAGAAACATTTTCCTCCGTCTATCTGAATCCTCGAAGATGTTAC 420
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 CAAAGGAATCTTCTGATTGTTCATCTTCCTCAGCAGAACGTCTTTCTGGTTCTACACTGG 480
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 CATCCTTCTCAGATTCATCCATCATTCCCTCAATGCTACGAAGTCCTTCAGTTGACTCGA 540
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 ATCGCAATGATGAGATGACAACTGAAGCCAGCAACTTTGATCCATATAAAGTTAATGGGA 600
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 AGGAAAGCCGAAGAGATATTGGAAATTATCATTCAGCAGCTGAAGTATCTTGGATGTCTG 660
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 TTGGAAAGGAGCAACTTGAATATGCATCTGAAGCTCTAAAAAAATTCAGATTTCTTGTGG 720
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 AACAGCTATCAAAGGTTAACCCTAATAGTATGAACTGTGATGAGCGGCTAGCCTTTTGGA 780
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 TTAATTTGTACAATGCACTGATTATGCATGCATATCTAGCATATGGAGTTCCACGAAATG 840
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 ATATCAAGCTTTTTTCCCTAATGCAAAAGGCCTGTTACACAGTTGGTGGTCAGTCTTTCA 900
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 GTGCTGCTGAAATAGAATTTGTGATTCTAAAGATGAAGACTCCAGTGCATCGGCCCCAAC 960
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 TTTCCTTGATGCTAGCTCTTAACAAGTTCAAAATACTGAGGAGCACAAGAAATACTCGAT 1020
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 TGATGGGACAGAACCCCTTGTGTTGTTTGGACTCAGCTGCGGAATGTTCTCTTCACCCGC 1080
consensus_7262#1 -----------------------------------GCTGCGGAATGTCTTCTTCACCCGC 25
************ ***********
consensus_7262#0 CGTGAGGATCTTCTCTGCAGCAAATGTCCGTCAGGAGCTTCAGGAATCTTTGAGAGACTA 1140
consensus_7262#1 CGTGAGGATCTTCTCTGCAGCAAATGTCCGTCAGGAGCTTCAGGAATCTNTGAGAGACTA 85
************************************************* **********
consensus_7262#0 TGTCCAAGCGTCTGTTGGTATAAGCGACCGAGGGAAACTGCTAATCCCAAAGTTACTGCA 1200
consensus_7262#1 TGTCCAAGCGTCTGTTGGTATAAGCGACCGAGGGAAACTGCTAATCCCAAAGTTACTGCA 145
************************************************************
consensus_7262#0 GAGCTATGCCAAGGGGAATGTCGAAGATTCTTTGCTCGCTGACTGGATCTGCCATCACCT 1260
consensus_7262#1 GAGCTATGCCAAGGGGAATGTCGAAGATTCTTTGCTCGCTGACTGGATCTGCCATCACCT 205
************************************************************
consensus_7262#0 TACACCTGATCAAGTTGCAGTCATCCGAGATTCTTCTTCACAGCGGAAGCAGCGGCTTCT 1320
consensus_7262#1 TACACCTGATCAAGTTGCAGTCATCCGAGATTCTTCTTCACAGCGGAAGCAGCGGCTTCT 265
************************************************************
consensus_7262#0 TGGAGCACGCAGTTTTACTGTTGTTGCATTCGACTCAAAATTCCGGTATCTGTTCTTGCC 1380
consensus_7262#1 TGGAGCACGCAGTTTTACTGTTGTTGCATTCGACTCAAAATTCCGGTATCTGTTCTTGCC 325
************************************************************
consensus_7262#0 TGACAGCAGTGGCTCCCAGAAGCCAGAACCCAAACGGACTTCGTGAGCTGTGTTCAGAAA 1440
consensus_7262#1 TGACAGCAGTGGCTCCCAGAAGCCAGAACCCAAACGGACTTCGTGAGCTGTGTTCAGAAA 385
************************************************************
consensus_7262#0 ACACATGCTATGAACAAGTATGTTTGGTCCTAGAACCATTTTCTTGCATACTGGACAATG 1500
consensus_7262#1 ACACATGCTATGAACAAGTATGTTTGGTCCTAGAACCATTTTCTTGCATACTGGACAATG 445
************************************************************
consensus_7262#0 CAGTAGCTAGTTGTATATGATGTAAATTTTTGGAGGAAGAGTATATGATGCAACAAAGAT 1560
consensus_7262#1 CAGTAGCTAGTTGTATATGATGTAAATTTTTGGAGGAAGAGTATATGATGCAACAAAGAT 505
************************************************************
consensus_7262#0 GAGAAGCTGGAGGGCGATACAAAGAGCTCCAGTAAGGATACAGGATAGTTCATATGTATG 1620
consensus_7262#1 GAGAAGCTGGAGGGCGATACAAAGAGCTCCAGTAAGGATACAGGATAGTTCATATGTATG 565
************************************************************
consensus_7262#0 ATCAGATTATCTCAGCTGAATTGACGATGAAGGTTCATCTGGATCTCATTTTGTTCTGTT 1680
consensus_7262#1 ATCAGATTATCTCAGCTGAATTGACGATGAAGGTTCATCTGGATCTCATTTTGTTCTGTT 625
************************************************************
consensus_7262#0 ACTGTCTTTCCATAATGAAGATAACCTTTTGTAATTTTTGGTTTCGACATACCTTTTTTT 1740
consensus_7262#1 ACTGTCTTTCCATAATGAAGATAACCTTTTGTTATTTTTGTTTTCGAAAAAAAAAAA--- 682
******************************** ******* ****** * *
consensus_7262#0 GGGGGTAGAGTTCTTGATCTTGGTCAATTGATTTGTAAGTTGTGCTCTAAATAATGTATA 1800
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 GTGCTTTTACCTCTTTATAATAATGTGAGTTACTTTCTCACTGNCTGGCTGGTACTGCTG 1860
consensus_7262#1 ------------------------------------------------------------
consensus_7262#0 GAATAAGTAATCATTCTATGAGATGCAACCTTT 1893
consensus_7262#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||