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Oryza sativa
cluster # 7263 cluster # 7263       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7263#0 length = 1062 sequences # 4  

consensusID : consensus_7263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1062
fasta sequence
                              [CTTCTCGGGAAGGAGGAGGGAACGGAGATCGGAGGCGGAGGCTCCAAGAAAGCAGCAAGAAAGTGCGAAAATCTGAGGAGGAAGGAGAAGGGAGGTTGAATCGATCGATCGATGGCTCGGCGGCCGGCGCCGTGGGAGCAGGGCGGCGACGAGTACGACTACCTGTTCAAGATCGTGCTGATCGGGGACTCCGGCGTGGGGAAGTCGAACCTCCTCTCCCGCTTCACCCGCAACAGCTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCACCATCCAGGTTGAAGGAAAGATTGTAAAGGCACAGATATGGGACACAGCCGGGCAAGAACGGTACCGGGCCATCACAAGCGCATACTACCGCGGCGCAGTGGGAGCATTGCTAGTCTATGATGTCACAAAGGCCACAACTTTTGAGAATGTGAAGAGGTGGCTCAAGGAGCTCCGTGACCATGCCGACTCCAACATCGTCGTCATGCTCATCGGCAACAAGATCGACCTCAAGCATCTCCGGTCAGTGTCCTTGGAGGACGCAACAAGCTTTGCAGAGAGGGAGGGCCTATCCTTCGTCGAGACCTCGGCGCTCGACGCGACGAATGTGGATAAAGCTTTTCAGACAGTGCTCACTGAGATCTACCGGATCATCAGCAAGAAGGCATTGGCTGCAGATGAGGCTGGAGCTGGTGCTGGTGCTGTCAGAGAGGGCCAATCTATCCAAGTCTCCGCGACAGATTCCAGCAGTTTTACATCAAGATGTTGCTCTTTCTAGTGGCCATCGATATCGTTTCCATTGGATTGCTTGAGGTGATCCTATTTGTAATTGTCAAAATGTGGTGTCATGCAACAAGAATAAAGGATTACATTCAGGAGATGAAGATTTTTCATTCTGTACATAAGAGTAACATAGTACAGCCGCTTCGACAATTTGGATCTGAATATCATAAACTCGTGCTATGCATGGGTGATGCAGTTGCTGTTATACTATTGCCAAAATTGAAATATTTTGTCCTACTACTGTGAAACTGTGGTACAACATAAAGTAAGTCTT]

[+] EMBL AK111499             [CTTCTCGGGAAGGAGGAGGGAACGGAGATCGGAGGCGGAGGCTCCAAGAAAGCAGCAAGAAAGTGCGAAAATCTGAGGAGGAAGGAGAAGGGAGGTTGAATCGATCGATCGATGGCTCGGCGGCCGGCGCCGTGGGAGCAGGGCGGCGACGAGTACGACTACCTGTTCAAGATCGTGCTGATCGGGGACTCCGGCGTGGGGAAGTCGAACCTCCTCTCCCGCTTCACCCGCAACAGCTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCACCATCCAGGTTGAAGGAAAGATTGTAAAGGCACAGATATGGGACACAGCCGGGCAAGAACGGTACCGGGCCATCACAAGCGCATACTACCGCGGCGCAGTGGGAGCATTGCTAGTCTATGATGTCACAAAGGCCACAACTTTTGAGAATGTGAAGAGGTGGCTCAAGGAGCTCCGTGACCATGCCGACTCCAACATCGTCGTCATGCTCATCGGCAACAAGATCGACCTCAAGCATCTCCGGTCAGTGTCCTTGGAGGACGCAACAAGCTTTGCAGAGAGGGAGGGCCTATCCTTCGTCGAGACCTCGGCGCTCGACGCGACGAATGTGGATAAAGCTTTTCAGACAGTGCTCACTGAGATCTACCGGATCATCAGCAAGAAGGCATTGGCTGCAGATGAGGCTGGAGCTGGTGCTGGTGCTGTCAGAGAGGGCCAATCTATCCAAGTCTCCGCGACAGATTCCAGCAGTTTTACATCAAGATGTTGCTCTTTCTAGTGGCCATCGATATCGTTTCAATTGGATTGCTTGAGGTGATCCTATTTGTAATTGTCAAAATGTGGTGTCATGCAACAAGAATAAAGGATTACATTCAGGAGATGAAGATTTTTCATTCTGTACATAAGAGTAACATAGTACAGCCGCTTCGACAATTTGGATCTGAATATCATAAACTCGTGCTATGCATGGGTGATGCAGTTGCTGTTATACTATTGCCAAAATTGAAATATTTTGTCCTACTACTGTGAAACTGTGGTACAACATAAAGTAAGT   ]
[+] EMBL AK104527             [       GGAAGGAGGAGGGAACGGAGATCGGAGGCGGAGGCTCCAAGAAAGCAGCAAGAAAGTGCGAAAATCTGAGGAGGAAGGAGAAGGGAGGTTGAATCGATCGATCGATGGCTCGGCGGCCGGCGCCGTGGGAGCAGGGCGGCGACGAGTACGACTACCTGTTCAAGATCGTGCTGATCGGGGACTCCGGCGTGGGGAAGTCGAACCTCCTCTCCCGCTTCACCCGCAACAGCTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCACCATCCAGGTTGAAGGAAAGATTGTAAAGGCACAGATATGGGACACAGCCGGGCAAGAACGGTACCGGGCCATCACAAGCGCATACTACCGCGGCGCAGTGGGAGCATTGCTAGTCTATGATGTCACAAAGGCCACAACTTTTGAGAATGTGAAGAGGTGGCTCAAGGAGCTCCGTGACCATGCCGACTCCAACATCGTCGTCATGCTCATCGGCAACAAGATCGACCTCAAGCATCTCCGGTCAGTGTCCTTGGAGGACGCAACAAGCTTTGCAGAGAGGGAGGGCCTATCCTTCGTCGAGACCTCGGCGCTCGACGCGACGAATGTGGATAAAGCTTTTCAGACAGTGCTCACTGAGATCTACCGGATCATCAGCAAGAAGGCATTGGCTGCAGATGAGGCTGGAGCTGGTGCTGGTGCTGTCAGAGAGGGCCAATCTATCCAAGTCTCCGCGACAGATTCCAGCAGTTTTACATCAAGATGTTGCTCTTTCTAGTGGCCATCGATATCGTTTCCATTGGATTGCTTGAGGTGATCCTATTTGTAATTGTCAAAATGTGGTGTCATGCAACAAGAATAAAGGATTACATTCAGGAGATGAAGATTTTTCATTCTGTACATAAGAGTAACATAGTACAGCCGCTTCGACAATTTGGATCTGAATATCATAAACTCGTGCTATGCATGGGTGATGCAGTTGCTGTTATACTATTGCCAAAATTGAAATATTTTGTCCTACTACTGTGAAACTGTGGTACAACATAAAGTAAGTCTT]
[+] EMBL AK104362             [       GGAAGGAGGAGGGAACGGAGATCGGAGGCGGAGGCTCCAAGAAAGCAGCAAGAAAGTGCGAAAATCTGAGGAGGAAGGAGAAGGGAGGTTGAATCGATCGATCGATGGCTCGGCGGCCGGCGCCGTGGGAGCAGGGCGGCGACGAGTACGACTACCTGTTCAAGATCGTGCTGATCGGGGACTCCGGCGTGGGGAAGTCGAACCTCCTCTCCCGCTTCACCCGCAACAGCTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCACCATCCAGGTTGAAGGAAAGATTGTAAAGGCACAGATATGGGACACAGCCGGGCAAGAACGGTACCGGGCCATCACAAGCGCATACTACCGCGGCGCAGTGGGAGCATTGCTAGTCTATGATGTCACAAAGGCCACAACTTTTGAGAATGTGAAGAGGTGGCTCAAGGAGCTCCGTGACCATGCCGACTCCAACATCGTCGTCATGCTCATCGGCAACAAGATCGACCTCAAGCATCTCCGGTCAGTGTCCTTGGAGGACGCAACAAGCTTTGCAGAGAGGGAGGGCCTATCCTTCGTCGAGACCTCGGCGCTCGACGCGACGAATGTGGATAAAGCTTTTCAGACAGTGCTCACTGAGATCTACCGGATCATCAGCAAGAAGGCATTGGCTGCAGATGAGGCTGGAGCTGGTGCTGGTGCTGTCAGAGAGGGCCAATCTATCCAAGTCTCCGCGACAGATTCCAGCAGTTTTACATCAAGATGTTGCTCTTTCTAGTGGCCATCGATATCGTTTCCATTGGATTGCTTGAGGTGATCCTATTTGTAATTGTCAAAATGTGGTGTCATGCAACAAGAATAAAGGATTACATTCAGGAGATGAAGATTTTTCATTCTGTACATAAGAGTAACATAGTACAGCCGCTTCGACAATTTGGATCTGAATATCATAAACTCGTGCTATGCATGGGTGATGCAGTTGCTGTTATACTATTGCCAAAATTGAAATATTTTGTCCTACTACTGTGAAACTGTGGTACAACATAAAGTAAGTCTT]
[+] EMBL CB096316             [                                                                                                                                                                                                                                                                                              gagacaAGGGGGAAGGAAAGATTGTAAAGGCACAGATATGGGACACAGCCGGGCAAGAACGGTACCGGGCCATCACAAGCGCATACTACCGCGGCGCAGTGGGAGCATTGCTAGTCTATGATGTCACAAAGGCCACAACTTTTGAGAATGTGAAGAGGTGGCTCAAGGAGCTCCGTGACCATGCCGACTCCAACATCGTCGTCATGCTCATCGGCAACAAGATCGACCTCAAGCATCTCCGGTCAGTGTCCTTGGAGGACGCAACAAGCTTTGCAGAGAGGGAGGGCCTATCCTTCGTCGAGACCTCGGCGCTCGACGCGACGAATGTGGATAAAGCTTTTCAGACAGTGCTCACTGAGATCTACCGGATCATCAGCAAGAAGGCATTGGCTGCAGATGAGGCTGGAGCTGGTGCTGGTGCTGTCAGAGAGGGCCAATCTATCCAAGTCTCCGCGACAGATTCCAGCA                                                                                                                                                                                                                                                                                                                    ]


>consensus_7263#0 CTTCTCGGGAAGGAGGAGGGAACGGAGATCGGAGGCGGAGGCTCCAAGAAAGCAGCAAGA AAGTGCGAAAATCTGAGGAGGAAGGAGAAGGGAGGTTGAATCGATCGATCGATGGCTCGG CGGCCGGCGCCGTGGGAGCAGGGCGGCGACGAGTACGACTACCTGTTCAAGATCGTGCTG ATCGGGGACTCCGGCGTGGGGAAGTCGAACCTCCTCTCCCGCTTCACCCGCAACAGCTTC TCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCACCATCCAGGTTGAA GGAAAGATTGTAAAGGCACAGATATGGGACACAGCCGGGCAAGAACGGTACCGGGCCATC ACAAGCGCATACTACCGCGGCGCAGTGGGAGCATTGCTAGTCTATGATGTCACAAAGGCC ACAACTTTTGAGAATGTGAAGAGGTGGCTCAAGGAGCTCCGTGACCATGCCGACTCCAAC ATCGTCGTCATGCTCATCGGCAACAAGATCGACCTCAAGCATCTCCGGTCAGTGTCCTTG GAGGACGCAACAAGCTTTGCAGAGAGGGAGGGCCTATCCTTCGTCGAGACCTCGGCGCTC GACGCGACGAATGTGGATAAAGCTTTTCAGACAGTGCTCACTGAGATCTACCGGATCATC AGCAAGAAGGCATTGGCTGCAGATGAGGCTGGAGCTGGTGCTGGTGCTGTCAGAGAGGGC CAATCTATCCAAGTCTCCGCGACAGATTCCAGCAGTTTTACATCAAGATGTTGCTCTTTC TAGTGGCCATCGATATCGTTTCCATTGGATTGCTTGAGGTGATCCTATTTGTAATTGTCA AAATGTGGTGTCATGCAACAAGAATAAAGGATTACATTCAGGAGATGAAGATTTTTCATT CTGTACATAAGAGTAACATAGTACAGCCGCTTCGACAATTTGGATCTGAATATCATAAAC TCGTGCTATGCATGGGTGATGCAGTTGCTGTTATACTATTGCCAAAATTGAAATATTTTG TCCTACTACTGTGAAACTGTGGTACAACATAAAGTAAGTCTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)