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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 846 fasta sequence
[TCGTTCAAGCACATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATTTTATGTGCTTTACCCTGAT-ATAATTTAAGAAGTCGGGCAATGACAACAACACGCATGCAGGATATTGCCAT]
[+] EMBL CB630689 [TCGTTCAAGCACATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATTTTATGTGCTTTACCCTGAT ATAATTTAAGAAGTCGGGCAATGACAACAACACGCATGCAGGATATTGCCAT]
[+] EMBL CB633651 [ tcAGCTTATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGANACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATTTTATGTGCTTTA CCTGATAATAATTTAAGAAGTCGGGCAAT ]
consensusID : consensus_7264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 824 fasta sequence
[TCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCCTTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCTATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATT]
[+] EMBL CB634357 [TCTGTGTGGGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCCTTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCTATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCACGCTATT]
[+] EMBL CB634208 [ CTGTGTGCGAGAGATAATGGAGAATCCACCTATGATGTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAACCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAATAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGAGATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAGCAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCGCTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCCTTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGACGGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCAGGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGCCATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTATCGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTCGGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATTCTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7264#0 TCGTTCAAGCACATCGTTTATTCTCTGTGTGGGAGAGATAATGGAGAATCCACCTATGAT 60
consensus_7264#1 -----------------------TCTGTGTGGGAGAGATAATGGAGAATCCACCTATGAT 37
*************************************
consensus_7264#0 GTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAA 120
consensus_7264#1 GTGCTTTTCGATGGGGGCAATCAACTCTCTTGTGGAGAAGATTACCCCACTAACGAAGAA 97
************************************************************
consensus_7264#0 CCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAA 180
consensus_7264#1 CCATCCCAAGATCAAGTACTTGGTGGAAGATATCAAGAGCCTTAGAGATGATGTCCTGAA 157
************************************************************
consensus_7264#0 TAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGA 240
consensus_7264#1 TAAATTTGCTGGAGGAGGGACGGGTGAGCAAGTCAATGTGTGGATGAAGCAGGCCCGGGA 217
************************************************************
consensus_7264#0 GATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAG 300
consensus_7264#1 GATGATCTACGACATAGAAGACTGGATTGATCTGAAGAAGCAGGAGGTAGCCAGTTTAAG 277
************************************************************
consensus_7264#0 CAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCG 360
consensus_7264#1 CAAATCGGACGAGATGCAAATCGACGAATTCAAGGACCAGATCAACGAAGCTCGAGAGCG 337
************************************************************
consensus_7264#0 CTGCGAAAG--------------------------------------------------- 369
consensus_7264#1 CTGCGAAAGGTATGAGCTTCTCAAGCAAGCCCCTACTGCTACTTCTGATGCGCAAATTCC 397
*********
consensus_7264#0 ---------------------CAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGAC 408
consensus_7264#1 TTATGATGGAGCTGGACCCAGCAAAGTCGCCGGTCGTAGGTTGCTATTGGAAGAGAAGAC 457
***************************************
consensus_7264#0 GGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCA 468
consensus_7264#1 GGTCCTCGTTGGTATGGATGGTCCAAAATCAGAGCTTCTAGAGCATCTGAAGAGCGAGCA 517
************************************************************
consensus_7264#0 GGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGC 528
consensus_7264#1 GGAGGAGTTGAAGGTGGTTTCCGTACACGGAACGGGAGGCCATGGCAAGACTGCTCTTGC 577
************************************************************
consensus_7264#0 CATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTAT 588
consensus_7264#1 CATGCTGATATATCGAGACATGTTTATTGAAGGGTTTGAATGCCAAGCTTTTGTCTCTAT 637
************************************************************
consensus_7264#0 CGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTC 648
consensus_7264#1 CGGCCGGACCACATCAGCGAGAACCGCACTAATCCGAATACTCTGCCAAGTGATGAAGTC 697
************************************************************
consensus_7264#0 GGAGGCGGATGCTTGGCAATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATT 708
consensus_7264#1 GGAGGCGGATGCTTGGCTATACAGGAGCTACAATCAAATCATCACTGAACTTTGGGGATT 757
***************** ******************************************
consensus_7264#0 CTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCA 768
consensus_7264#1 CTTACGAAACAAGAGGTATTTCATCTGCATTGATGACATACGGAATGCAGAGGATGTGCA 817
************************************************************
consensus_7264#0 CGCTATTTTATGTGCTTTACCCTGATATAATTTAAGAAGTCGGGCAATGACAACAACACG 828
consensus_7264#1 CGCTATT----------------------------------------------------- 824
*******
consensus_7264#0 CATGCAGGATATTGCCAT 846
consensus_7264#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||