cluster # 7266

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Oryza sativa
cluster # 7266 cluster # 7266 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7266#0 length = 1146 sequences # 3

consensus_7266#1 length = 731 sequences # 1

consensusID : consensus_7266#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1146
fasta sequence

                              [TCCCTCCCCAGCAGTGCAGCAGTACCACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCTCGCTGGCGATGACGCCGACGACTACTACTACGCCTACGACTCCAGATTCCGCCGAGGCAGCGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTCCTTCCTCCCCTGCTTCCTCCCCTGCTCGCCCGGATCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAACATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTCGCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGACCCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATCCTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGATGTGCAAGATGGCGCGCGCGGCGCGGCGGGCCGACAAGCTGCGGTGGCGCGCCGTGGAGGCCGCGGTGAAGGAGGTGCTGACGCCGGCGCAGGCCAAGGAGTTCCTCAAGGCCGTCGAGGACGTGGCGGCCAGGGCGGCGCGCCACGGCGCGAGGTGGCACGCGCGCACCGGCGCCGTCTCCGTCCCCGTCGAGGTGTTCGACCGCATGCGCGCCAACGCCAGAGCAGCCACGGATGATGCTTGGTGATCATCAACGGTTTTCATTCGATTCTCCACTAGTTTTGTTTTGTTTGGACAAGAGATTCATCGCTAGTTTTACTTCAGTTCGAATCCTTCTGAAAGCTTGGGCTGAAATCGGCCAAAATTGTTCATGTTTTTACTTCACTTCTTTGCACCTATATACTGTATTCCTGTCTCTACTTACAGAGAGGGAACTATACCTGAACCATTGTTTTCGAATGAAGTTTGGATGGATTACACCTTTAAAAAAAGGGA]

[+] EMBL AK068597             [TCCCTCCCCAGCAGTGCAGCAGTACCACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCTCGCTGGCGATGACGCCGACGACTACTACTACGCCTACGACTCCAGATTCCGCCGAGGCAGCGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTCCTTCCTCCCCTGCTTCCTCCCCTGCTCGCCCGGATCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAACATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTCGCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGACCCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATCCTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGATGTGCAAGATGGCGCGCGCGGCGCGGCGGGCCGACAAGCTGCGGTGGCGCGCCGTGGAGGCCGCGGTGAAGGAGGTGCTGACGCCGGCGCAGGCCAAGGAGTTCCTCAAGGCCGTCGAGGACGTGGCGGCCAGGGCGGCGCGCCACGGCGCGAGGTGGCACGCGCGCACCGGCGCCGTCTCCGTCCCCGTCGAGGTGTTCGACCGCATGCGCGCCAACGCCAGAGCAGCCACGGATGATGCTTGGTGATCATCAACGGTTTTCATTCGATTCTCCACTAGTTTTGTTTTGTTTGGACAAGAGATTCATCGCTAGTTTTACTTCAGTTCGAATCCTTCTGAAAGCTTGGGCTGAAATCGGCCAAAATTGTTCATGTTTTTACTTCACTTCTTTGCACCTATATACTGTATTCCTGTCTCTACTTACAGAGAGGGAACTATACCTGAACCATTGTTTTCGAATGAAGTTTGGATGGATTACACC              ]
[-] EMBL CB654507             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCGCCTCCACGCCCGTGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGATGTGCAAGATGGCGCGCGCGGCGCGGCGGGCCGACAAGCTGCGGTGGCGCCCCGTGGAGGCCGCGGTGAAGGAGGTGCTGACGCCGGCGCAGGCCAAGGAGTTCCTCAAGGCCGTCGAGGACGTGGCGGCCAGGGCGGCGCGCCACGGCGCGAGGTGGCACGCGCGCACCGGCGCCGTCTCCGTCCCCGTCGAGGTGTTCGACCGCATGCGCGCCAACGCCAGAGCAGCCACGGATGATGCTTGGTGATCATCAACGGTTTTCATTCGATTCTCCACTAGTTTTGTTTTGTTTGGACAAGAGATTCATCGCTAGTTTTACTTCAGTTCGAATCCTTCTGAAAGCTTGGGCTGAAATCGGCCAAAATTGTTCATGTTTTTACTTCACTTCTTTGCACCTATATACTGTATTCCTGTCTCTACTTACAGAGAGGGAACTATACCTGAACCATTGTTTTCGAATGAAGTTTGGATGGATTACACCTTTAAAAAAAGGGA]
[+] EMBL AK060240             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCTAGTTTTACTTCAGTTCGAATCCTTCTGAAAGCTTGGGCTGAAATCGGCCAAAATTGTTCATGTTTTTACTTCACTTCTTTGCACCTATATACTGTATTCCTGTCTCTACTTACAGAGAGGGA                                                              ]




>consensus_7266#0
TCCCTCCCCAGCAGTGCAGCAGTACCACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCT
CGCTGGCGATGACGCCGACGACTACTACTACGCCTACGACTCCAGATTCCGCCGAGGCAG
CGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTC
CTTCCTCCCCTGCTTCCTCCCCTGCTCGCCCGGATCGGTGGAACCGACGGTGCACCGCCG
CCTCCTCTCCTCCGACTCCAGCGACAGCGACAACATCGCCACCGCGGACATCACCGCCGA
CCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTCGCCACCGGCCCGCCCGTCCGCCCCCG
CGACGTCCCCTGCCTCCTCGCGCGCACCGACGACCCGCCGCTCGCCGTGGCCGCGCTCTC
CTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATCCTCCTCACCCTCCTACCGGCGCTCTT
CCCCACCCTCCCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCGCCTCCACGC
CCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGCGATGAAGCT
GGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGATGTGCAAGAT
GGCGCGCGCGGCGCGGCGGGCCGACAAGCTGCGGTGGCGCGCCGTGGAGGCCGCGGTGAA
GGAGGTGCTGACGCCGGCGCAGGCCAAGGAGTTCCTCAAGGCCGTCGAGGACGTGGCGGC
CAGGGCGGCGCGCCACGGCGCGAGGTGGCACGCGCGCACCGGCGCCGTCTCCGTCCCCGT
CGAGGTGTTCGACCGCATGCGCGCCAACGCCAGAGCAGCCACGGATGATGCTTGGTGATC
ATCAACGGTTTTCATTCGATTCTCCACTAGTTTTGTTTTGTTTGGACAAGAGATTCATCG
CTAGTTTTACTTCAGTTCGAATCCTTCTGAAAGCTTGGGCTGAAATCGGCCAAAATTGTT
CATGTTTTTACTTCACTTCTTTGCACCTATATACTGTATTCCTGTCTCTACTTACAGAGA
GGGAACTATACCTGAACCATTGTTTTCGAATGAAGTTTGGATGGATTACACCTTTAAAAA
AAGGGA

consensusID : consensus_7266#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 731
fasta sequence

                              [AGCAGTCCTACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCTCGCTGGCGATGACGCCGACGACTACTACTACGCCTACCACTCCAGATTCCGCCGAGGCAGCGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTCCTTCCTCCCCTGCTTCCTCCCCTGCTGTAATCGCTCCTTCCCGATTCTTGATTTGCGGATTCTTGATTCCGGTGGATTCTTGGCTCATCGCTGCTTGGTTCTTGGCAATCAGCGCCCGGATCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAACATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTCGCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGACCCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATCCTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGATGTGCAAGATGG]

[+] EMBL CB654506             [AGCAGTCCTACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCTCGCTGGCGATGACGCCGACGACTACTACTACGCCTACCACTCCAGATTCCGCCGAGGCAGCGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTCCTTCCTCCCCTGCTTCCTCCCCTGCTGTAATCGCTCCTTCCCGATTCTTGATTTGCGGATTCTTGATTCCGGTGGATTCTTGGCTCATCGCTGCTTGGTTCTTGGCAATCAGCGCCCGGATCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAACATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTCGCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGACCCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATCCTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGATGTGCAAGATGG]




>consensus_7266#1
AGCAGTCCTACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCTCGCTGGCGATGACGCCG
ACGACTACTACTACGCCTACCACTCCAGATTCCGCCGAGGCAGCGGCGGCGGGAAGATCG
CCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTCCTTCCTCCCCTGCTTCC
TCCCCTGCTGTAATCGCTCCTTCCCGATTCTTGATTTGCGGATTCTTGATTCCGGTGGAT
TCTTGGCTCATCGCTGCTTGGTTCTTGGCAATCAGCGCCCGGATCGGTGGAACCGACGGT
GCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAACATCGCCACCGCGGACAT
CACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTCGCCACCGGCCCGCCCGT
CCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGACCCGCCGCTCGCCGTGGC
CGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATCCTCCTCACCCTCCTACC
GGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTCTCCGCCGCCGCGCGCCG
CCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAGTACCAGTCCACCTACGC
GATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAGACGGCGGGGGAGGAGAT
GTGCAAGATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7266#0      TCCCTCCCCAGCAGTGCAGCAGTACCACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCT 60
consensus_7266#1      -----------------AGCAGTCCTACGCGCGGCGCGCAATGCCGTTCCTTAGCCCTCT 43
                                       ****** * **********************************

consensus_7266#0      CGCTGGCGATGACGCCGACGACTACTACTACGCCTACGACTCCAGATTCCGCCGAGGCAG 120
consensus_7266#1      CGCTGGCGATGACGCCGACGACTACTACTACGCCTACCACTCCAGATTCCGCCGAGGCAG 103
                      ************************************* **********************

consensus_7266#0      CGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTC 180
consensus_7266#1      CGGCGGCGGGAAGATCGCCAAGAAGGAAAAGGACAAGGACAAGGACAAGGGCTTCCTCTC 163
                      ************************************************************

consensus_7266#0      CTTCCTCCCCTGCTTCCTCCCCTGCT---------------------------------- 206
consensus_7266#1      CTTCCTCCCCTGCTTCCTCCCCTGCTGTAATCGCTCCTTCCCGATTCTTGATTTGCGGAT 223
                      **************************                                  

consensus_7266#0      ----------------------------------------------------CGCCCGGA 214
consensus_7266#1      TCTTGATTCCGGTGGATTCTTGGCTCATCGCTGCTTGGTTCTTGGCAATCAGCGCCCGGA 283
                                                                          ********

consensus_7266#0      TCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAAC 274
consensus_7266#1      TCGGTGGAACCGACGGTGCACCGCCGCCTCCTCTCCTCCGACTCCAGCGACAGCGACAAC 343
                      ************************************************************

consensus_7266#0      ATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTC 334
consensus_7266#1      ATCGCCACCGCGGACATCACCGCCGACCTCGCCCGCCTCCGCGCCCGCTACTCCCGCCTC 403
                      ************************************************************

consensus_7266#0      GCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGAC 394
consensus_7266#1      GCCACCGGCCCGCCCGTCCGCCCCCGCGACGTCCCCTGCCTCCTCGCGCGCACCGACGAC 463
                      ************************************************************

consensus_7266#0      CCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATC 454
consensus_7266#1      CCGCCGCTCGCCGTGGCCGCGCTCTCCTGGCTCGGCGGCGACCTCCGCCCCTCCTGCATC 523
                      ************************************************************

consensus_7266#0      CTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTC 514
consensus_7266#1      CTCCTCACCCTCCTACCGGCGCTCTTCCCCACCCTCCCCGCGCACGCCCGCCACGCGCTC 583
                      ************************************************************

consensus_7266#0      TCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAG 574
consensus_7266#1      TCCGCCGCCGCGCGCCGCCTCCACGCCCGCGAGGCCGCGCTGGACGGCGAGGTCGCCGAG 643
                      ************************************************************

consensus_7266#0      TACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAG 634
consensus_7266#1      TACCAGTCCACCTACGCGATGAAGCTGGCGTGCGAGAAGACCAAGGACGGGGTGGCGGAG 703
                      ************************************************************

consensus_7266#0      ACGGCGGGGGAGGAGATGTGCAAGATGGCGCGCGCGGCGCGGCGGGCCGACAAGCTGCGG 694
consensus_7266#1      ACGGCGGGGGAGGAGATGTGCAAGATGG-------------------------------- 731
                      ****************************                                

consensus_7266#0      TGGCGCGCCGTGGAGGCCGCGGTGAAGGAGGTGCTGACGCCGGCGCAGGCCAAGGAGTTC 754
consensus_7266#1      ------------------------------------------------------------
                                                                                  

consensus_7266#0      CTCAAGGCCGTCGAGGACGTGGCGGCCAGGGCGGCGCGCCACGGCGCGAGGTGGCACGCG 814
consensus_7266#1      ------------------------------------------------------------
                                                                                  

consensus_7266#0      CGCACCGGCGCCGTCTCCGTCCCCGTCGAGGTGTTCGACCGCATGCGCGCCAACGCCAGA 874
consensus_7266#1      ------------------------------------------------------------
                                                                                  

consensus_7266#0      GCAGCCACGGATGATGCTTGGTGATCATCAACGGTTTTCATTCGATTCTCCACTAGTTTT 934
consensus_7266#1      ------------------------------------------------------------
                                                                                  

consensus_7266#0      GTTTTGTTTGGACAAGAGATTCATCGCTAGTTTTACTTCAGTTCGAATCCTTCTGAAAGC 994
consensus_7266#1      ------------------------------------------------------------
                                                                                  

consensus_7266#0      TTGGGCTGAAATCGGCCAAAATTGTTCATGTTTTTACTTCACTTCTTTGCACCTATATAC 1054
consensus_7266#1      ------------------------------------------------------------
                                                                                  

consensus_7266#0      TGTATTCCTGTCTCTACTTACAGAGAGGGAACTATACCTGAACCATTGTTTTCGAATGAA 1114
consensus_7266#1      ------------------------------------------------------------
                                                                                  

consensus_7266#0      GTTTGGATGGATTACACCTTTAAAAAAAGGGA 1146
consensus_7266#1      --------------------------------