cluster # 7267

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Oryza sativa
cluster # 7267 cluster # 7267 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7267#0 length = 1029 sequences # 2

consensus_7267#1 length = 777 sequences # 1
consensus_7267#2 length = 255 sequences # 1

consensusID : consensus_7267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1029
fasta sequence

                              [ACAGTCCAGGACTGGAGCTGTGGTCCGGTGGAGGTTATAGAGAAGAAGCAGAGAGCAAGAATGGCTGGGCTGTATGAGAGACCGTCGGAGACGTACACCAAGAAGCGGCCTCGGTACCCTGACGCTTGGTTCTCCAAGCTCGCCGCCCTCACAGCCGGCCACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAGATCCGCCACGCCGTCGCGCACCCCAAGGTGCGGTACCTGCACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCGAGGGCTCGCTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTCTACGCCGTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTACGAGATCCACCCGTTCGAGGACAAGCTGCACGGCCAGCTGTACCCGGCCATGCGCCCGTATATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAGCCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACGCTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAGGGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCCTGTTTAGATGAAACTATTTTTAAGTCCCTATCATATCGGATGTTTGAAAATTAATTATAAATATTAAAC]

[+] EMBL AK101454             [ACAGTCCAGGACTGGAGCTGTGGTCCGGTGGAGGTTATAGAGAAGAAGCAGAGAGCAAGAATGGCTGGGCTGTATGAGAGACCGTCGGAGACGTACACCAAGAAGCGGCCTCGGTACCCTGACGCTTGGTTCTCCAAGCTCGCCGCCCTCACAGCCGGCCACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAGATCCGCCACGCCGTCGCGCACCCCAAGGTGCGGTACCTGCACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCGAGGGCTCGCTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTCTACGCCGTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTACGAGATCCACCCGTTCGAGGACAAGCTGCACGGCCAGCTGTACCCGGCCATGCGCCCGTATATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAGCCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACGCTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAGGGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCCTGTTTAGATGAAACTATTTTTAAGTCCCTATCATATCGGATGTTTGAAAATTAATTATAAATATTAAAC]
[+] EMBL CB620412             [                               acgcTATAGAGAAGAAGCAGAGAGCAAGAATGGCTGGGCTGTATGAGAGACCGTCGGAGACGTACACCAAGAAGCGGCCTCGGTACCCTGACGCTTGGTTCTCCAAGCTCGCCGCCCTCACCGCCGGCCACCACCGCGCCTGGGACGCCGGCTGCGGCACCGGCCAGGCCTCCATCAGCATCGCGGAGCACTACGACAGCGTGGTCGCGACGGACGCGAGCGAGGGGCAGATCCGCCACGCCGTCGCGCACCCCAAGGTGCGGTACCTGCACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCAAGGGCTCGCTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTCTACGCCGTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTACGAGATCCACCCGTTCGAGGACAAGCTGCACGGGCAGCTGTACCCGGCCATGCGCCCGTATATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAGCCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACGCTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAGGGAGTAGACCTG                                                                                                                                                                                                                                                                                                         ]




>consensus_7267#0
ACAGTCCAGGACTGGAGCTGTGGTCCGGTGGAGGTTATAGAGAAGAAGCAGAGAGCAAGA
ATGGCTGGGCTGTATGAGAGACCGTCGGAGACGTACACCAAGAAGCGGCCTCGGTACCCT
GACGCTTGGTTCTCCAAGCTCGCCGCCCTCACAGCCGGCCACCACCGCGCCTGGGACGCC
GGCTGCGGCACCGGCCAGGCCTCCATCAGCATCGCGGAGCACTACGACAGCGTGGTCGCG
ACGGACGCGAGCGAGGGGCAGATCCGCCACGCCGTCGCGCACCCCAAGGTGCGGTACCTG
CACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCGAGGGCTCG
CTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTCTACGCC
GTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTAC
GAGATCCACCCGTTCGAGGACAAGCTGCACGGCCAGCTGTACCCGGCCATGCGCCCGTAT
ATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAG
CCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACG
CTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAG
GGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGA
GACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAA
GTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTG
TTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCC
TGTTTAGATGAAACTATTTTTAAGTCCCTATCATATCGGATGTTTGAAAATTAATTATAA
ATATTAAAC

consensusID : consensus_7267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 777
fasta sequence

                              [CACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCAAGGGCTCGCTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTTTACGCCGTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTACGAGATCCACCCGTTCGAGGACAAGCTGCACGGGCAGCTGTACCCGGCCATGCGCCCGTATATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAGCCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACGCTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAGGGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCCCCAGAATAAATTCCGGAGAGACGACTGACTGCTTCGGGGTTGTGCACGGTTGTGATGTTGCTTTATGTTTGCCGAATAAGTTCGAGCTGGTATTGGATACTATACTGCGCGGTATCTGCAATTCTGCATTTTATATGCCTAAAAAAAAGA]

[-] EMBL CB620413             [CACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCAAGGGCTCGCTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTTTACGCCGTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTACGAGATCCACCCGTTCGAGGACAAGCTGCACGGGCAGCTGTACCCGGCCATGCGCCCGTATATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAGCCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACGCTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAGGGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCCCCAGAATAAATTCCGGAGAGACGACTGACTGCTTCGGGGTTGTGCACGGTTGTGATGTTGCTTTATGTTTGCCGAATAAGTTCGAGCTGGTATTGGATACTATACTGCGCGGTATCTGCAATTCTGCATTTTATATGCCTAAAAAAAAGA]




>consensus_7267#1
CACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCAAGGGCTCG
CTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTTTACGCC
GTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTAC
GAGATCCACCCGTTCGAGGACAAGCTGCACGGGCAGCTGTACCCGGCCATGCGCCCGTAT
ATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAG
CCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACG
CTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAG
GGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGA
GACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAA
GTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTG
TTTCGTTGCGATAGATTGGTGACTTCCCCAGAATAAATTCCGGAGAGACGACTGACTGCT
TCGGGGTTGTGCACGGTTGTGATGTTGCTTTATGTTTGCCGAATAAGTTCGAGCTGGTAT
TGGATACTATACTGCGCGGTATCTGCAATTCTGCATTTTATATGCCTAAAAAAAAGA

consensusID : consensus_7267#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [GGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCCTGTTTAGATGAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF314512             [GGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCCTGTTTAGATGAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7267#2
GGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGAGACCCGGCGGTGGCGAG
GAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAAGTGCTGAACTGAAACGT
ACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTGTTTCGTTGCGATAGATT
GGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCCTGTTTAGATGAAAAAAA
AAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7267#0      ACAGTCCAGGACTGGAGCTGTGGTCCGGTGGAGGTTATAGAGAAGAAGCAGAGAGCAAGA 60
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      ------------------------------------------------------------
                                                                                  

consensus_7267#0      ATGGCTGGGCTGTATGAGAGACCGTCGGAGACGTACACCAAGAAGCGGCCTCGGTACCCT 120
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      ------------------------------------------------------------
                                                                                  

consensus_7267#0      GACGCTTGGTTCTCCAAGCTCGCCGCCCTCACAGCCGGCCACCACCGCGCCTGGGACGCC 180
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      ------------------------------------------------------------
                                                                                  

consensus_7267#0      GGCTGCGGCACCGGCCAGGCCTCCATCAGCATCGCGGAGCACTACGACAGCGTGGTCGCG 240
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      ------------------------------------------------------------
                                                                                  

consensus_7267#0      ACGGACGCGAGCGAGGGGCAGATCCGCCACGCCGTCGCGCACCCCAAGGTGCGGTACCTG 300
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      ------------------------------------------------------------
                                                                                  

consensus_7267#0      CACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCGAGGGCTCG 360
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      CACACCCCGGTGGACCTCTCCGAGGACGACCTCGTCGCCATGGTCGGCGGCAAGGGCTCG 60
                                                                                  

consensus_7267#0      CTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTCTACGCC 420
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      CTGGACCTCGTCGTGGTGGCGACCTCCATCCACTGGTTCGACATCCCGCTCTTTTACGCC 120
                                                                                  

consensus_7267#0      GTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTAC 480
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      GTGGCCAACCGCGTCCTCAAGAGGCCCGGCGGCGTCCTCGCGGTGTGGGGCTACAACTAC 180
                                                                                  

consensus_7267#0      GAGATCCACCCGTTCGAGGACAAGCTGCACGGCCAGCTGTACCCGGCCATGCGCCCGTAT 540
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      GAGATCCACCCGTTCGAGGACAAGCTGCACGGGCAGCTGTACCCGGCCATGCGCCCGTAT 240
                                                                                  

consensus_7267#0      ATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAG 600
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      ATGGACCCGAGGACGAGGCTGGCCATGGACAGGTACCGCGACCTGCCGTTCCCGTTCGAG 300
                                                                                  

consensus_7267#0      CCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACG 660
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      CCCGTCGGCGTGGGCCGCGAGGGCGAGCCGGCCGACGTCGACATAGAGGTGGACATGACG 360
                                                                                  

consensus_7267#0      CTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAG 720
consensus_7267#2      ------------------------------------------------------------
consensus_7267#1      CTGGACGACCTCGTCGGGTTCCTGAAGACCGGCTCCGTCGTGACGACGGCGAGGGAGAAG 420
                                                                                  

consensus_7267#0      GGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGA 780
consensus_7267#2      -----------------GGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGA 43
consensus_7267#1      GGAGTAGACCTGGAGGCGGTGACCAAGGACGTGATGAAGGGGGTGGAGGCGGAGTGGGGA 480
                                       *******************************************

consensus_7267#0      GACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAA 840
consensus_7267#2      GACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAA 103
consensus_7267#1      GACCCGGCGGTGGCGAGGAAGCTCGTGTTCAAGGCCTTCATGCTCGCCGGGAAGCCCAAA 540
                      ************************************************************

consensus_7267#0      GTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTG 900
consensus_7267#2      GTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTG 163
consensus_7267#1      GTGCTGAACTGAAACGTACGCTGAACCGCTGATTGCTGATCATTGGTCAACCGCGTCTTG 600
                      ************************************************************

consensus_7267#0      TTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCC 960
consensus_7267#2      TTTCGTTGCGATAGATTGGTGACTTCACCAGAATAAATTCCGGAGAGACGACTGAGGCCC 223
consensus_7267#1      TTTCGTTGCGATAGATTGGTGACTTCCCCAGAATAAATTCCGGAGAGACGACTGACTGCT 660
                      ************************** ****************************   * 

consensus_7267#0      T---GTTTAGATGAAACTATTTTTAAGTCCCTATCATATCGGATGTTTGAAAATTAATTA 1017
consensus_7267#2      T---GTTTAGATGAAAAAAAAAAAAAAAAAAAAAA------------------------- 255
consensus_7267#1      TCGGGGTTGTGCACGGTTGTGATGTTGCTTTATGTTTGCCGAATAAGTTCGAGCTGGTAT 720
                      *   * **                                                    

consensus_7267#0      TAAATATTAAAC--------------------------------------------- 1029
consensus_7267#2      ---------------------------------------------------------
consensus_7267#1      TGGATACTATACTGCGCGGTATCTGCAATTCTGCATTTTATATGCCTAAAAAAAAGA 777